RNA–Protein interactions for RNA: ENST00000477243.1

HMGN4-202, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

TSL 3

Gene HMGN4, Length 113 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-202ENST00000477243 RASA1P20936 1047 aa3.89□□□□□ -1.79
HMGN4-202ENST00000477243 USP46P62068 366 aa3.89□□□□□ -1.79
HMGN4-202ENST00000477243 XPCQ01831 940 aaPredicted RBP3.89□□□□□ -1.79
HMGN4-202ENST00000477243 TAGLNQ01995 201 aaKnown RBP3.89□□□□□ -1.79
HMGN4-202ENST00000477243 C9orf131Q5VYM1 1079 aa3.89□□□□□ -1.79
HMGN4-202ENST00000477243 USP17L2Q6R6M4 530 aa3.89□□□□□ -1.79
HMGN4-202ENST00000477243 USP17L1Q7RTZ2 530 aa3.89□□□□□ -1.79
HMGN4-202ENST00000477243 DHX38Q92620 1227 aaKnown RBP3.89□□□□□ -1.79
HMGN4-202ENST00000477243 RNF34Q969K3 372 aa3.89□□□□□ -1.79
HMGN4-202ENST00000477243 GPATCH3Q96I76 525 aa3.89□□□□□ -1.79
HMGN4-202ENST00000477243 CCDC136Q96JN2 1154 aa3.89□□□□□ -1.79
HMGN4-202ENST00000477243 TINF2Q9BSI4 451 aa3.89□□□□□ -1.79
HMGN4-202ENST00000477243 CAPN10Q9HC96 672 aa3.89□□□□□ -1.79
HMGN4-202ENST00000477243 MRS2Q9HD23 443 aa3.89□□□□□ -1.79
HMGN4-202ENST00000477243 HMX1Q9NP08 348 aaPredicted RBP3.89□□□□□ -1.79
HMGN4-202ENST00000477243 MKRN1Q9UHC7 482 aaKnown RBP3.89□□□□□ -1.79
HMGN4-202ENST00000477243 NAV2Q8IVL1 2488 aa3.89□□□□□ -1.79
HMGN4-202ENST00000477243 MYO15BQ96JP2 1530 aa3.89□□□□□ -1.79
HMGN4-202ENST00000477243 CCDC194A0A1B0GVG4 234 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 H3BRB1 525 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 PARNO95453 639 aaKnown RBP3.88□□□□□ -1.79
HMGN4-202ENST00000477243 CENPBP07199 599 aaPredicted RBP3.88□□□□□ -1.79
HMGN4-202ENST00000477243 HSPA1AP0DMV8 641 aaKnown RBP3.88□□□□□ -1.79
HMGN4-202ENST00000477243 HSPA1BP0DMV9 641 aaKnown RBP3.88□□□□□ -1.79
HMGN4-202ENST00000477243 SKIP12755 728 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 RAD51AP2Q09MP3 1159 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 PTK7Q13308 1070 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 RALBP1Q15311 655 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 NFE2L2Q16236 605 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 TYW1BQ6NUM6 668 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 PADI6Q6TGC4 694 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 VPS37DQ86XT2 251 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 ANKMY2Q8IV38 441 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 SLF2Q8IX21 1173 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 RGL4Q8IZJ4 473 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 CABLES1Q8TDN4 633 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 COL25A1Q9BXS0 654 aaPredicted RBP3.88□□□□□ -1.79
HMGN4-202ENST00000477243 TUT1Q9H6E5 874 aaKnown RBP3.88□□□□□ -1.79
HMGN4-202ENST00000477243 CHPF2Q9P2E5 772 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 FAN1Q9Y2M0 1017 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 KDM5CP41229 1560 aa3.88□□□□□ -1.79
HMGN4-202ENST00000477243 KIF21AQ7Z4S6 1674 aa3.87□□□□□ -1.79
HMGN4-202ENST00000477243 RP1L1Q8IWN7 2480 aaPredicted RBP3.87□□□□□ -1.79
HMGN4-202ENST00000477243 UTRNP46939 3433 aa3.87□□□□□ -1.79
HMGN4-202ENST00000477243 USP17L5A8MUK1 530 aa3.87□□□□□ -1.79
HMGN4-202ENST00000477243 PPP1R12AO14974 1030 aaPredicted RBP3.87□□□□□ -1.79
HMGN4-202ENST00000477243 TNRC18O15417 2968 aaPredicted RBP3.87□□□□□ -1.79
HMGN4-202ENST00000477243 C21orf2O43822 256 aa3.87□□□□□ -1.79
HMGN4-202ENST00000477243 PEX14O75381 377 aa3.87□□□□□ -1.79
HMGN4-202ENST00000477243 MAP4K4O95819 1239 aaPredicted RBP3.87□□□□□ -1.79
HMGN4-202ENST00000477243 FKBP4Q02790 459 aaKnown RBP eCLIP3.87□□□□□ -1.79
HMGN4-202ENST00000477243 ARID5AQ03989 594 aa3.87□□□□□ -1.79
HMGN4-202ENST00000477243 PSME1Q06323 249 aa3.87□□□□□ -1.79
HMGN4-202ENST00000477243 NR1H3Q13133 447 aa3.87□□□□□ -1.79
HMGN4-202ENST00000477243 SF3B2Q13435 895 aaKnown RBP3.87□□□□□ -1.79
HMGN4-202ENST00000477243 CRTC2Q53ET0 693 aaPredicted RBP3.87□□□□□ -1.79
HMGN4-202ENST00000477243 ZNF746Q6NUN9 644 aaPredicted RBP3.87□□□□□ -1.79
HMGN4-202ENST00000477243 TAS1R3Q7RTX0 852 aa3.87□□□□□ -1.79
HMGN4-202ENST00000477243 METTL16Q86W50 562 aaKnown RBP3.87□□□□□ -1.79
HMGN4-202ENST00000477243 TTC13Q8NBP0 860 aa3.87□□□□□ -1.79
HMGN4-202ENST00000477243 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.87□□□□□ -1.79
HMGN4-202ENST00000477243 PMFBP1Q8TBY8 1022 aa3.87□□□□□ -1.79
HMGN4-202ENST00000477243 TMEM121BQ9BXQ6 578 aaPredicted RBP3.87□□□□□ -1.79
HMGN4-202ENST00000477243 PRDM10Q9NQV6 1147 aa3.87□□□□□ -1.79
HMGN4-202ENST00000477243 GEMIN8Q9NWZ8 242 aaKnown RBP3.87□□□□□ -1.79
HMGN4-202ENST00000477243 KLHL42Q9P2K6 505 aa3.87□□□□□ -1.79
HMGN4-202ENST00000477243 GPR179Q6PRD1 2367 aa3.87□□□□□ -1.79
HMGN4-202ENST00000477243 MRC2Q9UBG0 1479 aa3.86□□□□□ -1.79
HMGN4-202ENST00000477243 CCDC85CA6NKD9 419 aa3.86□□□□□ -1.79
HMGN4-202ENST00000477243 DDX11L8A8MPP1 907 aa3.86□□□□□ -1.79
HMGN4-202ENST00000477243 PITPNM1O00562 1244 aa3.86□□□□□ -1.79
HMGN4-202ENST00000477243 FDX1P10109 184 aa3.86□□□□□ -1.79
HMGN4-202ENST00000477243 PTMSP20962 102 aa3.86□□□□□ -1.79
HMGN4-202ENST00000477243 DNAJA1P31689 397 aaKnown RBP3.86□□□□□ -1.79
HMGN4-202ENST00000477243 MTMR2Q13614 643 aa3.86□□□□□ -1.79
HMGN4-202ENST00000477243 TCEAL1Q15170 157 aa3.86□□□□□ -1.79
HMGN4-202ENST00000477243 SPTY2D1Q68D10 685 aaPredicted RBP3.86□□□□□ -1.79
HMGN4-202ENST00000477243 PTCD2Q8WV60 388 aaKnown RBP3.86□□□□□ -1.79
HMGN4-202ENST00000477243 TSC1Q92574 1164 aa3.86□□□□□ -1.79
HMGN4-202ENST00000477243 MRFAP1L1Q96HT8 127 aa3.86□□□□□ -1.79
HMGN4-202ENST00000477243 OSBPL2Q9H1P3 480 aa3.86□□□□□ -1.79
HMGN4-202ENST00000477243 SLAIN2Q9P270 581 aa3.86□□□□□ -1.79
HMGN4-202ENST00000477243 IQSEC3Q9UPP2 1182 aaPredicted RBP3.86□□□□□ -1.79
HMGN4-202ENST00000477243 RBM19Q9Y4C8 960 aaKnown RBP3.86□□□□□ -1.79
HMGN4-202ENST00000477243 PTPRKQ15262 1439 aa3.86□□□□□ -1.79
HMGN4-202ENST00000477243 FAM83GA6ND36 823 aa3.85□□□□□ -1.79
HMGN4-202ENST00000477243 RCCD1A6NED2 376 aa3.85□□□□□ -1.79
HMGN4-202ENST00000477243 SORBS3O60504 671 aa3.85□□□□□ -1.79
HMGN4-202ENST00000477243 STK10O94804 968 aaKnown RBP3.85□□□□□ -1.79
HMGN4-202ENST00000477243 ZNF76P36508 570 aa3.85□□□□□ -1.79
HMGN4-202ENST00000477243 ATP1A2P50993 1020 aa3.85□□□□□ -1.79
HMGN4-202ENST00000477243 TRIM50Q86XT4 487 aa3.85□□□□□ -1.79
HMGN4-202ENST00000477243 LRRN4Q8WUT4 740 aa3.85□□□□□ -1.79
HMGN4-202ENST00000477243 CHMP7Q8WUX9 453 aaPredicted RBP3.85□□□□□ -1.79
HMGN4-202ENST00000477243 PLCD4Q9BRC7 762 aa3.85□□□□□ -1.79
HMGN4-202ENST00000477243 PIF1Q9H611 641 aa3.85□□□□□ -1.79
HMGN4-202ENST00000477243 SPC25Q9HBM1 224 aa3.85□□□□□ -1.79
HMGN4-202ENST00000477243 TERF2IPQ9NYB0 399 aa3.85□□□□□ -1.79
HMGN4-202ENST00000477243 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.85□□□□□ -1.79
HMGN4-202ENST00000477243 BOLA1Q9Y3E2 137 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms