RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 SBF2Q86WG5 1849 aa19.27■□□□□ 0.68
VAMP4-203ENST00000474047 CAMKK2Q96RR4 588 aa19.27■□□□□ 0.68
VAMP4-203ENST00000474047 MTHFSP49914 203 aa19.25■□□□□ 0.67
VAMP4-203ENST00000474047 PARD3Q8TEW0 1356 aa19.25■□□□□ 0.67
VAMP4-203ENST00000474047 NPC1L1Q9UHC9 1359 aa19.25■□□□□ 0.67
VAMP4-203ENST00000474047 KCNQ2O43526 872 aa19.25■□□□□ 0.67
VAMP4-203ENST00000474047 PTF1AQ7RTS3 328 aa19.25■□□□□ 0.67
VAMP4-203ENST00000474047 SYTL4Q96C24 671 aaPredicted RBP19.24■□□□□ 0.67
VAMP4-203ENST00000474047 SPG7Q9UQ90 795 aa19.24■□□□□ 0.67
VAMP4-203ENST00000474047 PCDH11XQ9BZA7 1347 aa19.23■□□□□ 0.67
VAMP4-203ENST00000474047 PCDH11YQ9BZA8 1340 aa19.23■□□□□ 0.67
VAMP4-203ENST00000474047 PLSCR1O15162 318 aa19.22■□□□□ 0.67
VAMP4-203ENST00000474047 NBPF14Q5TI25 921 aa19.21■□□□□ 0.67
VAMP4-203ENST00000474047 IGSF1Q8N6C5 1336 aa19.2■□□□□ 0.66
VAMP4-203ENST00000474047 PRIM1P49642 420 aaKnown RBP19.2■□□□□ 0.66
VAMP4-203ENST00000474047 PSDA5PKW4 1024 aaPredicted RBP19.19■□□□□ 0.66
VAMP4-203ENST00000474047 NCAPD2Q15021 1401 aa19.19■□□□□ 0.66
VAMP4-203ENST00000474047 IL13P35225 146 aa19.18■□□□□ 0.66
VAMP4-203ENST00000474047 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.18■□□□□ 0.66
VAMP4-203ENST00000474047 NHSQ6T4R5 1651 aa19.18■□□□□ 0.66
VAMP4-203ENST00000474047 DIAPH1O60610 1272 aaKnown RBP19.17■□□□□ 0.66
VAMP4-203ENST00000474047 SULT6B1Q6IMI4 303 aa19.17■□□□□ 0.66
VAMP4-203ENST00000474047 R3HDM1Q15032 1099 aaKnown RBP19.17■□□□□ 0.66
VAMP4-203ENST00000474047 CFAP53Q96M91 514 aa19.17■□□□□ 0.66
VAMP4-203ENST00000474047 SHANK3Q9BYB0 1731 aa19.16■□□□□ 0.66
VAMP4-203ENST00000474047 CYP27B1O15528 508 aa19.16■□□□□ 0.66
VAMP4-203ENST00000474047 PLEKHO1Q53GL0 409 aaPredicted RBP19.16■□□□□ 0.66
VAMP4-203ENST00000474047 DDX10Q13206 875 aaKnown RBP19.15■□□□□ 0.66
VAMP4-203ENST00000474047 TXNRD1Q16881 649 aa19.15■□□□□ 0.66
VAMP4-203ENST00000474047 AEBP1Q8IUX7 1158 aa19.14■□□□□ 0.66
VAMP4-203ENST00000474047 IFNL2Q8IZJ0 200 aa19.14■□□□□ 0.66
VAMP4-203ENST00000474047 AMOTQ4VCS5 1084 aa19.14■□□□□ 0.65
VAMP4-203ENST00000474047 BTAF1O14981 1849 aa19.13■□□□□ 0.65
VAMP4-203ENST00000474047 RGPD3A6NKT7 1758 aaPredicted RBP19.13■□□□□ 0.65
VAMP4-203ENST00000474047 RGPD4Q7Z3J3 1758 aa19.13■□□□□ 0.65
VAMP4-203ENST00000474047 RREB1Q92766 1687 aa19.13■□□□□ 0.65
VAMP4-203ENST00000474047 PKD1L3Q7Z443 1732 aa19.13■□□□□ 0.65
VAMP4-203ENST00000474047 DOT1LQ8TEK3 1739 aa19.13■□□□□ 0.65
VAMP4-203ENST00000474047 U2SURPO15042 1029 aaKnown RBP19.12■□□□□ 0.65
VAMP4-203ENST00000474047 MPRIPQ6WCQ1 1025 aa19.12■□□□□ 0.65
VAMP4-203ENST00000474047 PROM2Q8N271 834 aa19.12■□□□□ 0.65
VAMP4-203ENST00000474047 HMOX1P09601 288 aa19.11■□□□□ 0.65
VAMP4-203ENST00000474047 PHKG2P15735 406 aa19.11■□□□□ 0.65
VAMP4-203ENST00000474047 PPP2R1AP30153 589 aa19.11■□□□□ 0.65
VAMP4-203ENST00000474047 NUP188Q5SRE5 1749 aa19.11■□□□□ 0.65
VAMP4-203ENST00000474047 ZNF530Q6P9A1 599 aaPredicted RBP19.11■□□□□ 0.65
VAMP4-203ENST00000474047 PLEKHG2Q9H7P9 1386 aa19.1■□□□□ 0.65
VAMP4-203ENST00000474047 NKX1-1Q15270 411 aaPredicted RBP19.1■□□□□ 0.65
VAMP4-203ENST00000474047 C1orf141Q5JVX7 400 aa19.1■□□□□ 0.65
VAMP4-203ENST00000474047 HSP90AB1P08238 724 aaKnown RBP19.09■□□□□ 0.65
VAMP4-203ENST00000474047 STK32BQ9NY57 414 aa19.09■□□□□ 0.65
VAMP4-203ENST00000474047 NUDCQ9Y266 331 aa19.09■□□□□ 0.65
VAMP4-203ENST00000474047 KDRP35968 1356 aa19.07■□□□□ 0.64
VAMP4-203ENST00000474047 SLC27A3Q5K4L6 730 aa19.07■□□□□ 0.64
VAMP4-203ENST00000474047 TMOD3Q9NYL9 352 aa19.07■□□□□ 0.64
VAMP4-203ENST00000474047 DCAF5Q96JK2 942 aa19.05■□□□□ 0.64
VAMP4-203ENST00000474047 SMARCC1Q92922 1105 aaPredicted RBP19.05■□□□□ 0.64
VAMP4-203ENST00000474047 PIGBQ92521 554 aa19.04■□□□□ 0.64
VAMP4-203ENST00000474047 ANO8Q9HCE9 1232 aaPredicted RBP19.04■□□□□ 0.64
VAMP4-203ENST00000474047 CCNL1Q9UK58 526 aaPredicted RBP19.04■□□□□ 0.64
VAMP4-203ENST00000474047 KCNQ4P56696 695 aa19.03■□□□□ 0.64
VAMP4-203ENST00000474047 SLC15A2Q16348 729 aa19.03■□□□□ 0.64
VAMP4-203ENST00000474047 ITGB4P16144 1822 aa19.03■□□□□ 0.64
VAMP4-203ENST00000474047 COL3A1P02461 1466 aaPredicted RBP19.03■□□□□ 0.64
VAMP4-203ENST00000474047 ERVV-2B6SEH9 535 aa19.03■□□□□ 0.64
VAMP4-203ENST00000474047 CABP4P57796 275 aa19.03■□□□□ 0.64
VAMP4-203ENST00000474047 RALBP1Q15311 655 aa19.03■□□□□ 0.64
VAMP4-203ENST00000474047 LRRC4BQ9NT99 713 aa19.03■□□□□ 0.64
VAMP4-203ENST00000474047 U2AF1L5P0DN76 240 aaPredicted RBP19.02■□□□□ 0.63
VAMP4-203ENST00000474047 HMGB2P26583 209 aaKnown RBP19.02■□□□□ 0.63
VAMP4-203ENST00000474047 U2AF1Q01081 240 aaKnown RBP eCLIP19.02■□□□□ 0.63
VAMP4-203ENST00000474047 PALLDQ8WX93 1383 aa19.01■□□□□ 0.63
VAMP4-203ENST00000474047 AKAP4Q5JQC9 854 aa19.01■□□□□ 0.63
VAMP4-203ENST00000474047 TOGARAM1Q9Y4F4 1720 aa19.01■□□□□ 0.63
VAMP4-203ENST00000474047 MTHFSDQ2M296 383 aaKnown RBP18.99■□□□□ 0.63
VAMP4-203ENST00000474047 TFCP2L1Q9NZI6 479 aa18.98■□□□□ 0.63
VAMP4-203ENST00000474047 LY75O60449 1722 aa18.97■□□□□ 0.63
VAMP4-203ENST00000474047 PRKAR2BP31323 418 aa18.97■□□□□ 0.63
VAMP4-203ENST00000474047 ASAP1Q9ULH1 1129 aa18.97■□□□□ 0.63
VAMP4-203ENST00000474047 ZNF316A6NFI3 1004 aaPredicted RBP18.97■□□□□ 0.63
VAMP4-203ENST00000474047 GAS2L2Q8NHY3 880 aa18.97■□□□□ 0.63
VAMP4-203ENST00000474047 KDM6AO15550 1401 aaPredicted RBP18.96■□□□□ 0.63
VAMP4-203ENST00000474047 NEFMP07197 916 aa18.96■□□□□ 0.63
VAMP4-203ENST00000474047 ZNF827Q17R98 1081 aa18.96■□□□□ 0.63
VAMP4-203ENST00000474047 NFATC2IPQ8NCF5 419 aa18.96■□□□□ 0.63
VAMP4-203ENST00000474047 SPON1Q9HCB6 807 aa18.96■□□□□ 0.63
VAMP4-203ENST00000474047 FCHSD2O94868 740 aa18.95■□□□□ 0.62
VAMP4-203ENST00000474047 ATG3Q9NT62 314 aa18.95■□□□□ 0.62
VAMP4-203ENST00000474047 LOC102724428A0A0B4J2F2 783 aa18.94■□□□□ 0.62
VAMP4-203ENST00000474047 SIK1P57059 783 aa18.94■□□□□ 0.62
VAMP4-203ENST00000474047 AKT1S1Q96B36 256 aa18.94■□□□□ 0.62
VAMP4-203ENST00000474047 RBM42Q9BTD8 480 aaKnown RBP18.94■□□□□ 0.62
VAMP4-203ENST00000474047 RSPH6AQ9H0K4 717 aa18.94■□□□□ 0.62
VAMP4-203ENST00000474047 LGR6Q9HBX8 967 aa18.94■□□□□ 0.62
VAMP4-203ENST00000474047 MYBBP1AQ9BQG0 1328 aaKnown RBP18.93■□□□□ 0.62
VAMP4-203ENST00000474047 RNMTO43148 476 aaKnown RBP18.93■□□□□ 0.62
VAMP4-203ENST00000474047 MSH5O43196 834 aa18.93■□□□□ 0.62
VAMP4-203ENST00000474047 ZBTB7AO95365 584 aa18.93■□□□□ 0.62
VAMP4-203ENST00000474047 ATP6V1AP38606 617 aa18.93■□□□□ 0.62
VAMP4-203ENST00000474047 PDGFDQ9GZP0 370 aaPredicted RBP18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 133.2 ms