RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 AMOTQ4VCS5 1084 aa30.17■■■□□ 2.42
CPSF4-204ENST00000436336 TATP17735 454 aaPredicted RBP30.16■■■□□ 2.42
CPSF4-204ENST00000436336 PLEKHO1Q53GL0 409 aaPredicted RBP30.16■■■□□ 2.42
CPSF4-204ENST00000436336 WDR63Q8IWG1 891 aa30.16■■■□□ 2.42
CPSF4-204ENST00000436336 FBXO41Q8TF61 875 aa30.16■■■□□ 2.42
CPSF4-204ENST00000436336 C8orf37Q96NL8 207 aa30.16■■■□□ 2.42
CPSF4-204ENST00000436336 NGLY1Q96IV0 654 aa30.16■■■□□ 2.42
CPSF4-204ENST00000436336 VIRMAQ69YN4 1812 aaKnown RBP30.15■■■□□ 2.42
CPSF4-204ENST00000436336 MEX3CQ5U5Q3 659 aaKnown RBP30.13■■■□□ 2.41
CPSF4-204ENST00000436336 FNBP4Q8N3X1 1017 aaPredicted RBP30.13■■■□□ 2.41
CPSF4-204ENST00000436336 CDCA7LQ96GN5 454 aa30.12■■■□□ 2.41
CPSF4-204ENST00000436336 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.12■■■□□ 2.41
CPSF4-204ENST00000436336 OVOS2A0A0G2JMS6 1433 aa30.12■■■□□ 2.41
CPSF4-204ENST00000436336 UNC5CLQ8IV45 518 aa30.11■■■□□ 2.41
CPSF4-204ENST00000436336 BCL9LQ86UU0 1499 aa30.11■■■□□ 2.41
CPSF4-204ENST00000436336 HTATSF1O43719 755 aaKnown RBP30.1■■■□□ 2.41
CPSF4-204ENST00000436336 IL2RBP14784 551 aa30.1■■■□□ 2.41
CPSF4-204ENST00000436336 MAP3K5Q99683 1374 aa30.09■■■□□ 2.41
CPSF4-204ENST00000436336 GNAT3A8MTJ3 354 aa30.08■■■□□ 2.41
CPSF4-204ENST00000436336 E9PSI1 815 aa30.08■■■□□ 2.41
CPSF4-204ENST00000436336 SLFN5Q08AF3 891 aa30.08■■■□□ 2.41
CPSF4-204ENST00000436336 USP35Q9P2H5 1018 aa30.08■■■□□ 2.41
CPSF4-204ENST00000436336 SPG7Q9UQ90 795 aa30.08■■■□□ 2.41
CPSF4-204ENST00000436336 IL16Q14005 1332 aa30.08■■■□□ 2.41
CPSF4-204ENST00000436336 CALD1Q05682 793 aaKnown RBP30.08■■■□□ 2.41
CPSF4-204ENST00000436336 ZNF530Q6P9A1 599 aaPredicted RBP30.08■■■□□ 2.41
CPSF4-204ENST00000436336 SHANK3Q9BYB0 1731 aa30.07■■■□□ 2.4
CPSF4-204ENST00000436336 RTF1Q92541 710 aaKnown RBP30.07■■■□□ 2.4
CPSF4-204ENST00000436336 SPATA31A1Q5TZJ5 1347 aa30.06■■■□□ 2.4
CPSF4-204ENST00000436336 LRRC37A3O60309 1634 aa30.06■■■□□ 2.4
CPSF4-204ENST00000436336 AKAP4Q5JQC9 854 aa30.06■■■□□ 2.4
CPSF4-204ENST00000436336 THRAP3Q9Y2W1 955 aaKnown RBP30.05■■■□□ 2.4
CPSF4-204ENST00000436336 DISP2A7MBM2 1401 aa30.05■■■□□ 2.4
CPSF4-204ENST00000436336 SPATA31A5Q5VU36 1347 aa30.05■■■□□ 2.4
CPSF4-204ENST00000436336 SPATA31A7Q8IWB4 1347 aa30.05■■■□□ 2.4
CPSF4-204ENST00000436336 TRMT2AQ8IZ69 625 aaKnown RBP30.05■■■□□ 2.4
CPSF4-204ENST00000436336 SPINK5Q9NQ38 1064 aaPredicted RBP30.05■■■□□ 2.4
CPSF4-204ENST00000436336 C1orf141Q5JVX7 400 aa30.04■■■□□ 2.4
CPSF4-204ENST00000436336 USP21Q9UK80 565 aa30.04■■■□□ 2.4
CPSF4-204ENST00000436336 DCTN1Q14203 1278 aa30.03■■■□□ 2.4
CPSF4-204ENST00000436336 ADAMTS7Q9UKP4 1686 aa30.03■■■□□ 2.4
CPSF4-204ENST00000436336 VPS72Q15906 364 aa30.02■■■□□ 2.4
CPSF4-204ENST00000436336 THUMPD2Q9BTF0 503 aaKnown RBP30.02■■■□□ 2.4
CPSF4-204ENST00000436336 SCN11AQ9UI33 1791 aa30.02■■■□□ 2.4
CPSF4-204ENST00000436336 DUSP27Q5VZP5 1158 aa30.02■■■□□ 2.4
CPSF4-204ENST00000436336 MCM10Q7L590 875 aa30.02■■■□□ 2.4
CPSF4-204ENST00000436336 ZCRB1Q8TBF4 217 aaKnown RBP30.01■■■□□ 2.39
CPSF4-204ENST00000436336 CCDC9Q9Y3X0 531 aaKnown RBP30■■■□□ 2.39
CPSF4-204ENST00000436336 AFF2P51816 1311 aa30■■■□□ 2.39
CPSF4-204ENST00000436336 CDCA7Q9BWT1 371 aaPredicted RBP29.99■■■□□ 2.39
CPSF4-204ENST00000436336 MYH16Q9H6N6 1097 aa29.99■■■□□ 2.39
CPSF4-204ENST00000436336 IFNL2Q8IZJ0 200 aa29.99■■■□□ 2.39
CPSF4-204ENST00000436336 PHKG2P15735 406 aa29.98■■■□□ 2.39
CPSF4-204ENST00000436336 PCDH11XQ9BZA7 1347 aa29.98■■■□□ 2.39
CPSF4-204ENST00000436336 PCDH11YQ9BZA8 1340 aa29.98■■■□□ 2.39
CPSF4-204ENST00000436336 IL17REQ8NFR9 667 aa29.97■■■□□ 2.39
CPSF4-204ENST00000436336 IFT57Q9NWB7 429 aa29.97■■■□□ 2.39
CPSF4-204ENST00000436336 CEMIPQ8WUJ3 1361 aa29.96■■■□□ 2.39
CPSF4-204ENST00000436336 GNAI1P63096 354 aa29.96■■■□□ 2.39
CPSF4-204ENST00000436336 BARGINQ6ZT62 677 aa29.96■■■□□ 2.39
CPSF4-204ENST00000436336 CYP27B1O15528 508 aa29.95■■■□□ 2.38
CPSF4-204ENST00000436336 CFAP44Q96MT7 982 aa29.95■■■□□ 2.38
CPSF4-204ENST00000436336 ZNF853P0CG23 659 aa29.94■■■□□ 2.38
CPSF4-204ENST00000436336 SIPA1L3O60292 1781 aaPredicted RBP29.94■■■□□ 2.38
CPSF4-204ENST00000436336 HSP90AB1P08238 724 aaKnown RBP29.93■■■□□ 2.38
CPSF4-204ENST00000436336 MPRIPQ6WCQ1 1025 aa29.93■■■□□ 2.38
CPSF4-204ENST00000436336 FANCIQ9NVI1 1328 aa29.92■■■□□ 2.38
CPSF4-204ENST00000436336 RNMTO43148 476 aaKnown RBP29.92■■■□□ 2.38
CPSF4-204ENST00000436336 LAS1LQ9Y4W2 734 aaKnown RBP29.92■■■□□ 2.38
CPSF4-204ENST00000436336 ATRNO75882 1429 aa29.92■■■□□ 2.38
CPSF4-204ENST00000436336 LGR6Q9HBX8 967 aa29.91■■■□□ 2.38
CPSF4-204ENST00000436336 TNS2Q63HR2 1409 aa29.91■■■□□ 2.38
CPSF4-204ENST00000436336 GLI3P10071 1580 aa29.9■■■□□ 2.38
CPSF4-204ENST00000436336 KDM6AO15550 1401 aaPredicted RBP29.9■■■□□ 2.38
CPSF4-204ENST00000436336 TSR2Q969E8 191 aaKnown RBP29.9■■■□□ 2.38
CPSF4-204ENST00000436336 TRPC5Q9UL62 973 aaPredicted RBP29.9■■■□□ 2.38
CPSF4-204ENST00000436336 EXOC5O00471 708 aa29.89■■■□□ 2.38
CPSF4-204ENST00000436336 DCAF5Q96JK2 942 aa29.89■■■□□ 2.38
CPSF4-204ENST00000436336 CHL1O00533 1208 aa29.88■■■□□ 2.37
CPSF4-204ENST00000436336 KDM3BQ7LBC6 1761 aa29.87■■■□□ 2.37
CPSF4-204ENST00000436336 NKX1-1Q15270 411 aaPredicted RBP29.87■■■□□ 2.37
CPSF4-204ENST00000436336 DDX54Q8TDD1 881 aaKnown RBP29.87■■■□□ 2.37
CPSF4-204ENST00000436336 MBIPQ9NS73 344 aa29.87■■■□□ 2.37
CPSF4-204ENST00000436336 THSD7AQ9UPZ6 1657 aa29.86■■■□□ 2.37
CPSF4-204ENST00000436336 TEFQ10587 303 aa29.86■■■□□ 2.37
CPSF4-204ENST00000436336 TAF7Q15545 349 aaPredicted RBP29.86■■■□□ 2.37
CPSF4-204ENST00000436336 GJD4Q96KN9 370 aaPredicted RBP29.86■■■□□ 2.37
CPSF4-204ENST00000436336 BABAM1Q9NWV8 329 aa29.86■■■□□ 2.37
CPSF4-204ENST00000436336 MRC1P22897 1456 aa29.85■■■□□ 2.37
CPSF4-204ENST00000436336 DDB1Q16531 1140 aa29.85■■■□□ 2.37
CPSF4-204ENST00000436336 FAM98CQ17RN3 349 aaKnown RBP29.85■■■□□ 2.37
CPSF4-204ENST00000436336 TOGARAM1Q9Y4F4 1720 aa29.82■■■□□ 2.36
CPSF4-204ENST00000436336 TSPYL4Q9UJ04 414 aa29.82■■■□□ 2.36
CPSF4-204ENST00000436336 EXOSC9Q06265 439 aaKnown RBP29.81■■■□□ 2.36
CPSF4-204ENST00000436336 QTRT2Q9H974 415 aaKnown RBP29.81■■■□□ 2.36
CPSF4-204ENST00000436336 RCAN3Q9UKA8 241 aa29.8■■■□□ 2.36
CPSF4-204ENST00000436336 CT47B1P0C2W7 299 aaPredicted RBP29.79■■■□□ 2.36
CPSF4-204ENST00000436336 ZNF772Q68DY9 489 aaPredicted RBP29.79■■■□□ 2.36
CPSF4-204ENST00000436336 SLC52A2Q9HAB3 445 aa29.79■■■□□ 2.36
CPSF4-204ENST00000436336 MIS18AQ9NYP9 233 aa29.79■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms