RNA–Protein interactions for RNA: ENST00000479300.1

VCP-205, Transcript of valosin containing protein, humanhuman

TSL 1 (best)

Gene VCP, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-205ENST00000479300 DOT1LQ8TEK3 1739 aa9.48□□□□□ -0.89
VCP-205ENST00000479300 GIGYF1O75420 1035 aaPredicted RBP9.48□□□□□ -0.89
VCP-205ENST00000479300 ATXN8OSP0DMR3 200 aa9.48□□□□□ -0.89
VCP-205ENST00000479300 KLHL34Q8N239 644 aa9.48□□□□□ -0.89
VCP-205ENST00000479300 SLC16A10Q8TF71 515 aa9.47□□□□□ -0.89
VCP-205ENST00000479300 KAT6BQ8WYB5 2073 aa9.46□□□□□ -0.89
VCP-205ENST00000479300 SLC27A3Q5K4L6 730 aa9.46□□□□□ -0.9
VCP-205ENST00000479300 SIN3AQ96ST3 1273 aa9.46□□□□□ -0.9
VCP-205ENST00000479300 ROCK2O75116 1388 aaKnown RBP9.46□□□□□ -0.9
VCP-205ENST00000479300 RGPD2P0DJD1 1756 aa9.45□□□□□ -0.9
VCP-205ENST00000479300 PRIM1P49642 420 aaKnown RBP9.45□□□□□ -0.9
VCP-205ENST00000479300 NEUROD1Q13562 356 aa9.45□□□□□ -0.9
VCP-205ENST00000479300 DDX54Q8TDD1 881 aaKnown RBP9.45□□□□□ -0.9
VCP-205ENST00000479300 SLC12A5Q9H2X9 1139 aa9.45□□□□□ -0.9
VCP-205ENST00000479300 ANKRD36BQ8N2N9 1353 aa9.45□□□□□ -0.9
VCP-205ENST00000479300 ATP10DQ9P241 1426 aa9.45□□□□□ -0.9
VCP-205ENST00000479300 MEGF6O75095 1541 aa9.45□□□□□ -0.9
VCP-205ENST00000479300 FBLN1P23142 703 aa9.44□□□□□ -0.9
VCP-205ENST00000479300 POLD1P28340 1107 aa9.44□□□□□ -0.9
VCP-205ENST00000479300 COL23A1Q86Y22 540 aaPredicted RBP9.44□□□□□ -0.9
VCP-205ENST00000479300 IP6K1Q92551 441 aa9.44□□□□□ -0.9
VCP-205ENST00000479300 PCGF6Q9BYE7 350 aa9.44□□□□□ -0.9
VCP-205ENST00000479300 TFCP2L1Q9NZI6 479 aa9.44□□□□□ -0.9
VCP-205ENST00000479300 A0A1W2PP64 1363 aa9.44□□□□□ -0.9
VCP-205ENST00000479300 EDC4Q6P2E9 1401 aaKnown RBP9.44□□□□□ -0.9
VCP-205ENST00000479300 ADCY9O60503 1353 aa9.43□□□□□ -0.9
VCP-205ENST00000479300 MSL1Q68DK7 614 aa9.43□□□□□ -0.9
VCP-205ENST00000479300 LTV1Q96GA3 475 aaPredicted RBP9.43□□□□□ -0.9
VCP-205ENST00000479300 TOGARAM1Q9Y4F4 1720 aa9.42□□□□□ -0.9
VCP-205ENST00000479300 MAP3K19Q56UN5 1328 aa9.42□□□□□ -0.9
VCP-205ENST00000479300 AMIGO3Q86WK7 504 aa9.42□□□□□ -0.9
VCP-205ENST00000479300 SYTL4Q96C24 671 aaPredicted RBP9.42□□□□□ -0.9
VCP-205ENST00000479300 ZEB1P37275 1124 aaPredicted RBP9.41□□□□□ -0.9
VCP-205ENST00000479300 CCNL1Q9UK58 526 aaPredicted RBP9.41□□□□□ -0.9
VCP-205ENST00000479300 C5P01031 1676 aa9.41□□□□□ -0.9
VCP-205ENST00000479300 HOXC9P31274 260 aa9.4□□□□□ -0.9
VCP-205ENST00000479300 SMIM5Q71RC9 77 aa9.4□□□□□ -0.9
VCP-205ENST00000479300 TMC1Q8TDI8 760 aa9.4□□□□□ -0.9
VCP-205ENST00000479300 U3KPZ7 1027 aaPredicted RBP9.4□□□□□ -0.9
VCP-205ENST00000479300 TAF1LQ8IZX4 1826 aa9.4□□□□□ -0.91
VCP-205ENST00000479300 GRIN3BO60391 1043 aa9.39□□□□□ -0.91
VCP-205ENST00000479300 ZCRB1Q8TBF4 217 aaKnown RBP9.39□□□□□ -0.91
VCP-205ENST00000479300 TONSLQ96HA7 1378 aa9.38□□□□□ -0.91
VCP-205ENST00000479300 NBPF6Q5VWK0 638 aa9.38□□□□□ -0.91
VCP-205ENST00000479300 HDGFL2Q7Z4V5 671 aaPredicted RBP9.38□□□□□ -0.91
VCP-205ENST00000479300 USHBP1Q8N6Y0 703 aa9.38□□□□□ -0.91
VCP-205ENST00000479300 NBPF4Q96M43 638 aa9.38□□□□□ -0.91
VCP-205ENST00000479300 C4BP0C0L5 1744 aa9.37□□□□□ -0.91
VCP-205ENST00000479300 HSPA6P17066 643 aa9.37□□□□□ -0.91
VCP-205ENST00000479300 TRIM26Q12899 539 aaPredicted RBP9.37□□□□□ -0.91
VCP-205ENST00000479300 ZNF526Q8TF50 670 aaPredicted RBP9.37□□□□□ -0.91
VCP-205ENST00000479300 WWC3Q9ULE0 1092 aa9.37□□□□□ -0.91
VCP-205ENST00000479300 CD2APQ9Y5K6 639 aa9.37□□□□□ -0.91
VCP-205ENST00000479300 USP47Q96K76 1375 aa9.37□□□□□ -0.91
VCP-205ENST00000479300 UBR3Q6ZT12 1888 aa9.36□□□□□ -0.91
VCP-205ENST00000479300 FKBP8Q14318 412 aa9.36□□□□□ -0.91
VCP-205ENST00000479300 RRS1Q15050 365 aaKnown RBP9.36□□□□□ -0.91
VCP-205ENST00000479300 TESK2Q96S53 571 aa9.36□□□□□ -0.91
VCP-205ENST00000479300 CARD11Q9BXL7 1154 aa9.36□□□□□ -0.91
VCP-205ENST00000479300 GPBP1L1Q9HC44 474 aaPredicted RBP9.36□□□□□ -0.91
VCP-205ENST00000479300 TERF2IPQ9NYB0 399 aa9.36□□□□□ -0.91
VCP-205ENST00000479300 KIAA1551Q9HCM1 1747 aa9.36□□□□□ -0.91
VCP-205ENST00000479300 PALLDQ8WX93 1383 aa9.36□□□□□ -0.91
VCP-205ENST00000479300 MAP2P11137 1827 aaKnown RBP9.35□□□□□ -0.91
VCP-205ENST00000479300 KIF3CO14782 793 aa9.35□□□□□ -0.91
VCP-205ENST00000479300 CYP27B1O15528 508 aa9.35□□□□□ -0.91
VCP-205ENST00000479300 ITGB4P16144 1822 aa9.35□□□□□ -0.91
VCP-205ENST00000479300 RTL1A6NKG5 1358 aa9.35□□□□□ -0.91
VCP-205ENST00000479300 CICQ96RK0 1608 aaPredicted RBP9.34□□□□□ -0.91
VCP-205ENST00000479300 IGSF1Q8N6C5 1336 aa9.34□□□□□ -0.91
VCP-205ENST00000479300 AMPHP49418 695 aa9.34□□□□□ -0.91
VCP-205ENST00000479300 COG3Q96JB2 828 aa9.34□□□□□ -0.91
VCP-205ENST00000479300 PUS7Q96PZ0 661 aaKnown RBP9.34□□□□□ -0.91
VCP-205ENST00000479300 PKD1L3Q7Z443 1732 aa9.33□□□□□ -0.92
VCP-205ENST00000479300 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.32□□□□□ -0.92
VCP-205ENST00000479300 FYB1O15117 783 aa9.32□□□□□ -0.92
VCP-205ENST00000479300 HSP90AB2PQ58FF8 381 aa9.32□□□□□ -0.92
VCP-205ENST00000479300 MPRIPQ6WCQ1 1025 aa9.32□□□□□ -0.92
VCP-205ENST00000479300 DNAJC5GQ8N7S2 189 aa9.32□□□□□ -0.92
VCP-205ENST00000479300 LINC00116Q8NCU8 138 aa9.32□□□□□ -0.92
VCP-205ENST00000479300 PIGBQ92521 554 aa9.32□□□□□ -0.92
VCP-205ENST00000479300 GGNBP2Q9H3C7 697 aa9.32□□□□□ -0.92
VCP-205ENST00000479300 CGNL1Q0VF96 1302 aa9.31□□□□□ -0.92
VCP-205ENST00000479300 NCAPD2Q15021 1401 aa9.31□□□□□ -0.92
VCP-205ENST00000479300 SLC24A1O60721 1099 aa9.31□□□□□ -0.92
VCP-205ENST00000479300 PHF14O94880 888 aa9.31□□□□□ -0.92
VCP-205ENST00000479300 FLAD1Q8NFF5 587 aa9.31□□□□□ -0.92
VCP-205ENST00000479300 RAPGEF4Q8WZA2 1011 aa9.31□□□□□ -0.92
VCP-205ENST00000479300 RTN4Q9NQC3 1192 aaKnown RBP9.31□□□□□ -0.92
VCP-205ENST00000479300 INSRP06213 1382 aa9.31□□□□□ -0.92
VCP-205ENST00000479300 PXDNLA1KZ92 1463 aa9.31□□□□□ -0.92
VCP-205ENST00000479300 KIF13BQ9NQT8 1826 aa9.31□□□□□ -0.92
VCP-205ENST00000479300 PCDH11XQ9BZA7 1347 aa9.31□□□□□ -0.92
VCP-205ENST00000479300 PCDH11YQ9BZA8 1340 aa9.31□□□□□ -0.92
VCP-205ENST00000479300 ST20-MTHFSA0A0A6YYL1 179 aa9.3□□□□□ -0.92
VCP-205ENST00000479300 TATP17735 454 aaPredicted RBP9.3□□□□□ -0.92
VCP-205ENST00000479300 ITPK1Q13572 414 aa9.3□□□□□ -0.92
VCP-205ENST00000479300 N4BP2Q86UW6 1770 aaPredicted RBP9.29□□□□□ -0.92
VCP-205ENST00000479300 NKX1-1Q15270 411 aaPredicted RBP9.29□□□□□ -0.92
VCP-205ENST00000479300 AK7Q96M32 723 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms