RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 EXOC5O00471 708 aa11.08□□□□□ -0.64
SF3A1-208ENST00000485618 PPP2R1AP30153 589 aa11.08□□□□□ -0.64
SF3A1-208ENST00000485618 SPON1Q9HCB6 807 aa11.08□□□□□ -0.64
SF3A1-208ENST00000485618 LTN1O94822 1766 aa11.08□□□□□ -0.64
SF3A1-208ENST00000485618 IL2RBP14784 551 aa11.07□□□□□ -0.64
SF3A1-208ENST00000485618 DDB1Q16531 1140 aa11.07□□□□□ -0.64
SF3A1-208ENST00000485618 PNNQ9H307 717 aaKnown RBP11.07□□□□□ -0.64
SF3A1-208ENST00000485618 MYBBP1AQ9BQG0 1328 aaKnown RBP11.07□□□□□ -0.64
SF3A1-208ENST00000485618 KCNQ2O43526 872 aa11.06□□□□□ -0.64
SF3A1-208ENST00000485618 NEFMP07197 916 aa11.06□□□□□ -0.64
SF3A1-208ENST00000485618 TATP17735 454 aaPredicted RBP11.06□□□□□ -0.64
SF3A1-208ENST00000485618 EIF4A2Q14240 407 aaKnown RBP11.06□□□□□ -0.64
SF3A1-208ENST00000485618 COL18A1P39060 1754 aa11.05□□□□□ -0.64
SF3A1-208ENST00000485618 SBF2Q86WG5 1849 aa11.05□□□□□ -0.64
SF3A1-208ENST00000485618 NBPF6Q5VWK0 638 aa11.05□□□□□ -0.64
SF3A1-208ENST00000485618 NBPF4Q96M43 638 aa11.05□□□□□ -0.64
SF3A1-208ENST00000485618 PRKRIP1Q9H875 184 aaPredicted RBP11.05□□□□□ -0.64
SF3A1-208ENST00000485618 ANO8Q9HCE9 1232 aaPredicted RBP11.05□□□□□ -0.64
SF3A1-208ENST00000485618 CASZ1Q86V15 1759 aa11.04□□□□□ -0.64
SF3A1-208ENST00000485618 DCAF8L1A6NGE4 600 aa11.04□□□□□ -0.64
SF3A1-208ENST00000485618 EYA1Q99502 592 aa11.04□□□□□ -0.64
SF3A1-208ENST00000485618 SPG7Q9UQ90 795 aa11.04□□□□□ -0.64
SF3A1-208ENST00000485618 FAM208AQ9UK61 1670 aaKnown RBP11.04□□□□□ -0.64
SF3A1-208ENST00000485618 U2SURPO15042 1029 aaKnown RBP11.03□□□□□ -0.64
SF3A1-208ENST00000485618 IL13P35225 146 aa11.03□□□□□ -0.64
SF3A1-208ENST00000485618 AMOTQ4VCS5 1084 aa11.03□□□□□ -0.64
SF3A1-208ENST00000485618 BCL11BQ9C0K0 894 aaPredicted RBP11.03□□□□□ -0.64
SF3A1-208ENST00000485618 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.03□□□□□ -0.64
SF3A1-208ENST00000485618 PLEKHG2Q9H7P9 1386 aa11.03□□□□□ -0.64
SF3A1-208ENST00000485618 PLSCR1O15162 318 aa11.02□□□□□ -0.65
SF3A1-208ENST00000485618 U2AF1L5P0DN76 240 aaPredicted RBP11.02□□□□□ -0.65
SF3A1-208ENST00000485618 U2AF1Q01081 240 aaKnown RBP eCLIP11.02□□□□□ -0.65
SF3A1-208ENST00000485618 PLEKHO1Q53GL0 409 aaPredicted RBP11.02□□□□□ -0.65
SF3A1-208ENST00000485618 SULT6B1Q6IMI4 303 aa11.02□□□□□ -0.65
SF3A1-208ENST00000485618 PTF1AQ7RTS3 328 aa11.02□□□□□ -0.65
SF3A1-208ENST00000485618 ZCRB1Q8TBF4 217 aaKnown RBP11.02□□□□□ -0.65
SF3A1-208ENST00000485618 BCL9O00512 1426 aa11.01□□□□□ -0.65
SF3A1-208ENST00000485618 TNS2Q63HR2 1409 aa11.01□□□□□ -0.65
SF3A1-208ENST00000485618 RGPD5Q99666 1765 aa11.01□□□□□ -0.65
SF3A1-208ENST00000485618 SENP3-EIF4A1A0A087X0R7 540 aa11.01□□□□□ -0.65
SF3A1-208ENST00000485618 WDR43Q15061 677 aaKnown RBP eCLIP11.01□□□□□ -0.65
SF3A1-208ENST00000485618 MARCH10Q8NA82 808 aaPredicted RBP11.01□□□□□ -0.65
SF3A1-208ENST00000485618 IGSF1Q8N6C5 1336 aa11.01□□□□□ -0.65
SF3A1-208ENST00000485618 FCHSD2O94868 740 aa11□□□□□ -0.65
SF3A1-208ENST00000485618 HSP90AB1P08238 724 aaKnown RBP11□□□□□ -0.65
SF3A1-208ENST00000485618 USHBP1Q8N6Y0 703 aa11□□□□□ -0.65
SF3A1-208ENST00000485618 DDX54Q8TDD1 881 aaKnown RBP11□□□□□ -0.65
SF3A1-208ENST00000485618 NHSQ6T4R5 1651 aa10.99□□□□□ -0.65
SF3A1-208ENST00000485618 ZBTB7AO95365 584 aa10.99□□□□□ -0.65
SF3A1-208ENST00000485618 PCDH11XQ9BZA7 1347 aa10.99□□□□□ -0.65
SF3A1-208ENST00000485618 PCDH11YQ9BZA8 1340 aa10.99□□□□□ -0.65
SF3A1-208ENST00000485618 HMGB2P26583 209 aaKnown RBP10.98□□□□□ -0.65
SF3A1-208ENST00000485618 C1orf141Q5JVX7 400 aa10.98□□□□□ -0.65
SF3A1-208ENST00000485618 DIEXFQ68CQ4 756 aaKnown RBP10.98□□□□□ -0.65
SF3A1-208ENST00000485618 PDGFDQ9GZP0 370 aaPredicted RBP10.98□□□□□ -0.65
SF3A1-208ENST00000485618 STK32BQ9NY57 414 aa10.98□□□□□ -0.65
SF3A1-208ENST00000485618 TXNRD1Q16881 649 aa10.97□□□□□ -0.65
SF3A1-208ENST00000485618 IFNL2Q8IZJ0 200 aa10.97□□□□□ -0.65
SF3A1-208ENST00000485618 PROM2Q8N271 834 aa10.97□□□□□ -0.65
SF3A1-208ENST00000485618 GAS2L2Q8NHY3 880 aa10.97□□□□□ -0.65
SF3A1-208ENST00000485618 KDRP35968 1356 aa10.96□□□□□ -0.65
SF3A1-208ENST00000485618 MAPK8IP3Q9UPT6 1336 aa10.96□□□□□ -0.65
SF3A1-208ENST00000485618 HMOX1P09601 288 aa10.96□□□□□ -0.65
SF3A1-208ENST00000485618 ATF5Q9Y2D1 282 aaPredicted RBP10.96□□□□□ -0.65
SF3A1-208ENST00000485618 NCAPD2Q15021 1401 aa10.95□□□□□ -0.66
SF3A1-208ENST00000485618 PTGER2P43116 358 aa10.95□□□□□ -0.66
SF3A1-208ENST00000485618 SLC15A2Q16348 729 aa10.95□□□□□ -0.66
SF3A1-208ENST00000485618 MRS2Q9HD23 443 aa10.95□□□□□ -0.66
SF3A1-208ENST00000485618 PAPPAQ13219 1627 aa10.95□□□□□ -0.66
SF3A1-208ENST00000485618 AKAP4Q5JQC9 854 aa10.94□□□□□ -0.66
SF3A1-208ENST00000485618 ZNF530Q6P9A1 599 aaPredicted RBP10.94□□□□□ -0.66
SF3A1-208ENST00000485618 AEBP1Q8IUX7 1158 aa10.94□□□□□ -0.66
SF3A1-208ENST00000485618 ACSBG1Q96GR2 724 aa10.94□□□□□ -0.66
SF3A1-208ENST00000485618 PRKAR2BP31323 418 aa10.93□□□□□ -0.66
SF3A1-208ENST00000485618 RTF1Q92541 710 aaKnown RBP10.93□□□□□ -0.66
SF3A1-208ENST00000485618 DCAF5Q96JK2 942 aa10.93□□□□□ -0.66
SF3A1-208ENST00000485618 FHDC1Q9C0D6 1143 aaPredicted RBP10.93□□□□□ -0.66
SF3A1-208ENST00000485618 MTFR1LQ9H019 292 aa10.93□□□□□ -0.66
SF3A1-208ENST00000485618 BTAF1O14981 1849 aa10.93□□□□□ -0.66
SF3A1-208ENST00000485618 NKX1-1Q15270 411 aaPredicted RBP10.92□□□□□ -0.66
SF3A1-208ENST00000485618 RSPH6AQ9H0K4 717 aa10.92□□□□□ -0.66
SF3A1-208ENST00000485618 MEGF6O75095 1541 aa10.92□□□□□ -0.66
SF3A1-208ENST00000485618 COL3A1P02461 1466 aaPredicted RBP10.92□□□□□ -0.66
SF3A1-208ENST00000485618 KAT6BQ8WYB5 2073 aa10.91□□□□□ -0.66
SF3A1-208ENST00000485618 GNAT3A8MTJ3 354 aa10.91□□□□□ -0.66
SF3A1-208ENST00000485618 ERVV-2B6SEH9 535 aa10.91□□□□□ -0.66
SF3A1-208ENST00000485618 CCER2I3L3R5 266 aa10.91□□□□□ -0.66
SF3A1-208ENST00000485618 HTATSF1O43719 755 aaKnown RBP10.91□□□□□ -0.66
SF3A1-208ENST00000485618 PHKG2P15735 406 aa10.91□□□□□ -0.66
SF3A1-208ENST00000485618 LMOD3Q0VAK6 560 aa10.91□□□□□ -0.66
SF3A1-208ENST00000485618 SYTL4Q96C24 671 aaPredicted RBP10.91□□□□□ -0.66
SF3A1-208ENST00000485618 SYT17Q9BSW7 474 aa10.91□□□□□ -0.66
SF3A1-208ENST00000485618 RGPD2P0DJD1 1756 aa10.9□□□□□ -0.66
SF3A1-208ENST00000485618 CYP27B1O15528 508 aa10.9□□□□□ -0.66
SF3A1-208ENST00000485618 RUNDC1Q96C34 613 aa10.9□□□□□ -0.66
SF3A1-208ENST00000485618 ADAMTS8Q9UP79 889 aa10.9□□□□□ -0.66
SF3A1-208ENST00000485618 PRIM1P49642 420 aaKnown RBP10.89□□□□□ -0.67
SF3A1-208ENST00000485618 CABP4P57796 275 aa10.89□□□□□ -0.67
SF3A1-208ENST00000485618 ZNF827Q17R98 1081 aa10.89□□□□□ -0.67
SF3A1-208ENST00000485618 MTHFSDQ2M296 383 aaKnown RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 151.2 ms