RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 GAS2L2Q8NHY3 880 aa16.75■□□□□ 0.27
SCLT1-202ENST00000439369 MEGF6O75095 1541 aa16.75■□□□□ 0.27
SCLT1-202ENST00000439369 WNK3Q9BYP7 1800 aa16.75■□□□□ 0.27
SCLT1-202ENST00000439369 PKD1L3Q7Z443 1732 aa16.74■□□□□ 0.27
SCLT1-202ENST00000439369 CCDC146Q8IYE0 955 aa16.74■□□□□ 0.27
SCLT1-202ENST00000439369 CCDC9Q9Y3X0 531 aaKnown RBP16.74■□□□□ 0.27
SCLT1-202ENST00000439369 NFE2L2Q16236 605 aa16.73■□□□□ 0.27
SCLT1-202ENST00000439369 PHACTR3Q96KR7 559 aa16.73■□□□□ 0.27
SCLT1-202ENST00000439369 SPG7Q9UQ90 795 aa16.73■□□□□ 0.27
SCLT1-202ENST00000439369 APAF1O14727 1248 aa16.72■□□□□ 0.27
SCLT1-202ENST00000439369 TMPOP42166 694 aaKnown RBP16.72■□□□□ 0.27
SCLT1-202ENST00000439369 CCDC27Q2M243 656 aa16.72■□□□□ 0.27
SCLT1-202ENST00000439369 GJD4Q96KN9 370 aaPredicted RBP16.72■□□□□ 0.27
SCLT1-202ENST00000439369 HTATSF1O43719 755 aaKnown RBP16.71■□□□□ 0.27
SCLT1-202ENST00000439369 LMOD3Q0VAK6 560 aa16.71■□□□□ 0.27
SCLT1-202ENST00000439369 QTRT2Q9H974 415 aaKnown RBP16.71■□□□□ 0.27
SCLT1-202ENST00000439369 USP35Q9P2H5 1018 aa16.71■□□□□ 0.27
SCLT1-202ENST00000439369 GLI3P10071 1580 aa16.71■□□□□ 0.27
SCLT1-202ENST00000439369 ONECUT3O60422 494 aaPredicted RBP16.7■□□□□ 0.26
SCLT1-202ENST00000439369 HNRNPUQ00839 825 aaKnown RBP eCLIP16.7■□□□□ 0.26
SCLT1-202ENST00000439369 MTHFSDQ2M296 383 aaKnown RBP16.7■□□□□ 0.26
SCLT1-202ENST00000439369 ZCRB1Q8TBF4 217 aaKnown RBP16.7■□□□□ 0.26
SCLT1-202ENST00000439369 TNS2Q63HR2 1409 aa16.7■□□□□ 0.26
SCLT1-202ENST00000439369 THSD7AQ9UPZ6 1657 aa16.69■□□□□ 0.26
SCLT1-202ENST00000439369 PCDH11XQ9BZA7 1347 aa16.69■□□□□ 0.26
SCLT1-202ENST00000439369 PCDH11YQ9BZA8 1340 aa16.69■□□□□ 0.26
SCLT1-202ENST00000439369 MAP3K5Q99683 1374 aa16.68■□□□□ 0.26
SCLT1-202ENST00000439369 AKAP4Q5JQC9 854 aa16.68■□□□□ 0.26
SCLT1-202ENST00000439369 ZBED9Q6R2W3 1325 aa16.68■□□□□ 0.26
SCLT1-202ENST00000439369 HSP90AB1P08238 724 aaKnown RBP16.67■□□□□ 0.26
SCLT1-202ENST00000439369 RIPK4P57078 832 aa16.67■□□□□ 0.26
SCLT1-202ENST00000439369 RBM6P78332 1123 aaKnown RBP16.67■□□□□ 0.26
SCLT1-202ENST00000439369 C1orf141Q5JVX7 400 aa16.67■□□□□ 0.26
SCLT1-202ENST00000439369 ZNF530Q6P9A1 599 aaPredicted RBP16.67■□□□□ 0.26
SCLT1-202ENST00000439369 LRRC37A3O60309 1634 aa16.67■□□□□ 0.26
SCLT1-202ENST00000439369 GNAT3A8MTJ3 354 aa16.66■□□□□ 0.26
SCLT1-202ENST00000439369 EXOC5O00471 708 aa16.66■□□□□ 0.26
SCLT1-202ENST00000439369 FAM98CQ17RN3 349 aaKnown RBP16.66■□□□□ 0.26
SCLT1-202ENST00000439369 IFNL2Q8IZJ0 200 aa16.66■□□□□ 0.26
SCLT1-202ENST00000439369 PHKG2P15735 406 aa16.65■□□□□ 0.26
SCLT1-202ENST00000439369 CALD1Q05682 793 aaKnown RBP16.65■□□□□ 0.26
SCLT1-202ENST00000439369 DDB1Q16531 1140 aa16.65■□□□□ 0.26
SCLT1-202ENST00000439369 ADAMTS7Q9UKP4 1686 aa16.65■□□□□ 0.26
SCLT1-202ENST00000439369 ZNF521Q96K83 1311 aa16.65■□□□□ 0.26
SCLT1-202ENST00000439369 SHANK3Q9BYB0 1731 aa16.65■□□□□ 0.26
SCLT1-202ENST00000439369 NKX1-1Q15270 411 aaPredicted RBP16.64■□□□□ 0.25
SCLT1-202ENST00000439369 WWC1Q8IX03 1113 aa16.64■□□□□ 0.25
SCLT1-202ENST00000439369 RTF1Q92541 710 aaKnown RBP16.64■□□□□ 0.25
SCLT1-202ENST00000439369 TRIM35Q9UPQ4 493 aa16.64■□□□□ 0.25
SCLT1-202ENST00000439369 RRP7AQ9Y3A4 280 aaKnown RBP16.64■□□□□ 0.25
SCLT1-202ENST00000439369 DLG5Q8TDM6 1919 aa16.63■□□□□ 0.25
SCLT1-202ENST00000439369 CYP27B1O15528 508 aa16.63■□□□□ 0.25
SCLT1-202ENST00000439369 WDR63Q8IWG1 891 aa16.63■□□□□ 0.25
SCLT1-202ENST00000439369 IL16Q14005 1332 aa16.63■□□□□ 0.25
SCLT1-202ENST00000439369 RXRBP28702 533 aa16.62■□□□□ 0.25
SCLT1-202ENST00000439369 PDE3BQ13370 1112 aa16.62■□□□□ 0.25
SCLT1-202ENST00000439369 NEUROD2Q15784 382 aa16.62■□□□□ 0.25
SCLT1-202ENST00000439369 DCAF5Q96JK2 942 aa16.62■□□□□ 0.25
SCLT1-202ENST00000439369 RGS17Q9UGC6 210 aaPredicted RBP16.62■□□□□ 0.25
SCLT1-202ENST00000439369 CEMIPQ8WUJ3 1361 aa16.62■□□□□ 0.25
SCLT1-202ENST00000439369 BCL9O00512 1426 aa16.6■□□□□ 0.25
SCLT1-202ENST00000439369 SEPT12Q8IYM1 358 aa16.59■□□□□ 0.25
SCLT1-202ENST00000439369 DDX54Q8TDD1 881 aaKnown RBP16.59■□□□□ 0.25
SCLT1-202ENST00000439369 YTHDC1Q96MU7 727 aaKnown RBP16.59■□□□□ 0.25
SCLT1-202ENST00000439369 MRC1P22897 1456 aa16.59■□□□□ 0.25
SCLT1-202ENST00000439369 A0A0G2JS52 829 aa16.58■□□□□ 0.24
SCLT1-202ENST00000439369 RNMTO43148 476 aaKnown RBP16.58■□□□□ 0.24
SCLT1-202ENST00000439369 MYT1Q01538 1121 aa16.58■□□□□ 0.24
SCLT1-202ENST00000439369 GOLGA2Q08379 1002 aa16.58■□□□□ 0.24
SCLT1-202ENST00000439369 IL17REQ8NFR9 667 aa16.58■□□□□ 0.24
SCLT1-202ENST00000439369 BABAM1Q9NWV8 329 aa16.58■□□□□ 0.24
SCLT1-202ENST00000439369 KDM6AO15550 1401 aaPredicted RBP16.58■□□□□ 0.24
SCLT1-202ENST00000439369 SCN11AQ9UI33 1791 aa16.58■□□□□ 0.24
SCLT1-202ENST00000439369 ERVV-2B6SEH9 535 aa16.57■□□□□ 0.24
SCLT1-202ENST00000439369 POTEAQ6S8J7 498 aa16.57■□□□□ 0.24
SCLT1-202ENST00000439369 SALL2Q9Y467 1007 aaPredicted RBP16.57■□□□□ 0.24
SCLT1-202ENST00000439369 E9PSI1 815 aa16.56■□□□□ 0.24
SCLT1-202ENST00000439369 MPRIPQ6WCQ1 1025 aa16.56■□□□□ 0.24
SCLT1-202ENST00000439369 MCM10Q7L590 875 aa16.56■□□□□ 0.24
SCLT1-202ENST00000439369 MARCH10Q8NA82 808 aaPredicted RBP16.56■□□□□ 0.24
SCLT1-202ENST00000439369 IFT57Q9NWB7 429 aa16.56■□□□□ 0.24
SCLT1-202ENST00000439369 GNAI1P63096 354 aa16.55■□□□□ 0.24
SCLT1-202ENST00000439369 TEFQ10587 303 aa16.55■□□□□ 0.24
SCLT1-202ENST00000439369 DCTN1Q14203 1278 aa16.54■□□□□ 0.24
SCLT1-202ENST00000439369 TAF7Q15545 349 aaPredicted RBP16.54■□□□□ 0.24
SCLT1-202ENST00000439369 CFAP44Q96MT7 982 aa16.54■□□□□ 0.24
SCLT1-202ENST00000439369 MYH16Q9H6N6 1097 aa16.54■□□□□ 0.24
SCLT1-202ENST00000439369 LGR6Q9HBX8 967 aa16.54■□□□□ 0.24
SCLT1-202ENST00000439369 RGS12O14924 1447 aa16.53■□□□□ 0.24
SCLT1-202ENST00000439369 ZNF853P0CG23 659 aa16.53■□□□□ 0.24
SCLT1-202ENST00000439369 SLFN5Q08AF3 891 aa16.53■□□□□ 0.24
SCLT1-202ENST00000439369 SLC52A2Q9HAB3 445 aa16.53■□□□□ 0.24
SCLT1-202ENST00000439369 SIPA1L3O60292 1781 aaPredicted RBP16.53■□□□□ 0.24
SCLT1-202ENST00000439369 VIRMAQ69YN4 1812 aaKnown RBP16.52■□□□□ 0.24
SCLT1-202ENST00000439369 SENP3-EIF4A1A0A087X0R7 540 aa16.52■□□□□ 0.24
SCLT1-202ENST00000439369 CHL1O00533 1208 aa16.52■□□□□ 0.24
SCLT1-202ENST00000439369 CABP4P57796 275 aa16.52■□□□□ 0.24
SCLT1-202ENST00000439369 KRT27Q7Z3Y8 459 aa16.52■□□□□ 0.24
SCLT1-202ENST00000439369 TRMT2AQ8IZ69 625 aaKnown RBP16.52■□□□□ 0.24
SCLT1-202ENST00000439369 THUMPD2Q9BTF0 503 aaKnown RBP16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms