RNA–Protein interactions for RNA: ENST00000457373.5

RFX3-210, Transcript of regulatory factor X3, human

TSL 5

Gene RFX3, Length 822 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-210	ENST00000457373	NBPF6	Q5VWK0	638 aa		13.7	□□□□□ -0.22
RFX3-210	ENST00000457373	USHBP1	Q8N6Y0	703 aa		13.7	□□□□□ -0.22
RFX3-210	ENST00000457373	NBPF4	Q96M43	638 aa		13.7	□□□□□ -0.22
RFX3-210	ENST00000457373	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.7	□□□□□ -0.22
RFX3-210	ENST00000457373	IL2RB	P14784	551 aa		13.69	□□□□□ -0.22
RFX3-210	ENST00000457373	LRRC37A3	O60309	1634 aa		13.68	□□□□□ -0.22
RFX3-210	ENST00000457373	DISP2	A7MBM2	1401 aa		13.68	□□□□□ -0.22
RFX3-210	ENST00000457373	CAPN15	O75808	1086 aa		13.68	□□□□□ -0.22
RFX3-210	ENST00000457373	NPC1L1	Q9UHC9	1359 aa		13.68	□□□□□ -0.22
RFX3-210	ENST00000457373	VSIG10	Q8N0Z9	540 aa		13.67	□□□□□ -0.22
RFX3-210	ENST00000457373	MTHFS	P49914	203 aa		13.66	□□□□□ -0.22
RFX3-210	ENST00000457373	EIF4A2	Q14240	407 aa	Known RBP	13.66	□□□□□ -0.22
RFX3-210	ENST00000457373	FAM196A	Q6ZSG2	479 aa		13.66	□□□□□ -0.22
RFX3-210	ENST00000457373	EYA1	Q99502	592 aa		13.66	□□□□□ -0.22
RFX3-210	ENST00000457373	RNF39	Q9H2S5	420 aa		13.66	□□□□□ -0.22
RFX3-210	ENST00000457373	SF3B2	Q13435	895 aa	Known RBP	13.65	□□□□□ -0.22
RFX3-210	ENST00000457373	CCDC125	Q86Z20	511 aa		13.65	□□□□□ -0.22
RFX3-210	ENST00000457373	MARCH10	Q8NA82	808 aa	Predicted RBP	13.65	□□□□□ -0.22
RFX3-210	ENST00000457373	TAT	P17735	454 aa	Predicted RBP	13.64	□□□□□ -0.23
RFX3-210	ENST00000457373	RAPGEF4	Q8WZA2	1011 aa		13.64	□□□□□ -0.23
RFX3-210	ENST00000457373	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.63	□□□□□ -0.23
RFX3-210	ENST00000457373	TRIM37	O94972	964 aa		13.63	□□□□□ -0.23
RFX3-210	ENST00000457373	DDX54	Q8TDD1	881 aa	Known RBP	13.63	□□□□□ -0.23
RFX3-210	ENST00000457373	TNS2	Q63HR2	1409 aa		13.63	□□□□□ -0.23
RFX3-210	ENST00000457373	ZCRB1	Q8TBF4	217 aa	Known RBP	13.62	□□□□□ -0.23
RFX3-210	ENST00000457373	MEGF6	O75095	1541 aa		13.62	□□□□□ -0.23
RFX3-210	ENST00000457373	OVOS2	A0A0G2JMS6	1433 aa		13.62	□□□□□ -0.23
RFX3-210	ENST00000457373	RGPD1	P0DJD0	1748 aa		13.61	□□□□□ -0.23
RFX3-210	ENST00000457373	KAT6B	Q8WYB5	2073 aa		13.61	□□□□□ -0.23
RFX3-210	ENST00000457373	DEFB132	Q7Z7B7	95 aa		13.61	□□□□□ -0.23
RFX3-210	ENST00000457373	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.61	□□□□□ -0.23
RFX3-210	ENST00000457373	SBF2	Q86WG5	1849 aa		13.61	□□□□□ -0.23
RFX3-210	ENST00000457373	PPP2R1A	P30153	589 aa		13.6	□□□□□ -0.23
RFX3-210	ENST00000457373	IL13	P35225	146 aa		13.6	□□□□□ -0.23
RFX3-210	ENST00000457373	SPOCK2	Q92563	424 aa		13.6	□□□□□ -0.23
RFX3-210	ENST00000457373	DIAPH1	O60610	1272 aa	Known RBP	13.59	□□□□□ -0.23
RFX3-210	ENST00000457373	BAG6	P46379	1132 aa		13.59	□□□□□ -0.23
RFX3-210	ENST00000457373	ACSBG1	Q96GR2	724 aa		13.59	□□□□□ -0.23
RFX3-210	ENST00000457373	IGSF1	Q8N6C5	1336 aa		13.59	□□□□□ -0.23
RFX3-210	ENST00000457373	SHANK3	Q9BYB0	1731 aa		13.59	□□□□□ -0.23
RFX3-210	ENST00000457373	APBA3	O96018	575 aa		13.58	□□□□□ -0.24
RFX3-210	ENST00000457373	PRKCSH	P14314	528 aa	Predicted RBP	13.58	□□□□□ -0.24
RFX3-210	ENST00000457373	SULT6B1	Q6IMI4	303 aa		13.58	□□□□□ -0.24
RFX3-210	ENST00000457373	TNS1	Q9HBL0	1735 aa	Known RBP	13.58	□□□□□ -0.24
RFX3-210	ENST00000457373	NCAPD2	Q15021	1401 aa		13.57	□□□□□ -0.24
RFX3-210	ENST00000457373	EN1	Q05925	392 aa	Predicted RBP	13.57	□□□□□ -0.24
RFX3-210	ENST00000457373	AEBP1	Q8IUX7	1158 aa		13.57	□□□□□ -0.24
RFX3-210	ENST00000457373	BBX	Q8WY36	941 aa	Predicted RBP	13.57	□□□□□ -0.24
RFX3-210	ENST00000457373	CFAP53	Q96M91	514 aa		13.57	□□□□□ -0.24
RFX3-210	ENST00000457373	U2SURP	O15042	1029 aa	Known RBP	13.56	□□□□□ -0.24
RFX3-210	ENST00000457373	HMOX1	P09601	288 aa		13.56	□□□□□ -0.24
RFX3-210	ENST00000457373	PTF1A	Q7RTS3	328 aa		13.56	□□□□□ -0.24
RFX3-210	ENST00000457373	SPG7	Q9UQ90	795 aa		13.56	□□□□□ -0.24
RFX3-210	ENST00000457373	PARD3	Q8TEW0	1356 aa		13.56	□□□□□ -0.24
RFX3-210	ENST00000457373	KCNQ2	O43526	872 aa		13.55	□□□□□ -0.24
RFX3-210	ENST00000457373	ABCB7	O75027	752 aa		13.55	□□□□□ -0.24
RFX3-210	ENST00000457373	ECM2	O94769	699 aa	Predicted RBP	13.55	□□□□□ -0.24
RFX3-210	ENST00000457373	EZH2	Q15910	746 aa	Known RBP	13.55	□□□□□ -0.24
RFX3-210	ENST00000457373	KLHL34	Q8N239	644 aa		13.55	□□□□□ -0.24
RFX3-210	ENST00000457373	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.55	□□□□□ -0.24
RFX3-210	ENST00000457373	PCDH11X	Q9BZA7	1347 aa		13.55	□□□□□ -0.24
RFX3-210	ENST00000457373	PCDH11Y	Q9BZA8	1340 aa		13.55	□□□□□ -0.24
RFX3-210	ENST00000457373	PKD1L3	Q7Z443	1732 aa		13.55	□□□□□ -0.24
RFX3-210	ENST00000457373	CYP27B1	O15528	508 aa		13.54	□□□□□ -0.24
RFX3-210	ENST00000457373	RALBP1	Q15311	655 aa		13.54	□□□□□ -0.24
RFX3-210	ENST00000457373	SYTL4	Q96C24	671 aa	Predicted RBP	13.54	□□□□□ -0.24
RFX3-210	ENST00000457373	BCL9	O00512	1426 aa		13.54	□□□□□ -0.24
RFX3-210	ENST00000457373	COL3A1	P02461	1466 aa	Predicted RBP	13.54	□□□□□ -0.24
RFX3-210	ENST00000457373	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.53	□□□□□ -0.24
RFX3-210	ENST00000457373	TAOK2	Q9UL54	1235 aa		13.53	□□□□□ -0.24
RFX3-210	ENST00000457373	NHS	Q6T4R5	1651 aa		13.53	□□□□□ -0.24
RFX3-210	ENST00000457373	DOT1L	Q8TEK3	1739 aa		13.53	□□□□□ -0.24
RFX3-210	ENST00000457373	PRIM1	P49642	420 aa	Known RBP	13.52	□□□□□ -0.25
RFX3-210	ENST00000457373	IFNL2	Q8IZJ0	200 aa		13.52	□□□□□ -0.25
RFX3-210	ENST00000457373	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.52	□□□□□ -0.25	4e-6	■□□□□ 11.2
RFX3-210	ENST00000457373	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.52	□□□□□ -0.25
RFX3-210	ENST00000457373	NUDC	Q9Y266	331 aa		13.52	□□□□□ -0.25
RFX3-210	ENST00000457373	PHKG2	P15735	406 aa		13.51	□□□□□ -0.25
RFX3-210	ENST00000457373	AMOT	Q4VCS5	1084 aa		13.51	□□□□□ -0.25
RFX3-210	ENST00000457373	CAMKK2	Q96RR4	588 aa		13.51	□□□□□ -0.25
RFX3-210	ENST00000457373	BTAF1	O14981	1849 aa		13.5	□□□□□ -0.25
RFX3-210	ENST00000457373	KDR	P35968	1356 aa		13.5	□□□□□ -0.25
RFX3-210	ENST00000457373	C1QBP	Q07021	282 aa	Known RBP	13.5	□□□□□ -0.25
RFX3-210	ENST00000457373	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.5	□□□□□ -0.25
RFX3-210	ENST00000457373	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.49	□□□□□ -0.25
RFX3-210	ENST00000457373	PLSCR1	O15162	318 aa		13.49	□□□□□ -0.25
RFX3-210	ENST00000457373	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.49	□□□□□ -0.25
RFX3-210	ENST00000457373	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.49	□□□□□ -0.25
RFX3-210	ENST00000457373	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.49	□□□□□ -0.25
RFX3-210	ENST00000457373	ITGB4	P16144	1822 aa		13.48	□□□□□ -0.25
RFX3-210	ENST00000457373	NKX1-1	Q15270	411 aa	Predicted RBP	13.48	□□□□□ -0.25
RFX3-210	ENST00000457373	C1orf141	Q5JVX7	400 aa		13.48	□□□□□ -0.25
RFX3-210	ENST00000457373	MPRIP	Q6WCQ1	1025 aa		13.48	□□□□□ -0.25
RFX3-210	ENST00000457373	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.47	□□□□□ -0.25
RFX3-210	ENST00000457373	TOGARAM1	Q9Y4F4	1720 aa		13.47	□□□□□ -0.25
RFX3-210	ENST00000457373	PLEKHG2	Q9H7P9	1386 aa		13.46	□□□□□ -0.25
RFX3-210	ENST00000457373	PRKAR2B	P31323	418 aa		13.46	□□□□□ -0.25
RFX3-210	ENST00000457373	MTHFSD	Q2M296	383 aa	Known RBP	13.46	□□□□□ -0.25
RFX3-210	ENST00000457373	RREB1	Q92766	1687 aa		13.46	□□□□□ -0.26
RFX3-210	ENST00000457373	RGL2	O15211	777 aa		13.45	□□□□□ -0.26

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