RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 WASHC2AQ641Q2 1341 aa26.74■■□□□ 1.87
USP40-207ENST00000450940 DDX54Q8TDD1 881 aaKnown RBP26.74■■□□□ 1.87
USP40-207ENST00000450940 TXNRD1Q16881 649 aa26.73■■□□□ 1.87
USP40-207ENST00000450940 POLKQ9UBT6 870 aa26.72■■□□□ 1.87
USP40-207ENST00000450940 NCAPD2Q15021 1401 aa26.72■■□□□ 1.87
USP40-207ENST00000450940 USHBP1Q8N6Y0 703 aa26.71■■□□□ 1.87
USP40-207ENST00000450940 RAPGEF4Q8WZA2 1011 aa26.7■■□□□ 1.86
USP40-207ENST00000450940 ANO8Q9HCE9 1232 aaPredicted RBP26.7■■□□□ 1.86
USP40-207ENST00000450940 NSD2O96028 1365 aa26.7■■□□□ 1.86
USP40-207ENST00000450940 PPM1GO15355 546 aaPredicted RBP26.67■■□□□ 1.86
USP40-207ENST00000450940 TATP17735 454 aaPredicted RBP26.67■■□□□ 1.86
USP40-207ENST00000450940 DOT1LQ8TEK3 1739 aa26.67■■□□□ 1.86
USP40-207ENST00000450940 CASZ1Q86V15 1759 aa26.66■■□□□ 1.86
USP40-207ENST00000450940 KIF7Q2M1P5 1343 aa26.65■■□□□ 1.86
USP40-207ENST00000450940 PKD1L3Q7Z443 1732 aa26.64■■□□□ 1.85
USP40-207ENST00000450940 PRIM1P49642 420 aaKnown RBP26.63■■□□□ 1.85
USP40-207ENST00000450940 PAPPAQ13219 1627 aa26.63■■□□□ 1.85
USP40-207ENST00000450940 TNNT2P45379 298 aaPredicted RBP26.61■■□□□ 1.85
USP40-207ENST00000450940 SLC15A2Q16348 729 aa26.61■■□□□ 1.85
USP40-207ENST00000450940 EYA1Q99502 592 aa26.61■■□□□ 1.85
USP40-207ENST00000450940 PCDH11XQ9BZA7 1347 aa26.61■■□□□ 1.85
USP40-207ENST00000450940 PCDH11YQ9BZA8 1340 aa26.61■■□□□ 1.85
USP40-207ENST00000450940 STK32BQ9NY57 414 aa26.6■■□□□ 1.85
USP40-207ENST00000450940 KNSTRNQ9Y448 316 aa26.6■■□□□ 1.85
USP40-207ENST00000450940 LY75O60449 1722 aa26.59■■□□□ 1.85
USP40-207ENST00000450940 SPON1Q9HCB6 807 aa26.59■■□□□ 1.85
USP40-207ENST00000450940 EIF4A2Q14240 407 aaKnown RBP26.58■■□□□ 1.85
USP40-207ENST00000450940 LRRC4BQ9NT99 713 aa26.58■■□□□ 1.85
USP40-207ENST00000450940 CYP27B1O15528 508 aa26.57■■□□□ 1.84
USP40-207ENST00000450940 AMER1Q5JTC6 1135 aaPredicted RBP26.57■■□□□ 1.84
USP40-207ENST00000450940 SLC27A3Q5K4L6 730 aa26.57■■□□□ 1.84
USP40-207ENST00000450940 MORC1Q86VD1 984 aa26.57■■□□□ 1.84
USP40-207ENST00000450940 SYTL4Q96C24 671 aaPredicted RBP26.57■■□□□ 1.84
USP40-207ENST00000450940 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.57■■□□□ 1.841e-6■□□□□ 10.8
USP40-207ENST00000450940 PDGFDQ9GZP0 370 aaPredicted RBP26.56■■□□□ 1.84
USP40-207ENST00000450940 PLEKHG2Q9H7P9 1386 aa26.55■■□□□ 1.84
USP40-207ENST00000450940 PER1O15534 1290 aaPredicted RBP26.54■■□□□ 1.84
USP40-207ENST00000450940 NKX1-1Q15270 411 aaPredicted RBP26.53■■□□□ 1.84
USP40-207ENST00000450940 SPG7Q9UQ90 795 aa26.53■■□□□ 1.84
USP40-207ENST00000450940 ITGB4P16144 1822 aa26.53■■□□□ 1.84
USP40-207ENST00000450940 IGSF1Q8N6C5 1336 aa26.52■■□□□ 1.84
USP40-207ENST00000450940 TOGARAM1Q9Y4F4 1720 aa26.52■■□□□ 1.84
USP40-207ENST00000450940 QSER1Q2KHR3 1735 aa26.51■■□□□ 1.83
USP40-207ENST00000450940 AKT1S1Q96B36 256 aa26.5■■□□□ 1.83
USP40-207ENST00000450940 ZNF827Q17R98 1081 aa26.49■■□□□ 1.83
USP40-207ENST00000450940 ZBTB7AO95365 584 aa26.46■■□□□ 1.83
USP40-207ENST00000450940 PTGER2P43116 358 aa26.45■■□□□ 1.82
USP40-207ENST00000450940 MTFR1LQ9H019 292 aa26.45■■□□□ 1.82
USP40-207ENST00000450940 KCNQ4P56696 695 aa26.44■■□□□ 1.82
USP40-207ENST00000450940 IFNL2Q8IZJ0 200 aa26.44■■□□□ 1.82
USP40-207ENST00000450940 NPC1L1Q9UHC9 1359 aa26.44■■□□□ 1.82
USP40-207ENST00000450940 TUBGCP6Q96RT7 1819 aa26.44■■□□□ 1.82
USP40-207ENST00000450940 PHKG2P15735 406 aa26.43■■□□□ 1.82
USP40-207ENST00000450940 MPRIPQ6WCQ1 1025 aa26.43■■□□□ 1.82
USP40-207ENST00000450940 PPP1R1BQ9UD71 204 aaPredicted RBP26.43■■□□□ 1.82
USP40-207ENST00000450940 CCNL1Q9UK58 526 aaPredicted RBP26.43■■□□□ 1.82
USP40-207ENST00000450940 SGIP1Q9BQI5 828 aa26.42■■□□□ 1.82
USP40-207ENST00000450940 IL13P35225 146 aa26.41■■□□□ 1.82
USP40-207ENST00000450940 ATF5Q9Y2D1 282 aaPredicted RBP26.41■■□□□ 1.82
USP40-207ENST00000450940 TAF1LQ8IZX4 1826 aa26.41■■□□□ 1.82
USP40-207ENST00000450940 PIGBQ92521 554 aa26.4■■□□□ 1.82
USP40-207ENST00000450940 COL24A1Q17RW2 1714 aa26.39■■□□□ 1.82
USP40-207ENST00000450940 KDRP35968 1356 aa26.39■■□□□ 1.82
USP40-207ENST00000450940 PALLDQ8WX93 1383 aa26.39■■□□□ 1.82
USP40-207ENST00000450940 HMGB2P26583 209 aaKnown RBP26.39■■□□□ 1.82
USP40-207ENST00000450940 SLC16A10Q8TF71 515 aa26.39■■□□□ 1.82
USP40-207ENST00000450940 SMARCC1Q92922 1105 aaPredicted RBP26.39■■□□□ 1.82
USP40-207ENST00000450940 PNPLA7Q6ZV29 1317 aa26.39■■□□□ 1.81
USP40-207ENST00000450940 C5P01031 1676 aa26.38■■□□□ 1.81
USP40-207ENST00000450940 MTHFSP49914 203 aa26.38■■□□□ 1.81
USP40-207ENST00000450940 PLEKHO1Q53GL0 409 aaPredicted RBP26.37■■□□□ 1.81
USP40-207ENST00000450940 AMOTQ4VCS5 1084 aa26.36■■□□□ 1.81
USP40-207ENST00000450940 CC2D1BQ5T0F9 858 aaKnown RBP26.36■■□□□ 1.81
USP40-207ENST00000450940 AEBP1Q8IUX7 1158 aa26.36■■□□□ 1.81
USP40-207ENST00000450940 TFCP2L1Q9NZI6 479 aa26.36■■□□□ 1.81
USP40-207ENST00000450940 TMOD3Q9NYL9 352 aa26.34■■□□□ 1.81
USP40-207ENST00000450940 HSP90AB1P08238 724 aaKnown RBP26.33■■□□□ 1.81
USP40-207ENST00000450940 SULT6B1Q6IMI4 303 aa26.33■■□□□ 1.81
USP40-207ENST00000450940 ERVV-2B6SEH9 535 aa26.32■■□□□ 1.8
USP40-207ENST00000450940 DCAF5Q96JK2 942 aa26.32■■□□□ 1.8
USP40-207ENST00000450940 ZNF530Q6P9A1 599 aaPredicted RBP26.3■■□□□ 1.8
USP40-207ENST00000450940 C4BP0C0L5 1744 aa26.3■■□□□ 1.8
USP40-207ENST00000450940 ASAP1Q9ULH1 1129 aa26.29■■□□□ 1.8
USP40-207ENST00000450940 ARXQ96QS3 562 aa26.28■■□□□ 1.8
USP40-207ENST00000450940 ATG3Q9NT62 314 aa26.28■■□□□ 1.8
USP40-207ENST00000450940 KDM6AO15550 1401 aaPredicted RBP26.28■■□□□ 1.8
USP40-207ENST00000450940 LOC102724428A0A0B4J2F2 783 aa26.27■■□□□ 1.8
USP40-207ENST00000450940 SIK1P57059 783 aa26.27■■□□□ 1.8
USP40-207ENST00000450940 COL23A1Q86Y22 540 aaPredicted RBP26.27■■□□□ 1.8
USP40-207ENST00000450940 ZNF831Q5JPB2 1677 aa26.27■■□□□ 1.8
USP40-207ENST00000450940 MAP3K5Q99683 1374 aa26.26■■□□□ 1.79
USP40-207ENST00000450940 DIAPH1O60610 1272 aaKnown RBP26.26■■□□□ 1.79
USP40-207ENST00000450940 FHDC1Q9C0D6 1143 aaPredicted RBP26.26■■□□□ 1.79
USP40-207ENST00000450940 UBR3Q6ZT12 1888 aa26.25■■□□□ 1.79
USP40-207ENST00000450940 COL3A1P02461 1466 aaPredicted RBP26.25■■□□□ 1.79
USP40-207ENST00000450940 FLAD1Q8NFF5 587 aa26.25■■□□□ 1.79
USP40-207ENST00000450940 SYT17Q9BSW7 474 aa26.25■■□□□ 1.79
USP40-207ENST00000450940 SCN11AQ9UI33 1791 aa26.25■■□□□ 1.79
USP40-207ENST00000450940 C1orf141Q5JVX7 400 aa26.24■■□□□ 1.79
USP40-207ENST00000450940 POLD1P28340 1107 aa26.21■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms