RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 WWC1Q8IX03 1113 aa10.35□□□□□ -0.75
LIMS1-203ENST00000393310 RPGRQ92834 1020 aaKnown RBP10.35□□□□□ -0.75
LIMS1-203ENST00000393310 RNF181Q9P0P0 153 aa10.35□□□□□ -0.75
LIMS1-203ENST00000393310 POLR3AO14802 1390 aaPredicted RBP10.34□□□□□ -0.75
LIMS1-203ENST00000393310 EAPPQ56P03 285 aaPredicted RBP10.34□□□□□ -0.75
LIMS1-203ENST00000393310 HDAC5Q9UQL6 1122 aa10.34□□□□□ -0.75
LIMS1-203ENST00000393310 NWD1Q149M9 1564 aa10.34□□□□□ -0.75
LIMS1-203ENST00000393310 PHLPP1O60346 1717 aa10.34□□□□□ -0.75
LIMS1-203ENST00000393310 KIAA0232Q92628 1395 aa10.34□□□□□ -0.75
LIMS1-203ENST00000393310 SPATA31A1Q5TZJ5 1347 aa10.34□□□□□ -0.75
LIMS1-203ENST00000393310 NAP1L2Q9ULW6 460 aaPredicted RBP10.33□□□□□ -0.76
LIMS1-203ENST00000393310 EIF2AK4Q9P2K8 1649 aaKnown RBP10.33□□□□□ -0.76
LIMS1-203ENST00000393310 TOMM70O94826 608 aa10.33□□□□□ -0.76
LIMS1-203ENST00000393310 LMOD3Q0VAK6 560 aa10.33□□□□□ -0.76
LIMS1-203ENST00000393310 TCIRG1Q13488 830 aa10.33□□□□□ -0.76
LIMS1-203ENST00000393310 WWC3Q9ULE0 1092 aa10.33□□□□□ -0.76
LIMS1-203ENST00000393310 ARHGAP23Q9P227 1491 aa10.33□□□□□ -0.76
LIMS1-203ENST00000393310 YTHDC2Q9H6S0 1430 aaKnown RBP10.33□□□□□ -0.76
LIMS1-203ENST00000393310 U2SURPO15042 1029 aaKnown RBP10.33□□□□□ -0.76
LIMS1-203ENST00000393310 KIF22Q14807 665 aa10.33□□□□□ -0.76
LIMS1-203ENST00000393310 CC2D2BQ6DHV5 1058 aa10.33□□□□□ -0.76
LIMS1-203ENST00000393310 WDR17Q8IZU2 1322 aa10.33□□□□□ -0.76
LIMS1-203ENST00000393310 CTCFP49711 727 aaPredicted RBP10.33□□□□□ -0.76
LIMS1-203ENST00000393310 CALD1Q05682 793 aaKnown RBP10.33□□□□□ -0.76
LIMS1-203ENST00000393310 FSTL1Q12841 308 aa10.33□□□□□ -0.76
LIMS1-203ENST00000393310 DIEXFQ68CQ4 756 aaKnown RBP10.32□□□□□ -0.76
LIMS1-203ENST00000393310 LARP1Q6PKG0 1096 aaKnown RBP10.32□□□□□ -0.76
LIMS1-203ENST00000393310 SYT17Q9BSW7 474 aa10.32□□□□□ -0.76
LIMS1-203ENST00000393310 ST20-MTHFSA0A0A6YYL1 179 aa10.32□□□□□ -0.76
LIMS1-203ENST00000393310 MTHFSP49914 203 aa10.32□□□□□ -0.76
LIMS1-203ENST00000393310 BBXQ8WY36 941 aaPredicted RBP10.32□□□□□ -0.76
LIMS1-203ENST00000393310 ZNF530Q6P9A1 599 aaPredicted RBP10.32□□□□□ -0.76
LIMS1-203ENST00000393310 OS9Q13438 667 aaPredicted RBP10.31□□□□□ -0.76
LIMS1-203ENST00000393310 PLEKHG2Q9H7P9 1386 aa10.31□□□□□ -0.76
LIMS1-203ENST00000393310 MAP2K1Q02750 393 aaPredicted RBP10.31□□□□□ -0.76
LIMS1-203ENST00000393310 PTPN23Q9H3S7 1636 aa10.31□□□□□ -0.76
LIMS1-203ENST00000393310 NBPF15Q8N660 670 aa10.31□□□□□ -0.76
LIMS1-203ENST00000393310 ZNF219Q9P2Y4 722 aaPredicted RBP10.31□□□□□ -0.76
LIMS1-203ENST00000393310 CA12O43570 354 aa10.3□□□□□ -0.76
LIMS1-203ENST00000393310 KCNJ4P48050 445 aa10.3□□□□□ -0.76
LIMS1-203ENST00000393310 CNKSR2Q8WXI2 1034 aa10.3□□□□□ -0.76
LIMS1-203ENST00000393310 MROH1Q8NDA8 1641 aa10.3□□□□□ -0.76
LIMS1-203ENST00000393310 GAS2L2Q8NHY3 880 aa10.3□□□□□ -0.76
LIMS1-203ENST00000393310 H7C1D1 291 aa10.29□□□□□ -0.76
LIMS1-203ENST00000393310 TGFB2P61812 414 aa10.29□□□□□ -0.76
LIMS1-203ENST00000393310 SETDB2Q96T68 719 aa10.29□□□□□ -0.76
LIMS1-203ENST00000393310 TMOD2Q9NZR1 351 aa10.29□□□□□ -0.76
LIMS1-203ENST00000393310 MST1RQ04912 1400 aa10.29□□□□□ -0.76
LIMS1-203ENST00000393310 FAM182BQ5T319 152 aa10.29□□□□□ -0.76
LIMS1-203ENST00000393310 PNMA8AQ86V59 439 aaPredicted RBP10.29□□□□□ -0.76
LIMS1-203ENST00000393310 TMEM106CQ9BVX2 250 aa10.29□□□□□ -0.76
LIMS1-203ENST00000393310 NYXQ9GZU5 481 aa10.29□□□□□ -0.76
LIMS1-203ENST00000393310 PLEKHG3A1L390 1219 aa10.29□□□□□ -0.76
LIMS1-203ENST00000393310 PRIM1P49642 420 aaKnown RBP10.28□□□□□ -0.76
LIMS1-203ENST00000393310 PNISRQ8TF01 805 aaKnown RBP10.28□□□□□ -0.76
LIMS1-203ENST00000393310 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.28□□□□□ -0.76
LIMS1-203ENST00000393310 ADGRL2O95490 1459 aa10.28□□□□□ -0.76
LIMS1-203ENST00000393310 MAP3K5Q99683 1374 aa10.28□□□□□ -0.76
LIMS1-203ENST00000393310 PPIP5K1Q6PFW1 1433 aa10.28□□□□□ -0.76
LIMS1-203ENST00000393310 ALDH1B1P30837 517 aa10.28□□□□□ -0.76
LIMS1-203ENST00000393310 AAMPQ13685 434 aa10.28□□□□□ -0.76
LIMS1-203ENST00000393310 MSL1Q68DK7 614 aa10.28□□□□□ -0.76
LIMS1-203ENST00000393310 ZNF784Q8NCA9 323 aaPredicted RBP10.28□□□□□ -0.76
LIMS1-203ENST00000393310 ADGRF5Q8IZF2 1346 aa10.28□□□□□ -0.76
LIMS1-203ENST00000393310 WDR43Q15061 677 aaKnown RBP eCLIP10.28□□□□□ -0.76
LIMS1-203ENST00000393310 TSHZ2Q9NRE2 1034 aa10.28□□□□□ -0.76
LIMS1-203ENST00000393310 ATRNO75882 1429 aa10.27□□□□□ -0.76
LIMS1-203ENST00000393310 FRAT2O75474 233 aaPredicted RBP10.27□□□□□ -0.76
LIMS1-203ENST00000393310 SSFA2P28290 1259 aa10.27□□□□□ -0.76
LIMS1-203ENST00000393310 EYA3Q99504 573 aa10.27□□□□□ -0.76
LIMS1-203ENST00000393310 RGS17Q9UGC6 210 aaPredicted RBP10.27□□□□□ -0.76
LIMS1-203ENST00000393310 ASXL1Q8IXJ9 1541 aa10.27□□□□□ -0.77
LIMS1-203ENST00000393310 CCDC85CA6NKD9 419 aa10.27□□□□□ -0.77
LIMS1-203ENST00000393310 DNTTIP2Q5QJE6 756 aaKnown RBP10.27□□□□□ -0.77
LIMS1-203ENST00000393310 VWDEQ8N2E2 1590 aa10.27□□□□□ -0.77
LIMS1-203ENST00000393310 INO80Q9ULG1 1556 aaPredicted RBP10.27□□□□□ -0.77
LIMS1-203ENST00000393310 RGS12O14924 1447 aa10.27□□□□□ -0.77
LIMS1-203ENST00000393310 CRB1P82279 1406 aa10.27□□□□□ -0.77
LIMS1-203ENST00000393310 KAT6BQ8WYB5 2073 aa10.27□□□□□ -0.77
LIMS1-203ENST00000393310 HSP90AB3PQ58FF7 597 aa10.27□□□□□ -0.77
LIMS1-203ENST00000393310 NIM1KQ8IY84 436 aa10.27□□□□□ -0.77
LIMS1-203ENST00000393310 TPTE2Q6XPS3 522 aa10.26□□□□□ -0.77
LIMS1-203ENST00000393310 TTLL6Q8N841 843 aa10.26□□□□□ -0.77
LIMS1-203ENST00000393310 TTC21BQ7Z4L5 1316 aa10.26□□□□□ -0.77
LIMS1-203ENST00000393310 ZNF592Q92610 1267 aa10.26□□□□□ -0.77
LIMS1-203ENST00000393310 METP08581 1390 aa10.26□□□□□ -0.77
LIMS1-203ENST00000393310 MAST1Q9Y2H9 1570 aa10.26□□□□□ -0.77
LIMS1-203ENST00000393310 IFFO2Q5TF58 517 aa10.26□□□□□ -0.77
LIMS1-203ENST00000393310 RBM46Q8TBY0 533 aaKnown RBP10.26□□□□□ -0.77
LIMS1-203ENST00000393310 ATP7BP35670 1465 aa10.26□□□□□ -0.77
LIMS1-203ENST00000393310 FBXW7Q969H0 707 aa10.26□□□□□ -0.77
LIMS1-203ENST00000393310 KIDINS220Q9ULH0 1771 aa10.26□□□□□ -0.77
LIMS1-203ENST00000393310 MYO1BO43795 1136 aa10.25□□□□□ -0.77
LIMS1-203ENST00000393310 TRIM34Q9BYJ4 488 aa10.25□□□□□ -0.77
LIMS1-203ENST00000393310 CALRP27797 417 aaKnown RBP10.25□□□□□ -0.77
LIMS1-203ENST00000393310 NBPF6Q5VWK0 638 aa10.25□□□□□ -0.77
LIMS1-203ENST00000393310 NBPF5PQ86XG9 351 aaPredicted RBP10.25□□□□□ -0.77
LIMS1-203ENST00000393310 HOOK2Q96ED9 719 aa10.25□□□□□ -0.77
LIMS1-203ENST00000393310 NBPF4Q96M43 638 aa10.25□□□□□ -0.77
LIMS1-203ENST00000393310 ZFYVE9O95405 1425 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms