RNA–Protein interactions for RNA: ENST00000477561.5

HDAC6-221, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-221ENST00000477561 MEGF6O75095 1541 aa11.32□□□□□ -0.6
HDAC6-221ENST00000477561 RAPGEF4Q8WZA2 1011 aa11.32□□□□□ -0.6
HDAC6-221ENST00000477561 BCL9O00512 1426 aa11.32□□□□□ -0.6
HDAC6-221ENST00000477561 SBF2Q86WG5 1849 aa11.32□□□□□ -0.6
HDAC6-221ENST00000477561 PLSCR1O15162 318 aa11.31□□□□□ -0.6
HDAC6-221ENST00000477561 TATP17735 454 aaPredicted RBP11.31□□□□□ -0.6
HDAC6-221ENST00000477561 SRCAPQ6ZRS2 3230 aa11.31□□□□□ -0.6
HDAC6-221ENST00000477561 MAP2P11137 1827 aaKnown RBP11.3□□□□□ -0.6
HDAC6-221ENST00000477561 NSD2O96028 1365 aa11.3□□□□□ -0.6
HDAC6-221ENST00000477561 PARD3Q8TEW0 1356 aa11.3□□□□□ -0.6
HDAC6-221ENST00000477561 EIF4A2Q14240 407 aaKnown RBP11.3□□□□□ -0.6
HDAC6-221ENST00000477561 AMER1Q5JTC6 1135 aaPredicted RBP11.3□□□□□ -0.6
HDAC6-221ENST00000477561 CC2D1BQ5T0F9 858 aaKnown RBP11.3□□□□□ -0.6
HDAC6-221ENST00000477561 PROM2Q8N271 834 aa11.3□□□□□ -0.6
HDAC6-221ENST00000477561 SYTL4Q96C24 671 aaPredicted RBP11.3□□□□□ -0.6
HDAC6-221ENST00000477561 EYA1Q99502 592 aa11.3□□□□□ -0.6
HDAC6-221ENST00000477561 ANKRD26Q9UPS8 1709 aa11.29□□□□□ -0.6
HDAC6-221ENST00000477561 PER1O15534 1290 aaPredicted RBP11.29□□□□□ -0.6
HDAC6-221ENST00000477561 PRIM1P49642 420 aaKnown RBP11.29□□□□□ -0.6
HDAC6-221ENST00000477561 NBPF14Q5TI25 921 aa11.29□□□□□ -0.6
HDAC6-221ENST00000477561 TXNRD1Q16881 649 aa11.28□□□□□ -0.6
HDAC6-221ENST00000477561 RREB1Q92766 1687 aa11.27□□□□□ -0.6
HDAC6-221ENST00000477561 NUP188Q5SRE5 1749 aa11.27□□□□□ -0.61
HDAC6-221ENST00000477561 NHSQ6T4R5 1651 aa11.27□□□□□ -0.61
HDAC6-221ENST00000477561 CYP27B1O15528 508 aa11.26□□□□□ -0.61
HDAC6-221ENST00000477561 ANO8Q9HCE9 1232 aaPredicted RBP11.26□□□□□ -0.61
HDAC6-221ENST00000477561 SHANK3Q9BYB0 1731 aa11.26□□□□□ -0.61
HDAC6-221ENST00000477561 KAT6BQ8WYB5 2073 aa11.25□□□□□ -0.61
HDAC6-221ENST00000477561 PCDH11XQ9BZA7 1347 aa11.25□□□□□ -0.61
HDAC6-221ENST00000477561 PCDH11YQ9BZA8 1340 aa11.25□□□□□ -0.61
HDAC6-221ENST00000477561 MTHFSP49914 203 aa11.24□□□□□ -0.61
HDAC6-221ENST00000477561 KCNQ4P56696 695 aa11.24□□□□□ -0.61
HDAC6-221ENST00000477561 SPG7Q9UQ90 795 aa11.24□□□□□ -0.61
HDAC6-221ENST00000477561 NCAPD2Q15021 1401 aa11.24□□□□□ -0.61
HDAC6-221ENST00000477561 BTAF1O14981 1849 aa11.23□□□□□ -0.61
HDAC6-221ENST00000477561 MPRIPQ6WCQ1 1025 aa11.23□□□□□ -0.61
HDAC6-221ENST00000477561 AEBP1Q8IUX7 1158 aa11.23□□□□□ -0.61
HDAC6-221ENST00000477561 PDGFDQ9GZP0 370 aaPredicted RBP11.23□□□□□ -0.61
HDAC6-221ENST00000477561 LRRC4BQ9NT99 713 aa11.23□□□□□ -0.61
HDAC6-221ENST00000477561 STK32BQ9NY57 414 aa11.23□□□□□ -0.61
HDAC6-221ENST00000477561 IGSF1Q8N6C5 1336 aa11.23□□□□□ -0.61
HDAC6-221ENST00000477561 DOT1LQ8TEK3 1739 aa11.23□□□□□ -0.61
HDAC6-221ENST00000477561 RGPD3A6NKT7 1758 aaPredicted RBP11.22□□□□□ -0.61
HDAC6-221ENST00000477561 NPM3O75607 178 aaKnown RBP11.22□□□□□ -0.61
HDAC6-221ENST00000477561 IL13P35225 146 aa11.22□□□□□ -0.61
HDAC6-221ENST00000477561 SULT6B1Q6IMI4 303 aa11.22□□□□□ -0.61
HDAC6-221ENST00000477561 RGPD4Q7Z3J3 1758 aa11.22□□□□□ -0.61
HDAC6-221ENST00000477561 SLC15A2Q16348 729 aa11.21□□□□□ -0.61
HDAC6-221ENST00000477561 PHKG2P15735 406 aa11.2□□□□□ -0.62
HDAC6-221ENST00000477561 IFNL2Q8IZJ0 200 aa11.2□□□□□ -0.62
HDAC6-221ENST00000477561 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.2□□□□□ -0.621e-11■■□□□ 11.5
HDAC6-221ENST00000477561 PKD1L3Q7Z443 1732 aa11.19□□□□□ -0.62
HDAC6-221ENST00000477561 ZNF316A6NFI3 1004 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-221ENST00000477561 ZBTB7AO95365 584 aa11.19□□□□□ -0.62
HDAC6-221ENST00000477561 HMOX1P09601 288 aa11.19□□□□□ -0.62
HDAC6-221ENST00000477561 NKX1-1Q15270 411 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-221ENST00000477561 ZNF827Q17R98 1081 aa11.19□□□□□ -0.62
HDAC6-221ENST00000477561 PLEKHO1Q53GL0 409 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-221ENST00000477561 CCNL1Q9UK58 526 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-221ENST00000477561 NPC1L1Q9UHC9 1359 aa11.18□□□□□ -0.62
HDAC6-221ENST00000477561 DIAPH1O60610 1272 aaKnown RBP11.18□□□□□ -0.62
HDAC6-221ENST00000477561 SLC27A3Q5K4L6 730 aa11.18□□□□□ -0.62
HDAC6-221ENST00000477561 ZNF530Q6P9A1 599 aaPredicted RBP11.18□□□□□ -0.62
HDAC6-221ENST00000477561 PIGBQ92521 554 aa11.18□□□□□ -0.62
HDAC6-221ENST00000477561 ATF5Q9Y2D1 282 aaPredicted RBP11.18□□□□□ -0.62
HDAC6-221ENST00000477561 LRP5O75197 1615 aa11.17□□□□□ -0.62
HDAC6-221ENST00000477561 U2SURPO15042 1029 aaKnown RBP11.17□□□□□ -0.62
HDAC6-221ENST00000477561 SPON1Q9HCB6 807 aa11.17□□□□□ -0.62
HDAC6-221ENST00000477561 TMOD3Q9NYL9 352 aa11.17□□□□□ -0.62
HDAC6-221ENST00000477561 TOGARAM1Q9Y4F4 1720 aa11.17□□□□□ -0.62
HDAC6-221ENST00000477561 PALLDQ8WX93 1383 aa11.16□□□□□ -0.62
HDAC6-221ENST00000477561 AMOTQ4VCS5 1084 aa11.16□□□□□ -0.62
HDAC6-221ENST00000477561 AKT1S1Q96B36 256 aa11.16□□□□□ -0.62
HDAC6-221ENST00000477561 PPP2R1AP30153 589 aa11.15□□□□□ -0.62
HDAC6-221ENST00000477561 C1orf141Q5JVX7 400 aa11.15□□□□□ -0.62
HDAC6-221ENST00000477561 SMARCC1Q92922 1105 aaPredicted RBP11.15□□□□□ -0.62
HDAC6-221ENST00000477561 TFCP2L1Q9NZI6 479 aa11.15□□□□□ -0.62
HDAC6-221ENST00000477561 PPP1R1BQ9UD71 204 aaPredicted RBP11.15□□□□□ -0.62
HDAC6-221ENST00000477561 ASAP1Q9ULH1 1129 aa11.15□□□□□ -0.62
HDAC6-221ENST00000477561 PAPPAQ13219 1627 aa11.15□□□□□ -0.62
HDAC6-221ENST00000477561 KDRP35968 1356 aa11.15□□□□□ -0.63
HDAC6-221ENST00000477561 ITGB4P16144 1822 aa11.14□□□□□ -0.63
HDAC6-221ENST00000477561 CASZ1Q86V15 1759 aa11.14□□□□□ -0.63
HDAC6-221ENST00000477561 HSP90AB1P08238 724 aaKnown RBP11.14□□□□□ -0.63
HDAC6-221ENST00000477561 CABP4P57796 275 aa11.14□□□□□ -0.63
HDAC6-221ENST00000477561 DCAF5Q96JK2 942 aa11.14□□□□□ -0.63
HDAC6-221ENST00000477561 LY75O60449 1722 aa11.14□□□□□ -0.63
HDAC6-221ENST00000477561 ERVV-2B6SEH9 535 aa11.13□□□□□ -0.63
HDAC6-221ENST00000477561 DDX10Q13206 875 aaKnown RBP11.13□□□□□ -0.63
HDAC6-221ENST00000477561 CFAP53Q96M91 514 aa11.13□□□□□ -0.63
HDAC6-221ENST00000477561 ATG3Q9NT62 314 aa11.13□□□□□ -0.63
HDAC6-221ENST00000477561 COL3A1P02461 1466 aaPredicted RBP11.12□□□□□ -0.63
HDAC6-221ENST00000477561 PNPLA7Q6ZV29 1317 aa11.12□□□□□ -0.63
HDAC6-221ENST00000477561 KDM6AO15550 1401 aaPredicted RBP11.12□□□□□ -0.63
HDAC6-221ENST00000477561 PTGER2P43116 358 aa11.12□□□□□ -0.63
HDAC6-221ENST00000477561 MTHFSDQ2M296 383 aaKnown RBP11.12□□□□□ -0.63
HDAC6-221ENST00000477561 SMIM5Q71RC9 77 aa11.12□□□□□ -0.63
HDAC6-221ENST00000477561 MTFR1LQ9H019 292 aa11.12□□□□□ -0.63
HDAC6-221ENST00000477561 LGR6Q9HBX8 967 aa11.12□□□□□ -0.63
HDAC6-221ENST00000477561 PLEKHG2Q9H7P9 1386 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 106.3 ms