RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-206ENST00000474215 TXNRD1Q16881 649 aa15.31■□□□□ 0.04
CKS1B-206ENST00000474215 RGPD2P0DJD1 1756 aa15.31■□□□□ 0.04
CKS1B-206ENST00000474215 RREB1Q92766 1687 aa15.3■□□□□ 0.04
CKS1B-206ENST00000474215 MSH5O43196 834 aa15.29■□□□□ 0.04
CKS1B-206ENST00000474215 AMER1Q5JTC6 1135 aaPredicted RBP15.29■□□□□ 0.04
CKS1B-206ENST00000474215 EYA1Q99502 592 aa15.29■□□□□ 0.04
CKS1B-206ENST00000474215 PER1O15534 1290 aaPredicted RBP15.28■□□□□ 0.04
CKS1B-206ENST00000474215 PRIM1P49642 420 aaKnown RBP15.28■□□□□ 0.04
CKS1B-206ENST00000474215 EIF4A2Q14240 407 aaKnown RBP15.28■□□□□ 0.04
CKS1B-206ENST00000474215 MAP2P11137 1827 aaKnown RBP15.28■□□□□ 0.04
CKS1B-206ENST00000474215 RGPD3A6NKT7 1758 aaPredicted RBP15.28■□□□□ 0.04
CKS1B-206ENST00000474215 RGPD4Q7Z3J3 1758 aa15.28■□□□□ 0.04
CKS1B-206ENST00000474215 NUP188Q5SRE5 1749 aa15.28■□□□□ 0.04
CKS1B-206ENST00000474215 NHSQ6T4R5 1651 aa15.28■□□□□ 0.04
CKS1B-206ENST00000474215 ANKRD26Q9UPS8 1709 aa15.27■□□□□ 0.04
CKS1B-206ENST00000474215 SYTL4Q96C24 671 aaPredicted RBP15.27■□□□□ 0.04
CKS1B-206ENST00000474215 NCAPD2Q15021 1401 aa15.26■□□□□ 0.03
CKS1B-206ENST00000474215 PCDH11XQ9BZA7 1347 aa15.26■□□□□ 0.03
CKS1B-206ENST00000474215 PCDH11YQ9BZA8 1340 aa15.26■□□□□ 0.03
CKS1B-206ENST00000474215 ANO8Q9HCE9 1232 aaPredicted RBP15.25■□□□□ 0.03
CKS1B-206ENST00000474215 SPG7Q9UQ90 795 aa15.25■□□□□ 0.03
CKS1B-206ENST00000474215 CYP27B1O15528 508 aa15.24■□□□□ 0.03
CKS1B-206ENST00000474215 STK32BQ9NY57 414 aa15.24■□□□□ 0.03
CKS1B-206ENST00000474215 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.24■□□□□ 0.03
CKS1B-206ENST00000474215 IGSF1Q8N6C5 1336 aa15.22■□□□□ 0.03
CKS1B-206ENST00000474215 LRP5O75197 1615 aa15.22■□□□□ 0.03
CKS1B-206ENST00000474215 SLC15A2Q16348 729 aa15.22■□□□□ 0.03
CKS1B-206ENST00000474215 SLC27A3Q5K4L6 730 aa15.22■□□□□ 0.03
CKS1B-206ENST00000474215 LRRC4BQ9NT99 713 aa15.22■□□□□ 0.03
CKS1B-206ENST00000474215 SHANK3Q9BYB0 1731 aa15.22■□□□□ 0.03
CKS1B-206ENST00000474215 NKX1-1Q15270 411 aaPredicted RBP15.21■□□□□ 0.03
CKS1B-206ENST00000474215 CC2D1BQ5T0F9 858 aaKnown RBP15.21■□□□□ 0.03
CKS1B-206ENST00000474215 BTAF1O14981 1849 aa15.21■□□□□ 0.03
CKS1B-206ENST00000474215 MTHFSP49914 203 aa15.2■□□□□ 0.02
CKS1B-206ENST00000474215 SPON1Q9HCB6 807 aa15.2■□□□□ 0.02
CKS1B-206ENST00000474215 KAT6BQ8WYB5 2073 aa15.19■□□□□ 0.02
CKS1B-206ENST00000474215 NPC1L1Q9UHC9 1359 aa15.19■□□□□ 0.02
CKS1B-206ENST00000474215 DOT1LQ8TEK3 1739 aa15.18■□□□□ 0.02
CKS1B-206ENST00000474215 PHKG2P15735 406 aa15.18■□□□□ 0.02
CKS1B-206ENST00000474215 IL13P35225 146 aa15.18■□□□□ 0.02
CKS1B-206ENST00000474215 MPRIPQ6WCQ1 1025 aa15.18■□□□□ 0.02
CKS1B-206ENST00000474215 POTEDQ86YR6 584 aa15.18■□□□□ 0.02
CKS1B-206ENST00000474215 IFNL2Q8IZJ0 200 aa15.18■□□□□ 0.02
CKS1B-206ENST00000474215 PDGFDQ9GZP0 370 aaPredicted RBP15.18■□□□□ 0.02
CKS1B-206ENST00000474215 PLEKHG2Q9H7P9 1386 aa15.18■□□□□ 0.02
CKS1B-206ENST00000474215 KCNQ4P56696 695 aa15.17■□□□□ 0.02
CKS1B-206ENST00000474215 PLEKHO1Q53GL0 409 aaPredicted RBP15.17■□□□□ 0.02
CKS1B-206ENST00000474215 PKD1L3Q7Z443 1732 aa15.17■□□□□ 0.02
CKS1B-206ENST00000474215 CNGB1Q14028 1251 aaPredicted RBP15.16■□□□□ 0.02
CKS1B-206ENST00000474215 ZNF827Q17R98 1081 aa15.16■□□□□ 0.02
CKS1B-206ENST00000474215 SULT6B1Q6IMI4 303 aa15.16■□□□□ 0.02
CKS1B-206ENST00000474215 AEBP1Q8IUX7 1158 aa15.16■□□□□ 0.02
CKS1B-206ENST00000474215 AKT1S1Q96B36 256 aa15.16■□□□□ 0.02
CKS1B-206ENST00000474215 CCNL1Q9UK58 526 aaPredicted RBP15.16■□□□□ 0.02
CKS1B-206ENST00000474215 ZBTB7AO95365 584 aa15.15■□□□□ 0.02
CKS1B-206ENST00000474215 AMOTQ4VCS5 1084 aa15.15■□□□□ 0.02
CKS1B-206ENST00000474215 PIGBQ92521 554 aa15.15■□□□□ 0.02
CKS1B-206ENST00000474215 SMARCC1Q92922 1105 aaPredicted RBP15.14■□□□□ 0.01
CKS1B-206ENST00000474215 DIAPH1O60610 1272 aaKnown RBP15.13■□□□□ 0.01
CKS1B-206ENST00000474215 HMGB2P26583 209 aaKnown RBP15.13■□□□□ 0.01
CKS1B-206ENST00000474215 TMOD3Q9NYL9 352 aa15.13■□□□□ 0.01
CKS1B-206ENST00000474215 TFCP2L1Q9NZI6 479 aa15.13■□□□□ 0.01
CKS1B-206ENST00000474215 PPP1R1BQ9UD71 204 aaPredicted RBP15.13■□□□□ 0.01
CKS1B-206ENST00000474215 ATF5Q9Y2D1 282 aaPredicted RBP15.13■□□□□ 0.01
CKS1B-206ENST00000474215 PAPPAQ13219 1627 aa15.13■□□□□ 0.01
CKS1B-206ENST00000474215 KDRP35968 1356 aa15.12■□□□□ 0.01
CKS1B-206ENST00000474215 HSP90AB1P08238 724 aaKnown RBP15.12■□□□□ 0.01
CKS1B-206ENST00000474215 ZNF530Q6P9A1 599 aaPredicted RBP15.12■□□□□ 0.01
CKS1B-206ENST00000474215 DCAF5Q96JK2 942 aa15.12■□□□□ 0.01
CKS1B-206ENST00000474215 MTFR1LQ9H019 292 aa15.12■□□□□ 0.01
CKS1B-206ENST00000474215 PALLDQ8WX93 1383 aa15.11■□□□□ 0.01
CKS1B-206ENST00000474215 CASZ1Q86V15 1759 aa15.11■□□□□ 0.01
CKS1B-206ENST00000474215 ERVV-2B6SEH9 535 aa15.11■□□□□ 0.01
CKS1B-206ENST00000474215 LY75O60449 1722 aa15.1■□□□□ 0.01
CKS1B-206ENST00000474215 PTGER2P43116 358 aa15.1■□□□□ 0.01
CKS1B-206ENST00000474215 C1orf141Q5JVX7 400 aa15.1■□□□□ 0.01
CKS1B-206ENST00000474215 TOGARAM1Q9Y4F4 1720 aa15.09■□□□□ 0.01
CKS1B-206ENST00000474215 HMOX1P09601 288 aa15.09■□□□□ 0.01
CKS1B-206ENST00000474215 SLC16A10Q8TF71 515 aa15.09■□□□□ 0.01
CKS1B-206ENST00000474215 ASAP1Q9ULH1 1129 aa15.09■□□□□ 0.01
CKS1B-206ENST00000474215 PNPLA7Q6ZV29 1317 aa15.09■□□□□ 0.01
CKS1B-206ENST00000474215 ATG3Q9NT62 314 aa15.08■□□□□ 0
CKS1B-206ENST00000474215 LOC102724428A0A0B4J2F2 783 aa15.07■□□□□ 0
CKS1B-206ENST00000474215 SIK1P57059 783 aa15.07■□□□□ 0
CKS1B-206ENST00000474215 CABP4P57796 275 aa15.07■□□□□ 0
CKS1B-206ENST00000474215 SGIP1Q9BQI5 828 aa15.07■□□□□ 0
CKS1B-206ENST00000474215 ITGB4P16144 1822 aa15.07■□□□□ 0
CKS1B-206ENST00000474215 AKAP4Q5JQC9 854 aa15.06■□□□□ 0
CKS1B-206ENST00000474215 CFAP53Q96M91 514 aa15.06■□□□□ 0
CKS1B-206ENST00000474215 U2SURPO15042 1029 aaKnown RBP15.05■□□□□ -0
CKS1B-206ENST00000474215 PPP2R1AP30153 589 aa15.05■□□□□ -0
CKS1B-206ENST00000474215 KDM6AO15550 1401 aaPredicted RBP15.05■□□□□ -0
CKS1B-206ENST00000474215 COL3A1P02461 1466 aaPredicted RBP15.04■□□□□ -0
CKS1B-206ENST00000474215 ATP6V1AP38606 617 aa15.04■□□□□ -0
CKS1B-206ENST00000474215 COL23A1Q86Y22 540 aaPredicted RBP15.04■□□□□ -0
CKS1B-206ENST00000474215 NFATC2IPQ8NCF5 419 aa15.04■□□□□ -0
CKS1B-206ENST00000474215 FLAD1Q8NFF5 587 aa15.04■□□□□ -0
CKS1B-206ENST00000474215 ARXQ96QS3 562 aa15.04■□□□□ -0
CKS1B-206ENST00000474215 MTHFSDQ2M296 383 aaKnown RBP15.03■□□□□ -0
CKS1B-206ENST00000474215 AK7Q96M32 723 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms