RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 PRR36Q9H6K5 1346 aa17.2■□□□□ 0.34
SCAF4-202ENST00000399804 PPRC1Q5VV67 1664 aaKnown RBP17.2■□□□□ 0.34
SCAF4-202ENST00000399804 MRPL50Q8N5N7 158 aaKnown RBP17.2■□□□□ 0.34
SCAF4-202ENST00000399804 DIP2CQ9Y2E4 1556 aa17.19■□□□□ 0.34
SCAF4-202ENST00000399804 SRGAP3O43295 1099 aa17.19■□□□□ 0.34
SCAF4-202ENST00000399804 ARHGAP45Q92619 1136 aa17.19■□□□□ 0.34
SCAF4-202ENST00000399804 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.19■□□□□ 0.34
SCAF4-202ENST00000399804 ADGRB3O60242 1522 aa17.19■□□□□ 0.34
SCAF4-202ENST00000399804 ANO8Q9HCE9 1232 aaPredicted RBP17.19■□□□□ 0.34
SCAF4-202ENST00000399804 NUTM2BA6NNL0 878 aaPredicted RBP17.19■□□□□ 0.34
SCAF4-202ENST00000399804 NUTM2EB1AL46 878 aaPredicted RBP17.19■□□□□ 0.34
SCAF4-202ENST00000399804 NUTM2AQ8IVF1 878 aaPredicted RBP17.19■□□□□ 0.34
SCAF4-202ENST00000399804 RIMBP3CA6NJZ7 1639 aa17.19■□□□□ 0.34
SCAF4-202ENST00000399804 RIMBP3BA6NNM3 1639 aa17.19■□□□□ 0.34
SCAF4-202ENST00000399804 RIMBP3Q9UFD9 1639 aa17.19■□□□□ 0.34
SCAF4-202ENST00000399804 LRRCC1Q9C099 1032 aa17.19■□□□□ 0.34
SCAF4-202ENST00000399804 NPHP3Q7Z494 1330 aa17.19■□□□□ 0.34
SCAF4-202ENST00000399804 MSH6P52701 1360 aa17.18■□□□□ 0.34
SCAF4-202ENST00000399804 PTCD1O75127 700 aaKnown RBP17.18■□□□□ 0.34
SCAF4-202ENST00000399804 ANXA1P04083 346 aa17.18■□□□□ 0.34
SCAF4-202ENST00000399804 PTPRCP08575 1304 aa17.17■□□□□ 0.34
SCAF4-202ENST00000399804 IL1RAPL2Q9NP60 686 aa17.17■□□□□ 0.34
SCAF4-202ENST00000399804 IP6K1Q92551 441 aa17.17■□□□□ 0.34
SCAF4-202ENST00000399804 ZNF521Q96K83 1311 aa17.17■□□□□ 0.34
SCAF4-202ENST00000399804 RUFY2Q8WXA3 655 aa17.17■□□□□ 0.34
SCAF4-202ENST00000399804 ERC2O15083 957 aa17.16■□□□□ 0.34
SCAF4-202ENST00000399804 SMARCA5O60264 1052 aaPredicted RBP17.16■□□□□ 0.34
SCAF4-202ENST00000399804 FOXD4L5Q5VV16 416 aaPredicted RBP17.16■□□□□ 0.34
SCAF4-202ENST00000399804 FOXD4L4Q8WXT5 416 aaPredicted RBP17.16■□□□□ 0.34
SCAF4-202ENST00000399804 ABCA6Q8N139 1617 aa17.15■□□□□ 0.34
SCAF4-202ENST00000399804 PIP4K2BP78356 416 aa17.15■□□□□ 0.34
SCAF4-202ENST00000399804 TRIM44Q96DX7 344 aaPredicted RBP17.15■□□□□ 0.34
SCAF4-202ENST00000399804 NEUROD6Q96NK8 337 aa17.15■□□□□ 0.34
SCAF4-202ENST00000399804 SBNO1A3KN83 1393 aa17.15■□□□□ 0.34
SCAF4-202ENST00000399804 PLEKHF1Q96S99 279 aa17.14■□□□□ 0.33
SCAF4-202ENST00000399804 SIL1Q9H173 461 aa17.14■□□□□ 0.33
SCAF4-202ENST00000399804 DBF4Q9UBU7 674 aaPredicted RBP17.14■□□□□ 0.33
SCAF4-202ENST00000399804 MEIS3Q99687 375 aa17.14■□□□□ 0.33
SCAF4-202ENST00000399804 NLRP1Q9C000 1473 aa17.13■□□□□ 0.33
SCAF4-202ENST00000399804 HTATSF1O43719 755 aaKnown RBP17.13■□□□□ 0.33
SCAF4-202ENST00000399804 TRMT2AQ8IZ69 625 aaKnown RBP17.13■□□□□ 0.33
SCAF4-202ENST00000399804 DNAAF4Q8WXU2 420 aa17.13■□□□□ 0.33
SCAF4-202ENST00000399804 HDAC1Q13547 482 aaPredicted RBP17.13■□□□□ 0.33
SCAF4-202ENST00000399804 IFNL2Q8IZJ0 200 aa17.13■□□□□ 0.33
SCAF4-202ENST00000399804 LRRFIP2Q9Y608 721 aaKnown RBP17.13■□□□□ 0.33
SCAF4-202ENST00000399804 PI4KAP2A4QPH2 592 aa17.12■□□□□ 0.33
SCAF4-202ENST00000399804 NCBP3Q53F19 620 aaKnown RBP17.12■□□□□ 0.33
SCAF4-202ENST00000399804 PI4KAP1Q8N8J0 262 aa17.12■□□□□ 0.33
SCAF4-202ENST00000399804 GOLGA6L4A6NEF3 574 aa17.12■□□□□ 0.33
SCAF4-202ENST00000399804 CHMP5Q9NZZ3 219 aa17.12■□□□□ 0.33
SCAF4-202ENST00000399804 FAM135BQ49AJ0 1406 aa17.11■□□□□ 0.33
SCAF4-202ENST00000399804 DDX17Q92841 729 aaKnown RBP17.11■□□□□ 0.33
SCAF4-202ENST00000399804 ZBTB40Q9NUA8 1239 aa17.11■□□□□ 0.33
SCAF4-202ENST00000399804 GLI2P10070 1586 aa17.11■□□□□ 0.33
SCAF4-202ENST00000399804 AKAP4Q5JQC9 854 aa17.11■□□□□ 0.33
SCAF4-202ENST00000399804 CHL1O00533 1208 aa17.1■□□□□ 0.33
SCAF4-202ENST00000399804 ATP7BP35670 1465 aa17.1■□□□□ 0.33
SCAF4-202ENST00000399804 ZKSCAN1P17029 563 aaPredicted RBP17.1■□□□□ 0.33
SCAF4-202ENST00000399804 SLC39A6Q13433 755 aa17.1■□□□□ 0.33
SCAF4-202ENST00000399804 CNTROBQ8N137 903 aa17.1■□□□□ 0.33
SCAF4-202ENST00000399804 ALKQ9UM73 1620 aa17.1■□□□□ 0.33
SCAF4-202ENST00000399804 FAM177BA6PVY3 158 aa17.1■□□□□ 0.33
SCAF4-202ENST00000399804 ADAMTS2O95450 1211 aa17.1■□□□□ 0.33
SCAF4-202ENST00000399804 NFKBIBQ15653 356 aa17.1■□□□□ 0.33
SCAF4-202ENST00000399804 CAMSAP1Q5T5Y3 1602 aa17.09■□□□□ 0.33
SCAF4-202ENST00000399804 MAP4K4O95819 1239 aaPredicted RBP17.09■□□□□ 0.33
SCAF4-202ENST00000399804 HSP90B1P14625 803 aaKnown RBP17.09■□□□□ 0.33
SCAF4-202ENST00000399804 CHPF2Q9P2E5 772 aa17.09■□□□□ 0.33
SCAF4-202ENST00000399804 NBPF6Q5VWK0 638 aa17.08■□□□□ 0.33
SCAF4-202ENST00000399804 ERC1Q8IUD2 1116 aa17.08■□□□□ 0.33
SCAF4-202ENST00000399804 NBPF4Q96M43 638 aa17.08■□□□□ 0.33
SCAF4-202ENST00000399804 FRAT2O75474 233 aaPredicted RBP17.08■□□□□ 0.32
SCAF4-202ENST00000399804 FOXD4L6Q3SYB3 417 aaPredicted RBP17.08■□□□□ 0.32
SCAF4-202ENST00000399804 LARP1Q6PKG0 1096 aaKnown RBP17.08■□□□□ 0.32
SCAF4-202ENST00000399804 FOXD4L3Q6VB84 417 aaPredicted RBP17.08■□□□□ 0.32
SCAF4-202ENST00000399804 MEX3CQ5U5Q3 659 aaKnown RBP17.08■□□□□ 0.32
SCAF4-202ENST00000399804 KIF6Q6ZMV9 814 aa17.07■□□□□ 0.32
SCAF4-202ENST00000399804 NUTM1Q86Y26 1132 aa17.07■□□□□ 0.32
SCAF4-202ENST00000399804 AATKQ6ZMQ8 1374 aa17.07■□□□□ 0.32
SCAF4-202ENST00000399804 MAP3K5Q99683 1374 aa17.07■□□□□ 0.32
SCAF4-202ENST00000399804 PLCB2Q00722 1185 aa17.07■□□□□ 0.32
SCAF4-202ENST00000399804 HYPKQ9NX55 129 aa17.07■□□□□ 0.32
SCAF4-202ENST00000399804 FMNL2Q96PY5 1086 aa17.06■□□□□ 0.32
SCAF4-202ENST00000399804 FSD1Q9BTV5 496 aa17.06■□□□□ 0.32
SCAF4-202ENST00000399804 NEK4P51957 841 aa17.06■□□□□ 0.32
SCAF4-202ENST00000399804 MYD88Q99836 296 aa17.06■□□□□ 0.32
SCAF4-202ENST00000399804 MAP3K2Q9Y2U5 619 aa17.06■□□□□ 0.32
SCAF4-202ENST00000399804 PIK3R4Q99570 1358 aa17.06■□□□□ 0.32
SCAF4-202ENST00000399804 NUCB1Q02818 461 aa17.06■□□□□ 0.32
SCAF4-202ENST00000399804 G2E3Q7L622 706 aa17.06■□□□□ 0.32
SCAF4-202ENST00000399804 TMOD3Q9NYL9 352 aa17.06■□□□□ 0.32
SCAF4-202ENST00000399804 USP6P35125 1406 aa17.05■□□□□ 0.32
SCAF4-202ENST00000399804 SETBP1Q9Y6X0 1596 aa17.05■□□□□ 0.32
SCAF4-202ENST00000399804 L1TD1Q5T7N2 865 aaKnown RBP17.05■□□□□ 0.32
SCAF4-202ENST00000399804 ZBTB7BO15156 539 aaPredicted RBP17.05■□□□□ 0.32
SCAF4-202ENST00000399804 ZRSR1Q15695 479 aaKnown RBP17.05■□□□□ 0.32
SCAF4-202ENST00000399804 AACSQ86V21 672 aa17.05■□□□□ 0.32
SCAF4-202ENST00000399804 LGR6Q9HBX8 967 aa17.05■□□□□ 0.32
SCAF4-202ENST00000399804 PTMSP20962 102 aa17.04■□□□□ 0.32
SCAF4-202ENST00000399804 KIF1BPQ96EK5 621 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms