RNA–Protein interactions for RNA: ENST00000426681.2

PDGFA-205, Transcript of platelet derived growth factor subunit A, human

TSL 5

Gene PDGFA, Length 357 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDGFA-205	ENST00000426681	SHANK3	Q9BYB0	1731 aa		31.71	■■■□□ 2.67
PDGFA-205	ENST00000426681	PLEKHG2	Q9H7P9	1386 aa		31.7	■■■□□ 2.67
PDGFA-205	ENST00000426681	TNS1	Q9HBL0	1735 aa	Known RBP	31.7	■■■□□ 2.67
PDGFA-205	ENST00000426681	DIAPH1	O60610	1272 aa	Known RBP	31.69	■■■□□ 2.66
PDGFA-205	ENST00000426681	DDX54	Q8TDD1	881 aa	Known RBP	31.69	■■■□□ 2.66
PDGFA-205	ENST00000426681	COL3A1	P02461	1466 aa	Predicted RBP	31.69	■■■□□ 2.66
PDGFA-205	ENST00000426681	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	31.67	■■■□□ 2.66
PDGFA-205	ENST00000426681	PKD1L3	Q7Z443	1732 aa		31.66	■■■□□ 2.66
PDGFA-205	ENST00000426681	BAG6	P46379	1132 aa		31.65	■■■□□ 2.66
PDGFA-205	ENST00000426681	BCL11B	Q9C0K0	894 aa	Predicted RBP	31.65	■■■□□ 2.66
PDGFA-205	ENST00000426681	KDR	P35968	1356 aa		31.65	■■■□□ 2.66
PDGFA-205	ENST00000426681	RALBP1	Q15311	655 aa		31.64	■■■□□ 2.66
PDGFA-205	ENST00000426681	DEFB132	Q7Z7B7	95 aa		31.64	■■■□□ 2.66
PDGFA-205	ENST00000426681	CFAP53	Q96M91	514 aa		31.64	■■■□□ 2.66
PDGFA-205	ENST00000426681	PCDH11X	Q9BZA7	1347 aa		31.64	■■■□□ 2.66
PDGFA-205	ENST00000426681	PCDH11Y	Q9BZA8	1340 aa		31.64	■■■□□ 2.66
PDGFA-205	ENST00000426681	SPG7	Q9UQ90	795 aa		31.63	■■■□□ 2.65
PDGFA-205	ENST00000426681	SULT6B1	Q6IMI4	303 aa		31.62	■■■□□ 2.65
PDGFA-205	ENST00000426681	AEBP1	Q8IUX7	1158 aa		31.62	■■■□□ 2.65
PDGFA-205	ENST00000426681	APBA3	O96018	575 aa		31.6	■■■□□ 2.65
PDGFA-205	ENST00000426681	CYP27B1	O15528	508 aa		31.59	■■■□□ 2.65
PDGFA-205	ENST00000426681	NHS	Q6T4R5	1651 aa		31.59	■■■□□ 2.65
PDGFA-205	ENST00000426681	PTF1A	Q7RTS3	328 aa		31.58	■■■□□ 2.65
PDGFA-205	ENST00000426681	KCNQ2	O43526	872 aa		31.56	■■■□□ 2.64
PDGFA-205	ENST00000426681	EN1	Q05925	392 aa	Predicted RBP	31.56	■■■□□ 2.64
PDGFA-205	ENST00000426681	KAT6B	Q8WYB5	2073 aa		31.55	■■■□□ 2.64
PDGFA-205	ENST00000426681	AMOT	Q4VCS5	1084 aa		31.55	■■■□□ 2.64
PDGFA-205	ENST00000426681	ACSBG1	Q96GR2	724 aa		31.55	■■■□□ 2.64
PDGFA-205	ENST00000426681	CAMKK2	Q96RR4	588 aa		31.55	■■■□□ 2.64
PDGFA-205	ENST00000426681	NKX1-1	Q15270	411 aa	Predicted RBP	31.54	■■■□□ 2.64
PDGFA-205	ENST00000426681	PLEKHO1	Q53GL0	409 aa	Predicted RBP	31.54	■■■□□ 2.64
PDGFA-205	ENST00000426681	PLSCR1	O15162	318 aa		31.53	■■■□□ 2.64
PDGFA-205	ENST00000426681	HMOX1	P09601	288 aa		31.52	■■■□□ 2.64
PDGFA-205	ENST00000426681	NUDC	Q9Y266	331 aa		31.52	■■■□□ 2.64
PDGFA-205	ENST00000426681	U2SURP	O15042	1029 aa	Known RBP	31.51	■■■□□ 2.63
PDGFA-205	ENST00000426681	IFNL2	Q8IZJ0	200 aa		31.51	■■■□□ 2.63
PDGFA-205	ENST00000426681	DOT1L	Q8TEK3	1739 aa		31.51	■■■□□ 2.63
PDGFA-205	ENST00000426681	RGPD3	A6NKT7	1758 aa	Predicted RBP	31.51	■■■□□ 2.63
PDGFA-205	ENST00000426681	RGPD4	Q7Z3J3	1758 aa		31.51	■■■□□ 2.63
PDGFA-205	ENST00000426681	PHKG2	P15735	406 aa		31.5	■■■□□ 2.63
PDGFA-205	ENST00000426681	PRIM1	P49642	420 aa	Known RBP	31.49	■■■□□ 2.63
PDGFA-205	ENST00000426681	EZH2	Q15910	746 aa	Known RBP	31.49	■■■□□ 2.63
PDGFA-205	ENST00000426681	MYBBP1A	Q9BQG0	1328 aa	Known RBP	31.49	■■■□□ 2.63
PDGFA-205	ENST00000426681	PRKRIP1	Q9H875	184 aa	Predicted RBP	31.48	■■■□□ 2.63
PDGFA-205	ENST00000426681	BTAF1	O14981	1849 aa		31.47	■■■□□ 2.63
PDGFA-205	ENST00000426681	ZNF530	Q6P9A1	599 aa	Predicted RBP	31.45	■■■□□ 2.63
PDGFA-205	ENST00000426681	RREB1	Q92766	1687 aa		31.44	■■■□□ 2.62
PDGFA-205	ENST00000426681	SYTL4	Q96C24	671 aa	Predicted RBP	31.43	■■■□□ 2.62
PDGFA-205	ENST00000426681	TOGARAM1	Q9Y4F4	1720 aa		31.43	■■■□□ 2.62
PDGFA-205	ENST00000426681	HSP90AB1	P08238	724 aa	Known RBP	31.42	■■■□□ 2.62
PDGFA-205	ENST00000426681	U2AF1L5	P0DN76	240 aa	Predicted RBP	31.41	■■■□□ 2.62
PDGFA-205	ENST00000426681	U2AF1	Q01081	240 aa	Known RBP eCLIP	31.41	■■■□□ 2.62
PDGFA-205	ENST00000426681	RSPH6A	Q9H0K4	717 aa		31.4	■■■□□ 2.62
PDGFA-205	ENST00000426681	ITGB4	P16144	1822 aa		31.4	■■■□□ 2.62
PDGFA-205	ENST00000426681	FCHSD2	O94868	740 aa		31.39	■■■□□ 2.62
PDGFA-205	ENST00000426681	C1orf141	Q5JVX7	400 aa		31.39	■■■□□ 2.62
PDGFA-205	ENST00000426681	PROM2	Q8N271	834 aa		31.39	■■■□□ 2.62
PDGFA-205	ENST00000426681	DCAF5	Q96JK2	942 aa		31.39	■■■□□ 2.62
PDGFA-205	ENST00000426681	MTHFSD	Q2M296	383 aa	Known RBP	31.37	■■■□□ 2.61
PDGFA-205	ENST00000426681	NUP188	Q5SRE5	1749 aa		31.36	■■■□□ 2.61
PDGFA-205	ENST00000426681	AKAP4	Q5JQC9	854 aa		31.36	■■■□□ 2.61
PDGFA-205	ENST00000426681	ERVV-2	B6SEH9	535 aa		31.35	■■■□□ 2.61
PDGFA-205	ENST00000426681	PRKAR2B	P31323	418 aa		31.35	■■■□□ 2.61
PDGFA-205	ENST00000426681	TXNRD1	Q16881	649 aa		31.35	■■■□□ 2.61
PDGFA-205	ENST00000426681	MPRIP	Q6WCQ1	1025 aa		31.35	■■■□□ 2.61
PDGFA-205	ENST00000426681	KDM6A	O15550	1401 aa	Predicted RBP	31.34	■■■□□ 2.61
PDGFA-205	ENST00000426681	PIGB	Q92521	554 aa		31.33	■■■□□ 2.61
PDGFA-205	ENST00000426681	GAS2L2	Q8NHY3	880 aa		31.31	■■■□□ 2.6
PDGFA-205	ENST00000426681	PHACTR3	Q96KR7	559 aa		31.31	■■■□□ 2.6
PDGFA-205	ENST00000426681	TMOD3	Q9NYL9	352 aa		31.31	■■■□□ 2.6
PDGFA-205	ENST00000426681	LY75	O60449	1722 aa		31.29	■■■□□ 2.6
PDGFA-205	ENST00000426681	SCN11A	Q9UI33	1791 aa		31.29	■■■□□ 2.6
PDGFA-205	ENST00000426681	SLC27A3	Q5K4L6	730 aa		31.28	■■■□□ 2.6
PDGFA-205	ENST00000426681	NBPF14	Q5TI25	921 aa		31.27	■■■□□ 2.6
PDGFA-205	ENST00000426681	ADAMTS7	Q9UKP4	1686 aa		31.26	■■■□□ 2.6
PDGFA-205	ENST00000426681	SMARCC1	Q92922	1105 aa	Predicted RBP	31.26	■■■□□ 2.59
PDGFA-205	ENST00000426681	CABP4	P57796	275 aa		31.25	■■■□□ 2.59
PDGFA-205	ENST00000426681	ANP32C	O43423	234 aa		31.24	■■■□□ 2.59
PDGFA-205	ENST00000426681	PLEKHF1	Q96S99	279 aa		31.24	■■■□□ 2.59
PDGFA-205	ENST00000426681	PNN	Q9H307	717 aa	Known RBP	31.24	■■■□□ 2.59
PDGFA-205	ENST00000426681	LRRC4B	Q9NT99	713 aa		31.24	■■■□□ 2.59
PDGFA-205	ENST00000426681	PALLD	Q8WX93	1383 aa		31.23	■■■□□ 2.59
PDGFA-205	ENST00000426681	MAP3K5	Q99683	1374 aa		31.23	■■■□□ 2.59
PDGFA-205	ENST00000426681	GNAT3	A8MTJ3	354 aa		31.23	■■■□□ 2.59
PDGFA-205	ENST00000426681	RNMT	O43148	476 aa	Known RBP	31.23	■■■□□ 2.59
PDGFA-205	ENST00000426681	LGR6	Q9HBX8	967 aa		31.23	■■■□□ 2.59
PDGFA-205	ENST00000426681	VIRMA	Q69YN4	1812 aa	Known RBP	31.22	■■■□□ 2.59
PDGFA-205	ENST00000426681	ASAP1	Q9ULH1	1129 aa		31.21	■■■□□ 2.59
PDGFA-205	ENST00000426681	NFATC2IP	Q8NCF5	419 aa		31.2	■■■□□ 2.59
PDGFA-205	ENST00000426681	ATG3	Q9NT62	314 aa		31.2	■■■□□ 2.59
PDGFA-205	ENST00000426681	MRC1	P22897	1456 aa		31.2	■■■□□ 2.58
PDGFA-205	ENST00000426681	PAPPA	Q13219	1627 aa		31.2	■■■□□ 2.58
PDGFA-205	ENST00000426681	NEFM	P07197	916 aa		31.19	■■■□□ 2.58
PDGFA-205	ENST00000426681	R3HDM1	Q15032	1099 aa	Known RBP	31.19	■■■□□ 2.58
PDGFA-205	ENST00000426681	SLC52A2	Q9HAB3	445 aa		31.19	■■■□□ 2.58
PDGFA-205	ENST00000426681	CCNL1	Q9UK58	526 aa	Predicted RBP	31.19	■■■□□ 2.58
PDGFA-205	ENST00000426681	ANO8	Q9HCE9	1232 aa	Predicted RBP	31.18	■■■□□ 2.58
PDGFA-205	ENST00000426681	PSD	A5PKW4	1024 aa	Predicted RBP	31.17	■■■□□ 2.58
PDGFA-205	ENST00000426681	IL17RE	Q8NFR9	667 aa		31.17	■■■□□ 2.58
PDGFA-205	ENST00000426681	WDR43	Q15061	677 aa	Known RBP eCLIP	31.16	■■■□□ 2.58

Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms