RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 TRIM37O94972 964 aa19.53■□□□□ 0.72
SQSTM1-205ENST00000464493 SULT6B1Q6IMI4 303 aa19.52■□□□□ 0.72
SQSTM1-205ENST00000464493 BCL9O00512 1426 aa19.51■□□□□ 0.71
SQSTM1-205ENST00000464493 RGPD1P0DJD0 1748 aa19.51■□□□□ 0.71
SQSTM1-205ENST00000464493 AEBP1Q8IUX7 1158 aa19.51■□□□□ 0.71
SQSTM1-205ENST00000464493 COL3A1P02461 1466 aaPredicted RBP19.51■□□□□ 0.71
SQSTM1-205ENST00000464493 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.5■□□□□ 0.71
SQSTM1-205ENST00000464493 SPG7Q9UQ90 795 aa19.5■□□□□ 0.71
SQSTM1-205ENST00000464493 KDRP35968 1356 aa19.49■□□□□ 0.71
SQSTM1-205ENST00000464493 SHANK3Q9BYB0 1731 aa19.49■□□□□ 0.71
SQSTM1-205ENST00000464493 U2SURPO15042 1029 aaKnown RBP19.49■□□□□ 0.71
SQSTM1-205ENST00000464493 PCDH11XQ9BZA7 1347 aa19.49■□□□□ 0.71
SQSTM1-205ENST00000464493 PCDH11YQ9BZA8 1340 aa19.49■□□□□ 0.71
SQSTM1-205ENST00000464493 SBF2Q86WG5 1849 aa19.48■□□□□ 0.71
SQSTM1-205ENST00000464493 HMOX1P09601 288 aa19.48■□□□□ 0.71
SQSTM1-205ENST00000464493 NUDCQ9Y266 331 aa19.48■□□□□ 0.71
SQSTM1-205ENST00000464493 PLEKHG2Q9H7P9 1386 aa19.47■□□□□ 0.71
SQSTM1-205ENST00000464493 BCL11BQ9C0K0 894 aaPredicted RBP19.47■□□□□ 0.71
SQSTM1-205ENST00000464493 PRKRIP1Q9H875 184 aaPredicted RBP19.47■□□□□ 0.71
SQSTM1-205ENST00000464493 KAT6BQ8WYB5 2073 aa19.47■□□□□ 0.71
SQSTM1-205ENST00000464493 PKD1L3Q7Z443 1732 aa19.46■□□□□ 0.71
SQSTM1-205ENST00000464493 CYP27B1O15528 508 aa19.46■□□□□ 0.71
SQSTM1-205ENST00000464493 APBA3O96018 575 aa19.46■□□□□ 0.71
SQSTM1-205ENST00000464493 BAG6P46379 1132 aa19.46■□□□□ 0.71
SQSTM1-205ENST00000464493 PLEKHO1Q53GL0 409 aaPredicted RBP19.46■□□□□ 0.71
SQSTM1-205ENST00000464493 DEFB132Q7Z7B7 95 aa19.46■□□□□ 0.71
SQSTM1-205ENST00000464493 ACSBG1Q96GR2 724 aa19.46■□□□□ 0.71
SQSTM1-205ENST00000464493 MYBBP1AQ9BQG0 1328 aaKnown RBP19.46■□□□□ 0.71
SQSTM1-205ENST00000464493 AMOTQ4VCS5 1084 aa19.45■□□□□ 0.7
SQSTM1-205ENST00000464493 TNS1Q9HBL0 1735 aaKnown RBP19.45■□□□□ 0.7
SQSTM1-205ENST00000464493 KCNQ2O43526 872 aa19.44■□□□□ 0.7
SQSTM1-205ENST00000464493 PTF1AQ7RTS3 328 aa19.44■□□□□ 0.7
SQSTM1-205ENST00000464493 EN1Q05925 392 aaPredicted RBP19.43■□□□□ 0.7
SQSTM1-205ENST00000464493 IFNL2Q8IZJ0 200 aa19.43■□□□□ 0.7
SQSTM1-205ENST00000464493 U2AF1L5P0DN76 240 aaPredicted RBP19.42■□□□□ 0.7
SQSTM1-205ENST00000464493 U2AF1Q01081 240 aaKnown RBP eCLIP19.42■□□□□ 0.73e-6■□□□□ 8.7
SQSTM1-205ENST00000464493 NKX1-1Q15270 411 aaPredicted RBP19.42■□□□□ 0.7
SQSTM1-205ENST00000464493 PHKG2P15735 406 aa19.41■□□□□ 0.7
SQSTM1-205ENST00000464493 PRIM1P49642 420 aaKnown RBP19.41■□□□□ 0.7
SQSTM1-205ENST00000464493 NHSQ6T4R5 1651 aa19.4■□□□□ 0.7
SQSTM1-205ENST00000464493 ZNF530Q6P9A1 599 aaPredicted RBP19.4■□□□□ 0.7
SQSTM1-205ENST00000464493 SYTL4Q96C24 671 aaPredicted RBP19.4■□□□□ 0.7
SQSTM1-205ENST00000464493 PLSCR1O15162 318 aa19.39■□□□□ 0.69
SQSTM1-205ENST00000464493 CAMKK2Q96RR4 588 aa19.39■□□□□ 0.69
SQSTM1-205ENST00000464493 HSP90AB1P08238 724 aaKnown RBP19.38■□□□□ 0.69
SQSTM1-205ENST00000464493 EZH2Q15910 746 aaKnown RBP19.38■□□□□ 0.69
SQSTM1-205ENST00000464493 C1orf141Q5JVX7 400 aa19.38■□□□□ 0.69
SQSTM1-205ENST00000464493 DOT1LQ8TEK3 1739 aa19.38■□□□□ 0.69
SQSTM1-205ENST00000464493 RSPH6AQ9H0K4 717 aa19.38■□□□□ 0.69
SQSTM1-205ENST00000464493 ANP32CO43423 234 aa19.37■□□□□ 0.69
SQSTM1-205ENST00000464493 FCHSD2O94868 740 aa19.37■□□□□ 0.69
SQSTM1-205ENST00000464493 PRKAR2BP31323 418 aa19.36■□□□□ 0.69
SQSTM1-205ENST00000464493 MTHFSDQ2M296 383 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-205ENST00000464493 AKAP4Q5JQC9 854 aa19.35■□□□□ 0.69
SQSTM1-205ENST00000464493 DCAF5Q96JK2 942 aa19.35■□□□□ 0.69
SQSTM1-205ENST00000464493 BTAF1O14981 1849 aa19.35■□□□□ 0.69
SQSTM1-205ENST00000464493 MPRIPQ6WCQ1 1025 aa19.34■□□□□ 0.69
SQSTM1-205ENST00000464493 PHACTR3Q96KR7 559 aa19.33■□□□□ 0.68
SQSTM1-205ENST00000464493 TOGARAM1Q9Y4F4 1720 aa19.32■□□□□ 0.68
SQSTM1-205ENST00000464493 ERVV-2B6SEH9 535 aa19.32■□□□□ 0.68
SQSTM1-205ENST00000464493 GAS2L2Q8NHY3 880 aa19.32■□□□□ 0.68
SQSTM1-205ENST00000464493 ITGB4P16144 1822 aa19.32■□□□□ 0.68
SQSTM1-205ENST00000464493 RGPD3A6NKT7 1758 aaPredicted RBP19.32■□□□□ 0.68
SQSTM1-205ENST00000464493 RGPD4Q7Z3J3 1758 aa19.32■□□□□ 0.68
SQSTM1-205ENST00000464493 PROM2Q8N271 834 aa19.31■□□□□ 0.68
SQSTM1-205ENST00000464493 PIGBQ92521 554 aa19.31■□□□□ 0.68
SQSTM1-205ENST00000464493 PNNQ9H307 717 aaKnown RBP19.31■□□□□ 0.68
SQSTM1-205ENST00000464493 TXNRD1Q16881 649 aa19.3■□□□□ 0.68
SQSTM1-205ENST00000464493 TMOD3Q9NYL9 352 aa19.3■□□□□ 0.68
SQSTM1-205ENST00000464493 KDM6AO15550 1401 aaPredicted RBP19.29■□□□□ 0.68
SQSTM1-205ENST00000464493 NEFMP07197 916 aa19.29■□□□□ 0.68
SQSTM1-205ENST00000464493 CABP4P57796 275 aa19.28■□□□□ 0.68
SQSTM1-205ENST00000464493 WDR43Q15061 677 aaKnown RBP eCLIP19.28■□□□□ 0.68
SQSTM1-205ENST00000464493 PLEKHF1Q96S99 279 aa19.28■□□□□ 0.68
SQSTM1-205ENST00000464493 LGR6Q9HBX8 967 aa19.28■□□□□ 0.68
SQSTM1-205ENST00000464493 RREB1Q92766 1687 aa19.27■□□□□ 0.68
SQSTM1-205ENST00000464493 GNAT3A8MTJ3 354 aa19.27■□□□□ 0.68
SQSTM1-205ENST00000464493 RNMTO43148 476 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-205ENST00000464493 NFATC2IPQ8NCF5 419 aa19.26■□□□□ 0.67
SQSTM1-205ENST00000464493 SMARCC1Q92922 1105 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-205ENST00000464493 MAP3K5Q99683 1374 aa19.26■□□□□ 0.67
SQSTM1-205ENST00000464493 SCN11AQ9UI33 1791 aa19.26■□□□□ 0.67
SQSTM1-205ENST00000464493 NBPF14Q5TI25 921 aa19.25■□□□□ 0.67
SQSTM1-205ENST00000464493 ADAMTS8Q9UP79 889 aa19.25■□□□□ 0.67
SQSTM1-205ENST00000464493 CCDC184Q52MB2 194 aa19.24■□□□□ 0.67
SQSTM1-205ENST00000464493 SLC27A3Q5K4L6 730 aa19.24■□□□□ 0.67
SQSTM1-205ENST00000464493 ASAP1Q9ULH1 1129 aa19.24■□□□□ 0.67
SQSTM1-205ENST00000464493 NUP188Q5SRE5 1749 aa19.24■□□□□ 0.67
SQSTM1-205ENST00000464493 MAPK8IP3Q9UPT6 1336 aa19.24■□□□□ 0.67
SQSTM1-205ENST00000464493 VIRMAQ69YN4 1812 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-205ENST00000464493 PALLDQ8WX93 1383 aa19.23■□□□□ 0.67
SQSTM1-205ENST00000464493 IL17REQ8NFR9 667 aa19.23■□□□□ 0.67
SQSTM1-205ENST00000464493 SLC52A2Q9HAB3 445 aa19.23■□□□□ 0.67
SQSTM1-205ENST00000464493 LRRC4BQ9NT99 713 aa19.23■□□□□ 0.67
SQSTM1-205ENST00000464493 LY75O60449 1722 aa19.22■□□□□ 0.67
SQSTM1-205ENST00000464493 RTF1Q92541 710 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-205ENST00000464493 ATG3Q9NT62 314 aa19.22■□□□□ 0.67
SQSTM1-205ENST00000464493 CCNL1Q9UK58 526 aaPredicted RBP19.22■□□□□ 0.67
SQSTM1-205ENST00000464493 ADAMTS7Q9UKP4 1686 aa19.21■□□□□ 0.67
SQSTM1-205ENST00000464493 MRS2Q9HD23 443 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms