RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 KRT28Q7Z3Y7 464 aa14.02□□□□□ -0.16
TCOF1-203ENST00000394269 SSH2Q76I76 1423 aa14.02□□□□□ -0.16
TCOF1-203ENST00000394269 GCP02774 474 aa14.02□□□□□ -0.17
TCOF1-203ENST00000394269 ITSN1Q15811 1721 aa14.02□□□□□ -0.17
TCOF1-203ENST00000394269 G2E3Q7L622 706 aa14.02□□□□□ -0.17
TCOF1-203ENST00000394269 CABLES1Q8TDN4 633 aa14.02□□□□□ -0.17
TCOF1-203ENST00000394269 MFAP1P55081 439 aaKnown RBP14.01□□□□□ -0.17
TCOF1-203ENST00000394269 KNDC1Q76NI1 1749 aa14.01□□□□□ -0.17
TCOF1-203ENST00000394269 NPHP4O75161 1426 aaPredicted RBP14.01□□□□□ -0.17
TCOF1-203ENST00000394269 DDRGK1Q96HY6 314 aa14.01□□□□□ -0.17
TCOF1-203ENST00000394269 UPF2Q9HAU5 1272 aaKnown RBP14.01□□□□□ -0.17
TCOF1-203ENST00000394269 RGPD8O14715 1765 aaPredicted RBP14.01□□□□□ -0.17
TCOF1-203ENST00000394269 IL17REQ8NFR9 667 aa14□□□□□ -0.17
TCOF1-203ENST00000394269 STK31Q9BXU1 1019 aa14□□□□□ -0.17
TCOF1-203ENST00000394269 IGSF1Q8N6C5 1336 aa14□□□□□ -0.17
TCOF1-203ENST00000394269 PIK3R4Q99570 1358 aa14□□□□□ -0.17
TCOF1-203ENST00000394269 A0A0G2JS52 829 aa14□□□□□ -0.17
TCOF1-203ENST00000394269 MPRIPQ6WCQ1 1025 aa14□□□□□ -0.17
TCOF1-203ENST00000394269 HDAC1Q13547 482 aaPredicted RBP13.99□□□□□ -0.17
TCOF1-203ENST00000394269 LGR6Q9HBX8 967 aa13.99□□□□□ -0.17
TCOF1-203ENST00000394269 FKBP5Q13451 457 aaPredicted RBP13.99□□□□□ -0.17
TCOF1-203ENST00000394269 RTL5Q5HYW3 569 aaPredicted RBP13.99□□□□□ -0.17
TCOF1-203ENST00000394269 SPRYD3Q8NCJ5 442 aa13.99□□□□□ -0.17
TCOF1-203ENST00000394269 IP6K1Q92551 441 aa13.99□□□□□ -0.17
TCOF1-203ENST00000394269 MON2Q7Z3U7 1717 aa13.99□□□□□ -0.17
TCOF1-203ENST00000394269 ARHGAP45Q92619 1136 aa13.99□□□□□ -0.17
TCOF1-203ENST00000394269 HAP1P54257 671 aaPredicted RBP13.98□□□□□ -0.17
TCOF1-203ENST00000394269 C19orf44Q9H6X5 657 aa13.98□□□□□ -0.17
TCOF1-203ENST00000394269 KDM4FA0A1W2PPD8 638 aa13.98□□□□□ -0.17
TCOF1-203ENST00000394269 KCNH5Q8NCM2 988 aa13.98□□□□□ -0.17
TCOF1-203ENST00000394269 CSB-PGBD3P0DP91 1061 aa13.97□□□□□ -0.17
TCOF1-203ENST00000394269 ZNF530Q6P9A1 599 aaPredicted RBP13.97□□□□□ -0.17
TCOF1-203ENST00000394269 CHD1LQ86WJ1 897 aa13.97□□□□□ -0.17
TCOF1-203ENST00000394269 ARHGEF10O15013 1369 aa13.97□□□□□ -0.17
TCOF1-203ENST00000394269 NLRP2Q9NX02 1062 aa13.97□□□□□ -0.17
TCOF1-203ENST00000394269 MEIS3Q99687 375 aa13.97□□□□□ -0.17
TCOF1-203ENST00000394269 CHMP4BQ9H444 224 aaKnown RBP13.97□□□□□ -0.17
TCOF1-203ENST00000394269 TEFQ10587 303 aa13.96□□□□□ -0.17
TCOF1-203ENST00000394269 SIRT2Q8IXJ6 389 aa13.96□□□□□ -0.17
TCOF1-203ENST00000394269 SMC5Q8IY18 1101 aa13.96□□□□□ -0.17
TCOF1-203ENST00000394269 AXIN2Q9Y2T1 843 aa13.96□□□□□ -0.17
TCOF1-203ENST00000394269 ANKARQ7Z5J8 1434 aa13.96□□□□□ -0.17
TCOF1-203ENST00000394269 ANXA1P04083 346 aa13.96□□□□□ -0.17
TCOF1-203ENST00000394269 TAF7Q15545 349 aaPredicted RBP13.96□□□□□ -0.17
TCOF1-203ENST00000394269 CHRNA2Q15822 529 aa13.96□□□□□ -0.17
TCOF1-203ENST00000394269 ANKRD24Q8TF21 1146 aa13.96□□□□□ -0.17
TCOF1-203ENST00000394269 AKAP12Q02952 1782 aa13.96□□□□□ -0.17
TCOF1-203ENST00000394269 KCNQ3O43525 872 aa13.95□□□□□ -0.18
TCOF1-203ENST00000394269 PEAK1Q9H792 1746 aa13.94□□□□□ -0.18
TCOF1-203ENST00000394269 ABCC4O15439 1325 aa13.94□□□□□ -0.18
TCOF1-203ENST00000394269 BRPF1P55201 1214 aaPredicted RBP13.94□□□□□ -0.18
TCOF1-203ENST00000394269 SLKQ9H2G2 1235 aaPredicted RBP13.94□□□□□ -0.18
TCOF1-203ENST00000394269 NUCB1Q02818 461 aa13.94□□□□□ -0.18
TCOF1-203ENST00000394269 C1orf141Q5JVX7 400 aa13.94□□□□□ -0.18
TCOF1-203ENST00000394269 HDGFL1Q5TGJ6 251 aa13.94□□□□□ -0.18
TCOF1-203ENST00000394269 ADGRL3Q9HAR2 1447 aa13.94□□□□□ -0.18
TCOF1-203ENST00000394269 SMARCA5O60264 1052 aaPredicted RBP13.93□□□□□ -0.18
TCOF1-203ENST00000394269 C16orf71Q8IYS4 520 aaPredicted RBP13.93□□□□□ -0.18
TCOF1-203ENST00000394269 CCDC30Q5VVM6 783 aa13.93□□□□□ -0.18
TCOF1-203ENST00000394269 TMEM94Q12767 1356 aa13.92□□□□□ -0.18
TCOF1-203ENST00000394269 CRB1P82279 1406 aa13.92□□□□□ -0.18
TCOF1-203ENST00000394269 FLIIQ13045 1269 aa13.92□□□□□ -0.18
TCOF1-203ENST00000394269 ARHGEF25Q86VW2 580 aa13.92□□□□□ -0.18
TCOF1-203ENST00000394269 PHAXQ9H814 394 aaKnown RBP13.92□□□□□ -0.18
TCOF1-203ENST00000394269 BTBD11A6QL63 1104 aa13.92□□□□□ -0.18
TCOF1-203ENST00000394269 PLEKHO1Q53GL0 409 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-203ENST00000394269 KDRP35968 1356 aa13.91□□□□□ -0.18
TCOF1-203ENST00000394269 MAP3K5Q99683 1374 aa13.91□□□□□ -0.18
TCOF1-203ENST00000394269 GCC1Q96CN9 775 aa13.91□□□□□ -0.18
TCOF1-203ENST00000394269 USP19O94966 1318 aa13.9□□□□□ -0.18
TCOF1-203ENST00000394269 INTS3Q68E01 1043 aaKnown RBP13.9□□□□□ -0.18
TCOF1-203ENST00000394269 MSH6P52701 1360 aa13.9□□□□□ -0.18
TCOF1-203ENST00000394269 TOPAZ1Q8N9V7 1692 aa13.89□□□□□ -0.19
TCOF1-203ENST00000394269 PIK3C2AO00443 1686 aa13.89□□□□□ -0.19
TCOF1-203ENST00000394269 OTUD7AQ8TE49 926 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-203ENST00000394269 XRN1Q8IZH2 1706 aaKnown RBP13.89□□□□□ -0.19
TCOF1-203ENST00000394269 RAPGEF4Q8WZA2 1011 aa13.89□□□□□ -0.19
TCOF1-203ENST00000394269 C22orf23Q9BZE7 217 aa13.89□□□□□ -0.19
TCOF1-203ENST00000394269 EXOC6BQ9Y2D4 811 aa13.89□□□□□ -0.19
TCOF1-203ENST00000394269 PTPRCP08575 1304 aa13.88□□□□□ -0.19
TCOF1-203ENST00000394269 DLG5Q8TDM6 1919 aa13.88□□□□□ -0.19
TCOF1-203ENST00000394269 KIAA0232Q92628 1395 aa13.88□□□□□ -0.19
TCOF1-203ENST00000394269 NRKQ7Z2Y5 1582 aa13.88□□□□□ -0.19
TCOF1-203ENST00000394269 HTATSF1O43719 755 aaKnown RBP13.88□□□□□ -0.19
TCOF1-203ENST00000394269 CEP85Q6P2H3 762 aa13.87□□□□□ -0.19
TCOF1-203ENST00000394269 AIMP1Q12904 312 aaKnown RBP13.87□□□□□ -0.19
TCOF1-203ENST00000394269 SLC39A6Q13433 755 aa13.87□□□□□ -0.19
TCOF1-203ENST00000394269 BECN1Q14457 450 aa13.87□□□□□ -0.19
TCOF1-203ENST00000394269 CHPF2Q9P2E5 772 aa13.87□□□□□ -0.19
TCOF1-203ENST00000394269 PRAMEF22A3QJZ6 481 aa13.87□□□□□ -0.19
TCOF1-203ENST00000394269 TSHZ3Q63HK5 1081 aa13.86□□□□□ -0.19
TCOF1-203ENST00000394269 CADPS2Q86UW7 1296 aa13.86□□□□□ -0.19
TCOF1-203ENST00000394269 CCT4P50991 539 aaKnown RBP13.86□□□□□ -0.19
TCOF1-203ENST00000394269 ANKRD44Q8N8A2 993 aa13.86□□□□□ -0.19
TCOF1-203ENST00000394269 USP35Q9P2H5 1018 aa13.86□□□□□ -0.19
TCOF1-203ENST00000394269 AKAP4Q5JQC9 854 aa13.85□□□□□ -0.19
TCOF1-203ENST00000394269 GNAI2P04899 355 aa13.85□□□□□ -0.19
TCOF1-203ENST00000394269 RPAP2Q8IXW5 612 aaPredicted RBP13.85□□□□□ -0.19
TCOF1-203ENST00000394269 TBC1D32Q96NH3 1257 aa13.85□□□□□ -0.19
TCOF1-203ENST00000394269 DCTPP1Q9H773 170 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms