RNA–Protein interactions for RNA: ENST00000436324.5

HMGN1-207, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,045 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-207ENST00000436324 NUP188Q5SRE5 1749 aa25.08■■□□□ 1.61
HMGN1-207ENST00000436324 TXNRD1Q16881 649 aa25.06■■□□□ 1.6
HMGN1-207ENST00000436324 SYTL4Q96C24 671 aaPredicted RBP25.06■■□□□ 1.6
HMGN1-207ENST00000436324 NSD2O96028 1365 aa25.05■■□□□ 1.6
HMGN1-207ENST00000436324 MAP2P11137 1827 aaKnown RBP25.05■■□□□ 1.6
HMGN1-207ENST00000436324 NHSQ6T4R5 1651 aa25.04■■□□□ 1.6
HMGN1-207ENST00000436324 ANKRD26Q9UPS8 1709 aa25.04■■□□□ 1.6
HMGN1-207ENST00000436324 EYA1Q99502 592 aa25.04■■□□□ 1.6
HMGN1-207ENST00000436324 PRIM1P49642 420 aaKnown RBP25.03■■□□□ 1.6
HMGN1-207ENST00000436324 EIF4A2Q14240 407 aaKnown RBP25.03■■□□□ 1.6
HMGN1-207ENST00000436324 ANO8Q9HCE9 1232 aaPredicted RBP25.03■■□□□ 1.6
HMGN1-207ENST00000436324 KAT6BQ8WYB5 2073 aa25.02■■□□□ 1.6
HMGN1-207ENST00000436324 AMER1Q5JTC6 1135 aaPredicted RBP25.01■■□□□ 1.59
HMGN1-207ENST00000436324 RGPD3A6NKT7 1758 aaPredicted RBP25■■□□□ 1.59
HMGN1-207ENST00000436324 RGPD4Q7Z3J3 1758 aa25■■□□□ 1.59
HMGN1-207ENST00000436324 CNGB1Q14028 1251 aaPredicted RBP24.99■■□□□ 1.59
HMGN1-207ENST00000436324 PCDH11XQ9BZA7 1347 aa24.98■■□□□ 1.59
HMGN1-207ENST00000436324 PCDH11YQ9BZA8 1340 aa24.98■■□□□ 1.59
HMGN1-207ENST00000436324 SHANK3Q9BYB0 1731 aa24.98■■□□□ 1.59
HMGN1-207ENST00000436324 CC2D1BQ5T0F9 858 aaKnown RBP24.97■■□□□ 1.59
HMGN1-207ENST00000436324 STK32BQ9NY57 414 aa24.97■■□□□ 1.59
HMGN1-207ENST00000436324 BTAF1O14981 1849 aa24.96■■□□□ 1.59
HMGN1-207ENST00000436324 CYP27B1O15528 508 aa24.96■■□□□ 1.59
HMGN1-207ENST00000436324 PER1O15534 1290 aaPredicted RBP24.96■■□□□ 1.59
HMGN1-207ENST00000436324 NCAPD2Q15021 1401 aa24.95■■□□□ 1.58
HMGN1-207ENST00000436324 SPG7Q9UQ90 795 aa24.94■■□□□ 1.58
HMGN1-207ENST00000436324 LRP5O75197 1615 aa24.94■■□□□ 1.58
HMGN1-207ENST00000436324 DOT1LQ8TEK3 1739 aa24.93■■□□□ 1.58
HMGN1-207ENST00000436324 LRRC4BQ9NT99 713 aa24.93■■□□□ 1.58
HMGN1-207ENST00000436324 SLC15A2Q16348 729 aa24.92■■□□□ 1.58
HMGN1-207ENST00000436324 PDGFDQ9GZP0 370 aaPredicted RBP24.92■■□□□ 1.58
HMGN1-207ENST00000436324 KCNQ4P56696 695 aa24.91■■□□□ 1.58
HMGN1-207ENST00000436324 IGSF1Q8N6C5 1336 aa24.89■■□□□ 1.58
HMGN1-207ENST00000436324 MPRIPQ6WCQ1 1025 aa24.89■■□□□ 1.58
HMGN1-207ENST00000436324 MTHFSP49914 203 aa24.88■■□□□ 1.57
HMGN1-207ENST00000436324 SPON1Q9HCB6 807 aa24.87■■□□□ 1.57
HMGN1-207ENST00000436324 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.87■■□□□ 1.578e-8■■□□□ 13
HMGN1-207ENST00000436324 ZBTB7AO95365 584 aa24.86■■□□□ 1.57
HMGN1-207ENST00000436324 ZNF827Q17R98 1081 aa24.86■■□□□ 1.57
HMGN1-207ENST00000436324 SLC27A3Q5K4L6 730 aa24.86■■□□□ 1.57
HMGN1-207ENST00000436324 AEBP1Q8IUX7 1158 aa24.86■■□□□ 1.57
HMGN1-207ENST00000436324 IL13P35225 146 aa24.85■■□□□ 1.57
HMGN1-207ENST00000436324 IFNL2Q8IZJ0 200 aa24.85■■□□□ 1.57
HMGN1-207ENST00000436324 PKD1L3Q7Z443 1732 aa24.85■■□□□ 1.57
HMGN1-207ENST00000436324 SRCAPQ6ZRS2 3230 aa24.84■■□□□ 1.57
HMGN1-207ENST00000436324 PHKG2P15735 406 aa24.84■■□□□ 1.57
HMGN1-207ENST00000436324 NKX1-1Q15270 411 aaPredicted RBP24.84■■□□□ 1.57
HMGN1-207ENST00000436324 CCNL1Q9UK58 526 aaPredicted RBP24.84■■□□□ 1.57
HMGN1-207ENST00000436324 SULT6B1Q6IMI4 303 aa24.83■■□□□ 1.57
HMGN1-207ENST00000436324 ATF5Q9Y2D1 282 aaPredicted RBP24.83■■□□□ 1.57
HMGN1-207ENST00000436324 PLEKHO1Q53GL0 409 aaPredicted RBP24.82■■□□□ 1.56
HMGN1-207ENST00000436324 PPP1R1BQ9UD71 204 aaPredicted RBP24.82■■□□□ 1.56
HMGN1-207ENST00000436324 PIGBQ92521 554 aa24.81■■□□□ 1.56
HMGN1-207ENST00000436324 PAPPAQ13219 1627 aa24.8■■□□□ 1.56
HMGN1-207ENST00000436324 AKT1S1Q96B36 256 aa24.8■■□□□ 1.56
HMGN1-207ENST00000436324 ZNF530Q6P9A1 599 aaPredicted RBP24.79■■□□□ 1.56
HMGN1-207ENST00000436324 PALLDQ8WX93 1383 aa24.79■■□□□ 1.56
HMGN1-207ENST00000436324 NPC1L1Q9UHC9 1359 aa24.79■■□□□ 1.56
HMGN1-207ENST00000436324 TOGARAM1Q9Y4F4 1720 aa24.78■■□□□ 1.56
HMGN1-207ENST00000436324 CASZ1Q86V15 1759 aa24.78■■□□□ 1.56
HMGN1-207ENST00000436324 TMOD3Q9NYL9 352 aa24.78■■□□□ 1.56
HMGN1-207ENST00000436324 TFCP2L1Q9NZI6 479 aa24.78■■□□□ 1.56
HMGN1-207ENST00000436324 DIAPH1O60610 1272 aaKnown RBP24.76■■□□□ 1.55
HMGN1-207ENST00000436324 HMOX1P09601 288 aa24.76■■□□□ 1.55
HMGN1-207ENST00000436324 AMOTQ4VCS5 1084 aa24.76■■□□□ 1.55
HMGN1-207ENST00000436324 SMARCC1Q92922 1105 aaPredicted RBP24.76■■□□□ 1.55
HMGN1-207ENST00000436324 LY75O60449 1722 aa24.75■■□□□ 1.55
HMGN1-207ENST00000436324 MTFR1LQ9H019 292 aa24.74■■□□□ 1.55
HMGN1-207ENST00000436324 PLEKHG2Q9H7P9 1386 aa24.73■■□□□ 1.55
HMGN1-207ENST00000436324 HSP90AB1P08238 724 aaKnown RBP24.73■■□□□ 1.55
HMGN1-207ENST00000436324 PTGER2P43116 358 aa24.73■■□□□ 1.55
HMGN1-207ENST00000436324 C1orf141Q5JVX7 400 aa24.73■■□□□ 1.55
HMGN1-207ENST00000436324 ASAP1Q9ULH1 1129 aa24.73■■□□□ 1.55
HMGN1-207ENST00000436324 ITGB4P16144 1822 aa24.72■■□□□ 1.55
HMGN1-207ENST00000436324 KDRP35968 1356 aa24.72■■□□□ 1.55
HMGN1-207ENST00000436324 PNPLA7Q6ZV29 1317 aa24.72■■□□□ 1.55
HMGN1-207ENST00000436324 DCAF5Q96JK2 942 aa24.72■■□□□ 1.55
HMGN1-207ENST00000436324 MSH5O43196 834 aa24.7■■□□□ 1.54
HMGN1-207ENST00000436324 ERVV-2B6SEH9 535 aa24.69■■□□□ 1.54
HMGN1-207ENST00000436324 U2SURPO15042 1029 aaKnown RBP24.69■■□□□ 1.54
HMGN1-207ENST00000436324 CABP4P57796 275 aa24.68■■□□□ 1.54
HMGN1-207ENST00000436324 ATG3Q9NT62 314 aa24.68■■□□□ 1.54
HMGN1-207ENST00000436324 LOC102724428A0A0B4J2F2 783 aa24.67■■□□□ 1.54
HMGN1-207ENST00000436324 SIK1P57059 783 aa24.67■■□□□ 1.54
HMGN1-207ENST00000436324 KDM6AO15550 1401 aaPredicted RBP24.67■■□□□ 1.54
HMGN1-207ENST00000436324 COL23A1Q86Y22 540 aaPredicted RBP24.65■■□□□ 1.54
HMGN1-207ENST00000436324 SGIP1Q9BQI5 828 aa24.65■■□□□ 1.54
HMGN1-207ENST00000436324 COL3A1P02461 1466 aaPredicted RBP24.64■■□□□ 1.54
HMGN1-207ENST00000436324 PPP2R1AP30153 589 aa24.64■■□□□ 1.54
HMGN1-207ENST00000436324 ATP6V1AP38606 617 aa24.64■■□□□ 1.54
HMGN1-207ENST00000436324 SLC16A10Q8TF71 515 aa24.64■■□□□ 1.54
HMGN1-207ENST00000436324 CFAP53Q96M91 514 aa24.64■■□□□ 1.54
HMGN1-207ENST00000436324 RBM42Q9BTD8 480 aaKnown RBP24.64■■□□□ 1.54
HMGN1-207ENST00000436324 HMGB2P26583 209 aaKnown RBP24.63■■□□□ 1.53
HMGN1-207ENST00000436324 AKAP4Q5JQC9 854 aa24.63■■□□□ 1.53
HMGN1-207ENST00000436324 LINC00116Q8NCU8 138 aa24.63■■□□□ 1.53
HMGN1-207ENST00000436324 AK7Q96M32 723 aa24.63■■□□□ 1.53
HMGN1-207ENST00000436324 ITPK1Q13572 414 aa24.62■■□□□ 1.53
HMGN1-207ENST00000436324 MTHFSDQ2M296 383 aaKnown RBP24.62■■□□□ 1.53
HMGN1-207ENST00000436324 SMIM5Q71RC9 77 aa24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms