RNA–Protein interactions for RNA: ENST00000412686.5

CPSF4-202, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 745 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-202ENST00000412686 UPF1Q92900 1129 aaKnown RBP eCLIP10.49□□□□□ -0.73
CPSF4-202ENST00000412686 ZNF316A6NFI3 1004 aaPredicted RBP10.48□□□□□ -0.73
CPSF4-202ENST00000412686 IL2RBP14784 551 aa10.48□□□□□ -0.73
CPSF4-202ENST00000412686 DDB1Q16531 1140 aa10.48□□□□□ -0.73
CPSF4-202ENST00000412686 TNS2Q63HR2 1409 aa10.48□□□□□ -0.73
CPSF4-202ENST00000412686 RGPD1P0DJD0 1748 aa10.47□□□□□ -0.73
CPSF4-202ENST00000412686 PDE3BQ13370 1112 aa10.47□□□□□ -0.73
CPSF4-202ENST00000412686 EYA1Q99502 592 aa10.47□□□□□ -0.73
CPSF4-202ENST00000412686 ATF5Q9Y2D1 282 aaPredicted RBP10.47□□□□□ -0.73
CPSF4-202ENST00000412686 NCAPD2Q15021 1401 aa10.47□□□□□ -0.73
CPSF4-202ENST00000412686 COL3A1P02461 1466 aaPredicted RBP10.47□□□□□ -0.73
CPSF4-202ENST00000412686 PPP2R1AP30153 589 aa10.46□□□□□ -0.73
CPSF4-202ENST00000412686 MARCH10Q8NA82 808 aaPredicted RBP10.46□□□□□ -0.73
CPSF4-202ENST00000412686 PARD3Q8TEW0 1356 aa10.46□□□□□ -0.74
CPSF4-202ENST00000412686 TNS1Q9HBL0 1735 aaKnown RBP10.46□□□□□ -0.74
CPSF4-202ENST00000412686 SBF2Q86WG5 1849 aa10.45□□□□□ -0.74
CPSF4-202ENST00000412686 OVOS2A0A0G2JMS6 1433 aa10.45□□□□□ -0.74
CPSF4-202ENST00000412686 IL13P35225 146 aa10.45□□□□□ -0.74
CPSF4-202ENST00000412686 AEBP1Q8IUX7 1158 aa10.45□□□□□ -0.74
CPSF4-202ENST00000412686 CDCA7Q9BWT1 371 aaPredicted RBP10.45□□□□□ -0.74
CPSF4-202ENST00000412686 IGSF1Q8N6C5 1336 aa10.44□□□□□ -0.74
CPSF4-202ENST00000412686 EXOC5O00471 708 aa10.44□□□□□ -0.74
CPSF4-202ENST00000412686 PKD1L3Q7Z443 1732 aa10.44□□□□□ -0.74
CPSF4-202ENST00000412686 TRIM37O94972 964 aa10.43□□□□□ -0.74
CPSF4-202ENST00000412686 FAM196AQ6ZSG2 479 aa10.43□□□□□ -0.74
CPSF4-202ENST00000412686 PTF1AQ7RTS3 328 aa10.43□□□□□ -0.74
CPSF4-202ENST00000412686 DEFB132Q7Z7B7 95 aa10.43□□□□□ -0.74
CPSF4-202ENST00000412686 DDX54Q8TDD1 881 aaKnown RBP10.43□□□□□ -0.74
CPSF4-202ENST00000412686 RAPGEF4Q8WZA2 1011 aa10.43□□□□□ -0.74
CPSF4-202ENST00000412686 DOT1LQ8TEK3 1739 aa10.42□□□□□ -0.74
CPSF4-202ENST00000412686 DIAPH1O60610 1272 aaKnown RBP10.42□□□□□ -0.74
CPSF4-202ENST00000412686 TATP17735 454 aaPredicted RBP10.42□□□□□ -0.74
CPSF4-202ENST00000412686 DSG3P32926 999 aa10.42□□□□□ -0.74
CPSF4-202ENST00000412686 SULT6B1Q6IMI4 303 aa10.42□□□□□ -0.74
CPSF4-202ENST00000412686 HMOX1P09601 288 aa10.41□□□□□ -0.74
CPSF4-202ENST00000412686 ZCRB1Q8TBF4 217 aaKnown RBP10.41□□□□□ -0.74
CPSF4-202ENST00000412686 ACSBG1Q96GR2 724 aa10.41□□□□□ -0.74
CPSF4-202ENST00000412686 TOGARAM1Q9Y4F4 1720 aa10.41□□□□□ -0.74
CPSF4-202ENST00000412686 NHSQ6T4R5 1651 aa10.41□□□□□ -0.74
CPSF4-202ENST00000412686 U2SURPO15042 1029 aaKnown RBP10.4□□□□□ -0.74
CPSF4-202ENST00000412686 KDRP35968 1356 aa10.39□□□□□ -0.75
CPSF4-202ENST00000412686 CYP27B1O15528 508 aa10.39□□□□□ -0.75
CPSF4-202ENST00000412686 KCNQ2O43526 872 aa10.39□□□□□ -0.75
CPSF4-202ENST00000412686 BCL9O00512 1426 aa10.39□□□□□ -0.75
CPSF4-202ENST00000412686 EN1Q05925 392 aaPredicted RBP10.38□□□□□ -0.75
CPSF4-202ENST00000412686 RALBP1Q15311 655 aa10.38□□□□□ -0.75
CPSF4-202ENST00000412686 CFAP53Q96M91 514 aa10.38□□□□□ -0.75
CPSF4-202ENST00000412686 PRKRIP1Q9H875 184 aaPredicted RBP10.38□□□□□ -0.75
CPSF4-202ENST00000412686 BTAF1O14981 1849 aa10.37□□□□□ -0.75
CPSF4-202ENST00000412686 PCDH11XQ9BZA7 1347 aa10.37□□□□□ -0.75
CPSF4-202ENST00000412686 PCDH11YQ9BZA8 1340 aa10.37□□□□□ -0.75
CPSF4-202ENST00000412686 EP400Q96L91 3159 aa10.37□□□□□ -0.75
CPSF4-202ENST00000412686 SF3B2Q13435 895 aaKnown RBP10.37□□□□□ -0.75
CPSF4-202ENST00000412686 CCDC125Q86Z20 511 aa10.37□□□□□ -0.75
CPSF4-202ENST00000412686 MYBBP1AQ9BQG0 1328 aaKnown RBP10.36□□□□□ -0.75
CPSF4-202ENST00000412686 ABCB7O75027 752 aa10.36□□□□□ -0.75
CPSF4-202ENST00000412686 APBA3O96018 575 aa10.36□□□□□ -0.75
CPSF4-202ENST00000412686 EZH2Q15910 746 aaKnown RBP10.36□□□□□ -0.75
CPSF4-202ENST00000412686 SPG7Q9UQ90 795 aa10.36□□□□□ -0.75
CPSF4-202ENST00000412686 KAT6BQ8WYB5 2073 aa10.36□□□□□ -0.75
CPSF4-202ENST00000412686 ITGB4P16144 1822 aa10.35□□□□□ -0.75
CPSF4-202ENST00000412686 RREB1Q92766 1687 aa10.35□□□□□ -0.75
CPSF4-202ENST00000412686 U2AF1L5P0DN76 240 aaPredicted RBP10.35□□□□□ -0.75
CPSF4-202ENST00000412686 PHKG2P15735 406 aa10.35□□□□□ -0.75
CPSF4-202ENST00000412686 BAG6P46379 1132 aa10.35□□□□□ -0.75
CPSF4-202ENST00000412686 PRIM1P49642 420 aaKnown RBP10.35□□□□□ -0.75
CPSF4-202ENST00000412686 U2AF1Q01081 240 aaKnown RBP eCLIP10.35□□□□□ -0.75
CPSF4-202ENST00000412686 SYTL4Q96C24 671 aaPredicted RBP10.35□□□□□ -0.75
CPSF4-202ENST00000412686 BCL11BQ9C0K0 894 aaPredicted RBP10.35□□□□□ -0.75
CPSF4-202ENST00000412686 NUP188Q5SRE5 1749 aa10.35□□□□□ -0.75
CPSF4-202ENST00000412686 VIRMAQ69YN4 1812 aaKnown RBP10.35□□□□□ -0.75
CPSF4-202ENST00000412686 KDM6AO15550 1401 aaPredicted RBP10.34□□□□□ -0.75
CPSF4-202ENST00000412686 PRKAR2BP31323 418 aa10.34□□□□□ -0.75
CPSF4-202ENST00000412686 CCDC184Q52MB2 194 aa10.34□□□□□ -0.75
CPSF4-202ENST00000412686 PLEKHO1Q53GL0 409 aaPredicted RBP10.34□□□□□ -0.75
CPSF4-202ENST00000412686 ZNF530Q6P9A1 599 aaPredicted RBP10.34□□□□□ -0.75
CPSF4-202ENST00000412686 RSPH6AQ9H0K4 717 aa10.34□□□□□ -0.75
CPSF4-202ENST00000412686 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.34□□□□□ -0.75
CPSF4-202ENST00000412686 NKX1-1Q15270 411 aaPredicted RBP10.33□□□□□ -0.76
CPSF4-202ENST00000412686 MTHFSDQ2M296 383 aaKnown RBP10.33□□□□□ -0.76
CPSF4-202ENST00000412686 IFNL2Q8IZJ0 200 aa10.33□□□□□ -0.76
CPSF4-202ENST00000412686 PHACTR3Q96KR7 559 aa10.33□□□□□ -0.76
CPSF4-202ENST00000412686 CAMKK2Q96RR4 588 aa10.33□□□□□ -0.76
CPSF4-202ENST00000412686 NUDCQ9Y266 331 aa10.33□□□□□ -0.76
CPSF4-202ENST00000412686 RGPD3A6NKT7 1758 aaPredicted RBP10.33□□□□□ -0.76
CPSF4-202ENST00000412686 RGPD4Q7Z3J3 1758 aa10.33□□□□□ -0.76
CPSF4-202ENST00000412686 SCN11AQ9UI33 1791 aa10.32□□□□□ -0.76
CPSF4-202ENST00000412686 PLEKHG2Q9H7P9 1386 aa10.32□□□□□ -0.76
CPSF4-202ENST00000412686 AMOTQ4VCS5 1084 aa10.32□□□□□ -0.76
CPSF4-202ENST00000412686 MPRIPQ6WCQ1 1025 aa10.32□□□□□ -0.76
CPSF4-202ENST00000412686 LY75O60449 1722 aa10.31□□□□□ -0.76
CPSF4-202ENST00000412686 POLA2Q14181 598 aa10.31□□□□□ -0.76
CPSF4-202ENST00000412686 PROM2Q8N271 834 aa10.31□□□□□ -0.76
CPSF4-202ENST00000412686 PLSCR1O15162 318 aa10.3□□□□□ -0.76
CPSF4-202ENST00000412686 ANP32CO43423 234 aa10.3□□□□□ -0.76
CPSF4-202ENST00000412686 KCNQ4P56696 695 aa10.3□□□□□ -0.76
CPSF4-202ENST00000412686 C1orf141Q5JVX7 400 aa10.3□□□□□ -0.76
CPSF4-202ENST00000412686 LGR6Q9HBX8 967 aa10.3□□□□□ -0.76
CPSF4-202ENST00000412686 ADAMTS7Q9UKP4 1686 aa10.3□□□□□ -0.76
CPSF4-202ENST00000412686 DLG5Q8TDM6 1919 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms