RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 GPT2Q8TD30 523 aa10.59□□□□□ -0.71
USP40-203ENST00000427112 SPG7Q9UQ90 795 aa10.59□□□□□ -0.71
USP40-203ENST00000427112 INTS3Q68E01 1043 aaKnown RBP10.59□□□□□ -0.71
USP40-203ENST00000427112 CASC1Q6TDU7 716 aa10.59□□□□□ -0.71
USP40-203ENST00000427112 IL25Q9H293 177 aa10.59□□□□□ -0.71
USP40-203ENST00000427112 ABCC11Q96J66 1382 aa10.59□□□□□ -0.71
USP40-203ENST00000427112 ALDH1L2Q3SY69 923 aa10.59□□□□□ -0.71
USP40-203ENST00000427112 TMEM63CQ9P1W3 806 aa10.59□□□□□ -0.71
USP40-203ENST00000427112 PPRC1Q5VV67 1664 aaKnown RBP10.59□□□□□ -0.71
USP40-203ENST00000427112 ST18O60284 1047 aa10.58□□□□□ -0.72
USP40-203ENST00000427112 LRRFIP2Q9Y608 721 aaKnown RBP10.58□□□□□ -0.72
USP40-203ENST00000427112 SHPRHQ149N8 1683 aa10.58□□□□□ -0.72
USP40-203ENST00000427112 QRICH2Q9H0J4 1663 aa10.58□□□□□ -0.72
USP40-203ENST00000427112 FBXW7Q969H0 707 aa10.58□□□□□ -0.72
USP40-203ENST00000427112 KIF1BO60333 1816 aa10.58□□□□□ -0.72
USP40-203ENST00000427112 FIBPO43427 364 aa10.58□□□□□ -0.72
USP40-203ENST00000427112 PHAXQ9H814 394 aaKnown RBP10.58□□□□□ -0.72
USP40-203ENST00000427112 WASLO00401 505 aaPredicted RBP10.57□□□□□ -0.72
USP40-203ENST00000427112 PIP4K2AP48426 406 aaPredicted RBP10.57□□□□□ -0.72
USP40-203ENST00000427112 MTHFSDQ2M296 383 aaKnown RBP10.57□□□□□ -0.72
USP40-203ENST00000427112 FERMT3Q86UX7 667 aa10.57□□□□□ -0.72
USP40-203ENST00000427112 IFT57Q9NWB7 429 aa10.57□□□□□ -0.72
USP40-203ENST00000427112 YTHDC2Q9H6S0 1430 aaKnown RBP10.57□□□□□ -0.72
USP40-203ENST00000427112 ZDHHC9Q9Y397 364 aa10.57□□□□□ -0.72
USP40-203ENST00000427112 SURF6O75683 361 aaKnown RBP10.57□□□□□ -0.72
USP40-203ENST00000427112 FAM173BQ6P4H8 233 aa10.57□□□□□ -0.72
USP40-203ENST00000427112 TMX3Q96JJ7 454 aa10.57□□□□□ -0.72
USP40-203ENST00000427112 DCTPP1Q9H773 170 aa10.57□□□□□ -0.72
USP40-203ENST00000427112 LMBRD1Q9NUN5 540 aa10.57□□□□□ -0.72
USP40-203ENST00000427112 LAMC1P11047 1609 aa10.57□□□□□ -0.72
USP40-203ENST00000427112 AIMP1Q12904 312 aaKnown RBP10.56□□□□□ -0.72
USP40-203ENST00000427112 CWC27Q6UX04 472 aaKnown RBP10.56□□□□□ -0.72
USP40-203ENST00000427112 SPC24Q8NBT2 197 aa10.56□□□□□ -0.72
USP40-203ENST00000427112 SNX21Q969T3 373 aa10.56□□□□□ -0.72
USP40-203ENST00000427112 RABEP1Q15276 862 aa10.56□□□□□ -0.72
USP40-203ENST00000427112 STK31Q9BXU1 1019 aa10.56□□□□□ -0.72
USP40-203ENST00000427112 TET3O43151 1660 aa10.55□□□□□ -0.72
USP40-203ENST00000427112 POGZQ7Z3K3 1410 aa10.55□□□□□ -0.72
USP40-203ENST00000427112 CT47B1P0C2W7 299 aaPredicted RBP10.55□□□□□ -0.72
USP40-203ENST00000427112 PDE1AP54750 535 aa10.55□□□□□ -0.72
USP40-203ENST00000427112 NLRP6P59044 892 aa10.55□□□□□ -0.72
USP40-203ENST00000427112 AAMPQ13685 434 aa10.55□□□□□ -0.72
USP40-203ENST00000427112 SIL1Q9H173 461 aa10.55□□□□□ -0.72
USP40-203ENST00000427112 NDUFB9Q9Y6M9 179 aa10.55□□□□□ -0.72
USP40-203ENST00000427112 SETD1BQ9UPS6 1966 aaKnown RBP10.55□□□□□ -0.72
USP40-203ENST00000427112 ACEP12821 1306 aa10.55□□□□□ -0.72
USP40-203ENST00000427112 ERC2O15083 957 aa10.55□□□□□ -0.72
USP40-203ENST00000427112 ANKRD44Q8N8A2 993 aa10.55□□□□□ -0.72
USP40-203ENST00000427112 CCDC61Q9Y6R9 512 aa10.55□□□□□ -0.72
USP40-203ENST00000427112 RPGRIP1LQ68CZ1 1315 aa10.54□□□□□ -0.72
USP40-203ENST00000427112 SLC52A1Q9NWF4 448 aa10.54□□□□□ -0.72
USP40-203ENST00000427112 USP25Q9UHP3 1055 aa10.54□□□□□ -0.72
USP40-203ENST00000427112 VPS37CA5D8V6 355 aaPredicted RBP10.54□□□□□ -0.72
USP40-203ENST00000427112 KDM4AO75164 1064 aa10.54□□□□□ -0.72
USP40-203ENST00000427112 PDE4CQ08493 712 aa10.54□□□□□ -0.72
USP40-203ENST00000427112 STK3Q13188 491 aa10.54□□□□□ -0.72
USP40-203ENST00000427112 TTC12Q9H892 705 aaPredicted RBP10.54□□□□□ -0.72
USP40-203ENST00000427112 NAP1L2Q9ULW6 460 aaPredicted RBP10.54□□□□□ -0.72
USP40-203ENST00000427112 EFCAB6Q5THR3 1501 aa10.54□□□□□ -0.72
USP40-203ENST00000427112 LRRC7Q96NW7 1537 aa10.54□□□□□ -0.72
USP40-203ENST00000427112 PRR36Q9H6K5 1346 aa10.54□□□□□ -0.72
USP40-203ENST00000427112 DDIT3P35638 169 aa10.54□□□□□ -0.72
USP40-203ENST00000427112 KCNJ4P48050 445 aa10.54□□□□□ -0.72
USP40-203ENST00000427112 METP08581 1390 aa10.53□□□□□ -0.72
USP40-203ENST00000427112 ABCC4O15439 1325 aa10.53□□□□□ -0.72
USP40-203ENST00000427112 KCNQ3O43525 872 aa10.53□□□□□ -0.72
USP40-203ENST00000427112 GLI2P10070 1586 aa10.53□□□□□ -0.72
USP40-203ENST00000427112 SKOR2Q2VWA4 1001 aaPredicted RBP10.53□□□□□ -0.72
USP40-203ENST00000427112 NECAB1Q8N987 351 aa10.53□□□□□ -0.72
USP40-203ENST00000427112 PA2G4Q9UQ80 394 aaKnown RBP10.53□□□□□ -0.72
USP40-203ENST00000427112 CNPY2Q9Y2B0 182 aa10.53□□□□□ -0.72
USP40-203ENST00000427112 CAMSAP1Q5T5Y3 1602 aa10.53□□□□□ -0.72
USP40-203ENST00000427112 MYOM2P54296 1465 aa10.53□□□□□ -0.72
USP40-203ENST00000427112 CAMK4Q16566 473 aa10.53□□□□□ -0.72
USP40-203ENST00000427112 KLHL40Q2TBA0 621 aa10.53□□□□□ -0.72
USP40-203ENST00000427112 MAP3K19Q56UN5 1328 aa10.53□□□□□ -0.72
USP40-203ENST00000427112 IGSF3O75054 1194 aa10.53□□□□□ -0.72
USP40-203ENST00000427112 SBNO2Q9Y2G9 1366 aa10.52□□□□□ -0.72
USP40-203ENST00000427112 ADGRB1O14514 1584 aa10.52□□□□□ -0.72
USP40-203ENST00000427112 IL16Q14005 1332 aa10.52□□□□□ -0.72
USP40-203ENST00000427112 CEBPZQ03701 1054 aaKnown RBP10.52□□□□□ -0.73
USP40-203ENST00000427112 COL9A3Q14050 684 aaPredicted RBP10.52□□□□□ -0.73
USP40-203ENST00000427112 REC8O95072 547 aa10.52□□□□□ -0.73
USP40-203ENST00000427112 ZSCAN30Q86W11 494 aa10.52□□□□□ -0.73
USP40-203ENST00000427112 ZBTB9Q96C00 473 aa10.52□□□□□ -0.73
USP40-203ENST00000427112 UQCRHLA0A096LP55 91 aa10.51□□□□□ -0.73
USP40-203ENST00000427112 UQCRHP07919 91 aa10.51□□□□□ -0.73
USP40-203ENST00000427112 HCLS1P14317 486 aaPredicted RBP10.51□□□□□ -0.73
USP40-203ENST00000427112 MX1P20591 662 aa10.51□□□□□ -0.73
USP40-203ENST00000427112 KLHDC4Q8TBB5 520 aa10.51□□□□□ -0.73
USP40-203ENST00000427112 RIMS2Q9UQ26 1411 aa10.51□□□□□ -0.73
USP40-203ENST00000427112 NUCB2P80303 420 aa10.51□□□□□ -0.73
USP40-203ENST00000427112 FLIIQ13045 1269 aa10.51□□□□□ -0.73
USP40-203ENST00000427112 LRRCC1Q9C099 1032 aa10.51□□□□□ -0.73
USP40-203ENST00000427112 SRGAP3O43295 1099 aa10.51□□□□□ -0.73
USP40-203ENST00000427112 GNAI2P04899 355 aa10.51□□□□□ -0.73
USP40-203ENST00000427112 LMOD3Q0VAK6 560 aa10.51□□□□□ -0.73
USP40-203ENST00000427112 CCDC173Q0VFZ6 552 aa10.51□□□□□ -0.73
USP40-203ENST00000427112 GIMAP6Q6P9H5 292 aa10.51□□□□□ -0.73
USP40-203ENST00000427112 CCDC83Q8IWF9 413 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms