RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 CKAP4Q07065 602 aaKnown RBP10.41□□□□□ -0.74
NIPBL-202ENST00000448238 C22orf23Q9BZE7 217 aa10.41□□□□□ -0.74
NIPBL-202ENST00000448238 TTC12Q9H892 705 aaPredicted RBP10.41□□□□□ -0.74
NIPBL-202ENST00000448238 CDKL5O76039 1030 aa10.4□□□□□ -0.74
NIPBL-202ENST00000448238 IBSPP21815 317 aaPredicted RBP10.4□□□□□ -0.74
NIPBL-202ENST00000448238 CBX1P83916 185 aa10.4□□□□□ -0.74
NIPBL-202ENST00000448238 LIG1P18858 919 aa10.4□□□□□ -0.74
NIPBL-202ENST00000448238 KRT85P78386 507 aa10.4□□□□□ -0.74
NIPBL-202ENST00000448238 MRPS9P82933 396 aaKnown RBP10.4□□□□□ -0.74
NIPBL-202ENST00000448238 ZHX3Q9H4I2 956 aa10.4□□□□□ -0.74
NIPBL-202ENST00000448238 CTAGE6Q86UF2 777 aa10.4□□□□□ -0.74
NIPBL-202ENST00000448238 KIAA1524Q8TCG1 905 aa10.4□□□□□ -0.74
NIPBL-202ENST00000448238 SFPQP23246 707 aaKnown RBP eCLIP10.4□□□□□ -0.75
NIPBL-202ENST00000448238 TUBB4BP68371 445 aa10.4□□□□□ -0.75
NIPBL-202ENST00000448238 RGS22Q8NE09 1264 aa10.4□□□□□ -0.75
NIPBL-202ENST00000448238 PRPF40AO75400 957 aaKnown RBP10.39□□□□□ -0.75
NIPBL-202ENST00000448238 CETN1Q12798 172 aa10.39□□□□□ -0.75
NIPBL-202ENST00000448238 SERPINA10Q9UK55 444 aa10.39□□□□□ -0.75
NIPBL-202ENST00000448238 VIMP08670 466 aaKnown RBP10.39□□□□□ -0.75
NIPBL-202ENST00000448238 FKBP15Q5T1M5 1219 aa10.39□□□□□ -0.75
NIPBL-202ENST00000448238 PPP4R3AQ6IN85 833 aa10.39□□□□□ -0.75
NIPBL-202ENST00000448238 ALS2CR12Q96Q35 445 aa10.39□□□□□ -0.75
NIPBL-202ENST00000448238 HLTFQ14527 1009 aaKnown RBP eCLIP10.39□□□□□ -0.752e-6■□□□□ 11.1
NIPBL-202ENST00000448238 NFKBIBQ15653 356 aa10.39□□□□□ -0.75
NIPBL-202ENST00000448238 ME1P48163 572 aa10.39□□□□□ -0.75
NIPBL-202ENST00000448238 MCM6Q14566 821 aa10.39□□□□□ -0.75
NIPBL-202ENST00000448238 SETDB1Q15047 1291 aa10.39□□□□□ -0.75
NIPBL-202ENST00000448238 CCDC178Q5BJE1 867 aa10.39□□□□□ -0.75
NIPBL-202ENST00000448238 ZCCHC6Q5VYS8 1495 aaKnown RBP10.39□□□□□ -0.75
NIPBL-202ENST00000448238 NDC80O14777 642 aa10.39□□□□□ -0.75
NIPBL-202ENST00000448238 API5Q9BZZ5 524 aaKnown RBP10.39□□□□□ -0.75
NIPBL-202ENST00000448238 ZBTB16Q05516 673 aa10.39□□□□□ -0.75
NIPBL-202ENST00000448238 DRC1Q96MC2 740 aa10.39□□□□□ -0.75
NIPBL-202ENST00000448238 CTNNBL1Q8WYA6 563 aaPredicted RBP10.38□□□□□ -0.75
NIPBL-202ENST00000448238 IFI16Q16666 785 aaKnown RBP10.38□□□□□ -0.75
NIPBL-202ENST00000448238 TMEM87AQ8NBN3 555 aa10.38□□□□□ -0.75
NIPBL-202ENST00000448238 ATP6V1E1P36543 226 aa10.38□□□□□ -0.75
NIPBL-202ENST00000448238 WASHC4Q2M389 1173 aa10.38□□□□□ -0.75
NIPBL-202ENST00000448238 NUF2Q9BZD4 464 aa10.38□□□□□ -0.75
NIPBL-202ENST00000448238 CEP131Q9UPN4 1083 aa10.38□□□□□ -0.75
NIPBL-202ENST00000448238 WDR33Q9C0J8 1336 aaKnown RBP10.38□□□□□ -0.75
NIPBL-202ENST00000448238 APBB1IPQ7Z5R6 666 aaPredicted RBP10.38□□□□□ -0.75
NIPBL-202ENST00000448238 MPHOSPH10O00566 681 aaKnown RBP10.38□□□□□ -0.75
NIPBL-202ENST00000448238 CACNA2D3Q8IZS8 1091 aa10.38□□□□□ -0.75
NIPBL-202ENST00000448238 UPF3BQ9BZI7 483 aaKnown RBP10.38□□□□□ -0.75
NIPBL-202ENST00000448238 MAP7Q14244 749 aa10.37□□□□□ -0.75
NIPBL-202ENST00000448238 EHBP1Q8NDI1 1231 aa10.37□□□□□ -0.75
NIPBL-202ENST00000448238 CLIP2Q9UDT6 1046 aa10.37□□□□□ -0.75
NIPBL-202ENST00000448238 FOSBP53539 338 aa10.37□□□□□ -0.75
NIPBL-202ENST00000448238 TNIP1Q15025 636 aa10.37□□□□□ -0.75
NIPBL-202ENST00000448238 EPSTI1Q96J88 318 aa10.37□□□□□ -0.75
NIPBL-202ENST00000448238 ALDH3A1P30838 453 aa10.37□□□□□ -0.75
NIPBL-202ENST00000448238 MSH5O43196 834 aa10.37□□□□□ -0.75
NIPBL-202ENST00000448238 ERCC6LQ2NKX8 1250 aa10.37□□□□□ -0.75
NIPBL-202ENST00000448238 GBP6Q6ZN66 633 aa10.37□□□□□ -0.75
NIPBL-202ENST00000448238 NUP133Q8WUM0 1156 aa10.37□□□□□ -0.75
NIPBL-202ENST00000448238 TSPYL2Q9H2G4 693 aaPredicted RBP10.37□□□□□ -0.75
NIPBL-202ENST00000448238 NEMFO60524 1076 aa10.37□□□□□ -0.75
NIPBL-202ENST00000448238 CACNA2D4Q7Z3S7 1137 aa10.37□□□□□ -0.75
NIPBL-202ENST00000448238 HSF2BPO75031 334 aa10.37□□□□□ -0.75
NIPBL-202ENST00000448238 VCXQ9H320 206 aa10.37□□□□□ -0.75
NIPBL-202ENST00000448238 ESPNB1AK53 854 aa10.36□□□□□ -0.75
NIPBL-202ENST00000448238 SNX16P57768 344 aa10.36□□□□□ -0.75
NIPBL-202ENST00000448238 DNAJC8O75937 253 aaPredicted RBP10.36□□□□□ -0.75
NIPBL-202ENST00000448238 KIF20AO95235 890 aa10.36□□□□□ -0.75
NIPBL-202ENST00000448238 FLIIQ13045 1269 aa10.36□□□□□ -0.75
NIPBL-202ENST00000448238 PRC1O43663 620 aa10.36□□□□□ -0.75
NIPBL-202ENST00000448238 CCDC89Q8N998 374 aa10.36□□□□□ -0.75
NIPBL-202ENST00000448238 CCDC77Q9BR77 488 aa10.36□□□□□ -0.75
NIPBL-202ENST00000448238 ARL1P40616 181 aaPredicted RBP10.36□□□□□ -0.75
NIPBL-202ENST00000448238 CFAP100Q494V2 611 aa10.36□□□□□ -0.75
NIPBL-202ENST00000448238 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.36□□□□□ -0.75
NIPBL-202ENST00000448238 STMN2Q93045 179 aa10.36□□□□□ -0.75
NIPBL-202ENST00000448238 TSG101Q99816 390 aa10.36□□□□□ -0.75
NIPBL-202ENST00000448238 LMNTD2Q8IXW0 634 aa10.35□□□□□ -0.75
NIPBL-202ENST00000448238 ATP2A1O14983 1001 aa10.35□□□□□ -0.75
NIPBL-202ENST00000448238 NGDNQ8NEJ9 315 aaKnown RBP10.35□□□□□ -0.75
NIPBL-202ENST00000448238 FERMT2Q96AC1 680 aa10.35□□□□□ -0.75
NIPBL-202ENST00000448238 SH3BP5O60239 455 aa10.35□□□□□ -0.75
NIPBL-202ENST00000448238 RSPH3Q86UC2 560 aa10.35□□□□□ -0.75
NIPBL-202ENST00000448238 HYPKQ9NX55 129 aa10.35□□□□□ -0.75
NIPBL-202ENST00000448238 CDC45O75419 566 aa10.35□□□□□ -0.75
NIPBL-202ENST00000448238 LACTBP83111 547 aaPredicted RBP10.35□□□□□ -0.75
NIPBL-202ENST00000448238 SF3B2Q13435 895 aaKnown RBP10.35□□□□□ -0.75
NIPBL-202ENST00000448238 VCX3AQ9NNX9 186 aa10.35□□□□□ -0.75
NIPBL-202ENST00000448238 MACROD2A1Z1Q3 448 aa10.35□□□□□ -0.75
NIPBL-202ENST00000448238 LMAN1P49257 510 aa10.35□□□□□ -0.75
NIPBL-202ENST00000448238 SAFB2Q14151 953 aaKnown RBP eCLIP10.35□□□□□ -0.75
NIPBL-202ENST00000448238 TTC31Q49AM3 519 aaPredicted RBP10.35□□□□□ -0.75
NIPBL-202ENST00000448238 CEP57Q86XR8 500 aa10.35□□□□□ -0.75
NIPBL-202ENST00000448238 GTF2F1P35269 517 aaKnown RBP eCLIP10.34□□□□□ -0.75
NIPBL-202ENST00000448238 WASF1Q92558 559 aa10.34□□□□□ -0.75
NIPBL-202ENST00000448238 PSMD1Q99460 953 aa10.34□□□□□ -0.75
NIPBL-202ENST00000448238 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.34□□□□□ -0.752e-6■■■□□ 19.2
NIPBL-202ENST00000448238 ARID4AP29374 1257 aaPredicted RBP10.34□□□□□ -0.75
NIPBL-202ENST00000448238 EVA1CP58658 441 aa10.34□□□□□ -0.75
NIPBL-202ENST00000448238 CCDC50Q8IVM0 306 aa10.34□□□□□ -0.75
NIPBL-202ENST00000448238 IFT74Q96LB3 600 aa10.34□□□□□ -0.75
NIPBL-202ENST00000448238 RAI14Q9P0K7 980 aa10.34□□□□□ -0.75
NIPBL-202ENST00000448238 FIBPO43427 364 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms