RNA–Protein interactions for RNA: ENST00000457373.5

RFX3-210, Transcript of regulatory factor X3, humanhuman

TSL 5

Gene RFX3, Length 822 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-210ENST00000457373 NBPF6Q5VWK0 638 aa13.7□□□□□ -0.22
RFX3-210ENST00000457373 USHBP1Q8N6Y0 703 aa13.7□□□□□ -0.22
RFX3-210ENST00000457373 NBPF4Q96M43 638 aa13.7□□□□□ -0.22
RFX3-210ENST00000457373 CDCA7Q9BWT1 371 aaPredicted RBP13.7□□□□□ -0.22
RFX3-210ENST00000457373 IL2RBP14784 551 aa13.69□□□□□ -0.22
RFX3-210ENST00000457373 LRRC37A3O60309 1634 aa13.68□□□□□ -0.22
RFX3-210ENST00000457373 DISP2A7MBM2 1401 aa13.68□□□□□ -0.22
RFX3-210ENST00000457373 CAPN15O75808 1086 aa13.68□□□□□ -0.22
RFX3-210ENST00000457373 NPC1L1Q9UHC9 1359 aa13.68□□□□□ -0.22
RFX3-210ENST00000457373 VSIG10Q8N0Z9 540 aa13.67□□□□□ -0.22
RFX3-210ENST00000457373 MTHFSP49914 203 aa13.66□□□□□ -0.22
RFX3-210ENST00000457373 EIF4A2Q14240 407 aaKnown RBP13.66□□□□□ -0.22
RFX3-210ENST00000457373 FAM196AQ6ZSG2 479 aa13.66□□□□□ -0.22
RFX3-210ENST00000457373 EYA1Q99502 592 aa13.66□□□□□ -0.22
RFX3-210ENST00000457373 RNF39Q9H2S5 420 aa13.66□□□□□ -0.22
RFX3-210ENST00000457373 SF3B2Q13435 895 aaKnown RBP13.65□□□□□ -0.22
RFX3-210ENST00000457373 CCDC125Q86Z20 511 aa13.65□□□□□ -0.22
RFX3-210ENST00000457373 MARCH10Q8NA82 808 aaPredicted RBP13.65□□□□□ -0.22
RFX3-210ENST00000457373 TATP17735 454 aaPredicted RBP13.64□□□□□ -0.23
RFX3-210ENST00000457373 RAPGEF4Q8WZA2 1011 aa13.64□□□□□ -0.23
RFX3-210ENST00000457373 ZNF316A6NFI3 1004 aaPredicted RBP13.63□□□□□ -0.23
RFX3-210ENST00000457373 TRIM37O94972 964 aa13.63□□□□□ -0.23
RFX3-210ENST00000457373 DDX54Q8TDD1 881 aaKnown RBP13.63□□□□□ -0.23
RFX3-210ENST00000457373 TNS2Q63HR2 1409 aa13.63□□□□□ -0.23
RFX3-210ENST00000457373 ZCRB1Q8TBF4 217 aaKnown RBP13.62□□□□□ -0.23
RFX3-210ENST00000457373 MEGF6O75095 1541 aa13.62□□□□□ -0.23
RFX3-210ENST00000457373 OVOS2A0A0G2JMS6 1433 aa13.62□□□□□ -0.23
RFX3-210ENST00000457373 RGPD1P0DJD0 1748 aa13.61□□□□□ -0.23
RFX3-210ENST00000457373 KAT6BQ8WYB5 2073 aa13.61□□□□□ -0.23
RFX3-210ENST00000457373 DEFB132Q7Z7B7 95 aa13.61□□□□□ -0.23
RFX3-210ENST00000457373 ZBTB12Q9Y330 459 aaPredicted RBP13.61□□□□□ -0.23
RFX3-210ENST00000457373 SBF2Q86WG5 1849 aa13.61□□□□□ -0.23
RFX3-210ENST00000457373 PPP2R1AP30153 589 aa13.6□□□□□ -0.23
RFX3-210ENST00000457373 IL13P35225 146 aa13.6□□□□□ -0.23
RFX3-210ENST00000457373 SPOCK2Q92563 424 aa13.6□□□□□ -0.23
RFX3-210ENST00000457373 DIAPH1O60610 1272 aaKnown RBP13.59□□□□□ -0.23
RFX3-210ENST00000457373 BAG6P46379 1132 aa13.59□□□□□ -0.23
RFX3-210ENST00000457373 ACSBG1Q96GR2 724 aa13.59□□□□□ -0.23
RFX3-210ENST00000457373 IGSF1Q8N6C5 1336 aa13.59□□□□□ -0.23
RFX3-210ENST00000457373 SHANK3Q9BYB0 1731 aa13.59□□□□□ -0.23
RFX3-210ENST00000457373 APBA3O96018 575 aa13.58□□□□□ -0.24
RFX3-210ENST00000457373 PRKCSHP14314 528 aaPredicted RBP13.58□□□□□ -0.24
RFX3-210ENST00000457373 SULT6B1Q6IMI4 303 aa13.58□□□□□ -0.24
RFX3-210ENST00000457373 TNS1Q9HBL0 1735 aaKnown RBP13.58□□□□□ -0.24
RFX3-210ENST00000457373 NCAPD2Q15021 1401 aa13.57□□□□□ -0.24
RFX3-210ENST00000457373 EN1Q05925 392 aaPredicted RBP13.57□□□□□ -0.24
RFX3-210ENST00000457373 AEBP1Q8IUX7 1158 aa13.57□□□□□ -0.24
RFX3-210ENST00000457373 BBXQ8WY36 941 aaPredicted RBP13.57□□□□□ -0.24
RFX3-210ENST00000457373 CFAP53Q96M91 514 aa13.57□□□□□ -0.24
RFX3-210ENST00000457373 U2SURPO15042 1029 aaKnown RBP13.56□□□□□ -0.24
RFX3-210ENST00000457373 HMOX1P09601 288 aa13.56□□□□□ -0.24
RFX3-210ENST00000457373 PTF1AQ7RTS3 328 aa13.56□□□□□ -0.24
RFX3-210ENST00000457373 SPG7Q9UQ90 795 aa13.56□□□□□ -0.24
RFX3-210ENST00000457373 PARD3Q8TEW0 1356 aa13.56□□□□□ -0.24
RFX3-210ENST00000457373 KCNQ2O43526 872 aa13.55□□□□□ -0.24
RFX3-210ENST00000457373 ABCB7O75027 752 aa13.55□□□□□ -0.24
RFX3-210ENST00000457373 ECM2O94769 699 aaPredicted RBP13.55□□□□□ -0.24
RFX3-210ENST00000457373 EZH2Q15910 746 aaKnown RBP13.55□□□□□ -0.24
RFX3-210ENST00000457373 KLHL34Q8N239 644 aa13.55□□□□□ -0.24
RFX3-210ENST00000457373 BCL11BQ9C0K0 894 aaPredicted RBP13.55□□□□□ -0.24
RFX3-210ENST00000457373 PCDH11XQ9BZA7 1347 aa13.55□□□□□ -0.24
RFX3-210ENST00000457373 PCDH11YQ9BZA8 1340 aa13.55□□□□□ -0.24
RFX3-210ENST00000457373 PKD1L3Q7Z443 1732 aa13.55□□□□□ -0.24
RFX3-210ENST00000457373 CYP27B1O15528 508 aa13.54□□□□□ -0.24
RFX3-210ENST00000457373 RALBP1Q15311 655 aa13.54□□□□□ -0.24
RFX3-210ENST00000457373 SYTL4Q96C24 671 aaPredicted RBP13.54□□□□□ -0.24
RFX3-210ENST00000457373 BCL9O00512 1426 aa13.54□□□□□ -0.24
RFX3-210ENST00000457373 COL3A1P02461 1466 aaPredicted RBP13.54□□□□□ -0.24
RFX3-210ENST00000457373 PLEKHO1Q53GL0 409 aaPredicted RBP13.53□□□□□ -0.24
RFX3-210ENST00000457373 TAOK2Q9UL54 1235 aa13.53□□□□□ -0.24
RFX3-210ENST00000457373 NHSQ6T4R5 1651 aa13.53□□□□□ -0.24
RFX3-210ENST00000457373 DOT1LQ8TEK3 1739 aa13.53□□□□□ -0.24
RFX3-210ENST00000457373 PRIM1P49642 420 aaKnown RBP13.52□□□□□ -0.25
RFX3-210ENST00000457373 IFNL2Q8IZJ0 200 aa13.52□□□□□ -0.25
RFX3-210ENST00000457373 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.52□□□□□ -0.254e-6■□□□□ 11.2
RFX3-210ENST00000457373 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.52□□□□□ -0.25
RFX3-210ENST00000457373 NUDCQ9Y266 331 aa13.52□□□□□ -0.25
RFX3-210ENST00000457373 PHKG2P15735 406 aa13.51□□□□□ -0.25
RFX3-210ENST00000457373 AMOTQ4VCS5 1084 aa13.51□□□□□ -0.25
RFX3-210ENST00000457373 CAMKK2Q96RR4 588 aa13.51□□□□□ -0.25
RFX3-210ENST00000457373 BTAF1O14981 1849 aa13.5□□□□□ -0.25
RFX3-210ENST00000457373 KDRP35968 1356 aa13.5□□□□□ -0.25
RFX3-210ENST00000457373 C1QBPQ07021 282 aaKnown RBP13.5□□□□□ -0.25
RFX3-210ENST00000457373 ZNF530Q6P9A1 599 aaPredicted RBP13.5□□□□□ -0.25
RFX3-210ENST00000457373 MYBBP1AQ9BQG0 1328 aaKnown RBP13.49□□□□□ -0.25
RFX3-210ENST00000457373 PLSCR1O15162 318 aa13.49□□□□□ -0.25
RFX3-210ENST00000457373 U2AF1L5P0DN76 240 aaPredicted RBP13.49□□□□□ -0.25
RFX3-210ENST00000457373 U2AF1Q01081 240 aaKnown RBP eCLIP13.49□□□□□ -0.25
RFX3-210ENST00000457373 PRKRIP1Q9H875 184 aaPredicted RBP13.49□□□□□ -0.25
RFX3-210ENST00000457373 ITGB4P16144 1822 aa13.48□□□□□ -0.25
RFX3-210ENST00000457373 NKX1-1Q15270 411 aaPredicted RBP13.48□□□□□ -0.25
RFX3-210ENST00000457373 C1orf141Q5JVX7 400 aa13.48□□□□□ -0.25
RFX3-210ENST00000457373 MPRIPQ6WCQ1 1025 aa13.48□□□□□ -0.25
RFX3-210ENST00000457373 PAXIP1Q6ZW49 1069 aaPredicted RBP13.47□□□□□ -0.25
RFX3-210ENST00000457373 TOGARAM1Q9Y4F4 1720 aa13.47□□□□□ -0.25
RFX3-210ENST00000457373 PLEKHG2Q9H7P9 1386 aa13.46□□□□□ -0.25
RFX3-210ENST00000457373 PRKAR2BP31323 418 aa13.46□□□□□ -0.25
RFX3-210ENST00000457373 MTHFSDQ2M296 383 aaKnown RBP13.46□□□□□ -0.25
RFX3-210ENST00000457373 RREB1Q92766 1687 aa13.46□□□□□ -0.26
RFX3-210ENST00000457373 RGL2O15211 777 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms