RNA–Protein interactions for RNA: ENST00000392981.6

XRN1-202, Transcript of 5'-3' exoribonuclease 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene XRN1, Length 5,383 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-202ENST00000392981 NOD1Q9Y239 953 aa4.58□□□□□ -1.68
XRN1-202ENST00000392981 PRC1O43663 620 aa4.58□□□□□ -1.68
XRN1-202ENST00000392981 KCNB2Q92953 911 aa4.58□□□□□ -1.68
XRN1-202ENST00000392981 PNMA3Q9UL41 463 aa4.58□□□□□ -1.68
XRN1-202ENST00000392981 ADGRG1Q9Y653 693 aa4.58□□□□□ -1.68
XRN1-202ENST00000392981 TRIM50Q86XT4 487 aa4.58□□□□□ -1.68
XRN1-202ENST00000392981 SMAPO00193 183 aa4.57□□□□□ -1.68
XRN1-202ENST00000392981 KRT18P05783 430 aaKnown RBP4.57□□□□□ -1.68
XRN1-202ENST00000392981 FKBP4Q02790 459 aaKnown RBP eCLIP4.57□□□□□ -1.68
XRN1-202ENST00000392981 GRIPAP1Q4V328 841 aa4.57□□□□□ -1.68
XRN1-202ENST00000392981 ASB16Q96NS5 453 aa4.57□□□□□ -1.68
XRN1-202ENST00000392981 RPS6KC1Q96S38 1066 aa4.57□□□□□ -1.68
XRN1-202ENST00000392981 SMAD5Q99717 465 aaKnown RBP4.57□□□□□ -1.68
XRN1-202ENST00000392981 HLA-CQ95604 372 aa4.57□□□□□ -1.68
XRN1-202ENST00000392981 CARD14Q9BXL6 1004 aa4.57□□□□□ -1.68
XRN1-202ENST00000392981 KSR2Q6VAB6 950 aa4.57□□□□□ -1.68
XRN1-202ENST00000392981 SLF2Q8IX21 1173 aa4.57□□□□□ -1.68
XRN1-202ENST00000392981 PPM1FP49593 454 aaPredicted RBP4.57□□□□□ -1.68
XRN1-202ENST00000392981 SYMPKQ92797 1274 aaKnown RBP4.57□□□□□ -1.68
XRN1-202ENST00000392981 PMM1Q92871 262 aa4.57□□□□□ -1.68
XRN1-202ENST00000392981 GJD4Q96KN9 370 aaPredicted RBP4.57□□□□□ -1.68
XRN1-202ENST00000392981 BOLA1Q9Y3E2 137 aa4.57□□□□□ -1.68
XRN1-202ENST00000392981 SFI1A8K8P3 1242 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 C21orf2O43822 256 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 LZTS3O60299 673 aaPredicted RBP4.56□□□□□ -1.68
XRN1-202ENST00000392981 ICMTO60725 284 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 P4HBP07237 508 aaKnown RBP4.56□□□□□ -1.68
XRN1-202ENST00000392981 LONRF3Q496Y0 759 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 CNPY4Q8N129 248 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 ZHX3Q9H4I2 956 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 SLC52A1Q9NWF4 448 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 ZC3H4Q9UPT8 1303 aaKnown RBP4.56□□□□□ -1.68
XRN1-202ENST00000392981 ZRSR2Q15696 482 aaKnown RBP4.56□□□□□ -1.68
XRN1-202ENST00000392981 ZNF394Q53GI3 561 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 KANK4Q5T7N3 995 aaPredicted RBP4.56□□□□□ -1.68
XRN1-202ENST00000392981 MAGEB6P1A0A0J9YX57 407 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 CCDC194A0A1B0GVG4 234 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 HSP90AA1P07900 732 aaKnown RBP4.56□□□□□ -1.68
XRN1-202ENST00000392981 NR1H3Q13133 447 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 ANAPC16Q96DE5 110 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 FAM196BA6NMK8 535 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 TRIM37O94972 964 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 CT47B1P0C2W7 299 aaPredicted RBP4.56□□□□□ -1.68
XRN1-202ENST00000392981 SEC13P55735 322 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 FGD1P98174 961 aa4.56□□□□□ -1.68
XRN1-202ENST00000392981 IFRD2Q12894 506 aaPredicted RBP4.56□□□□□ -1.68
XRN1-202ENST00000392981 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP4.55□□□□□ -1.68
XRN1-202ENST00000392981 PHLDB3Q6NSJ2 640 aa4.55□□□□□ -1.68
XRN1-202ENST00000392981 TRIM63Q969Q1 353 aa4.55□□□□□ -1.68
XRN1-202ENST00000392981 FBXO45P0C2W1 286 aa4.55□□□□□ -1.68
XRN1-202ENST00000392981 EVA1CP58658 441 aa4.55□□□□□ -1.68
XRN1-202ENST00000392981 C21orf62-AS1Q17RA5 79 aa4.55□□□□□ -1.68
XRN1-202ENST00000392981 NUDT18Q6ZVK8 323 aa4.55□□□□□ -1.68
XRN1-202ENST00000392981 CUEDC1Q9NWM3 386 aaPredicted RBP4.55□□□□□ -1.68
XRN1-202ENST00000392981 ATF3P18847 181 aa4.55□□□□□ -1.68
XRN1-202ENST00000392981 JAZF1Q86VZ6 243 aa4.55□□□□□ -1.68
XRN1-202ENST00000392981 PLPP7Q8NBV4 271 aa4.55□□□□□ -1.68
XRN1-202ENST00000392981 TRIM35Q9UPQ4 493 aa4.55□□□□□ -1.68
XRN1-202ENST00000392981 FAN1Q9Y2M0 1017 aa4.55□□□□□ -1.68
XRN1-202ENST00000392981 CDC45O75419 566 aa4.55□□□□□ -1.68
XRN1-202ENST00000392981 LARGE2Q8N3Y3 721 aa4.55□□□□□ -1.68
XRN1-202ENST00000392981 PCDH12Q9NPG4 1184 aa4.55□□□□□ -1.68
XRN1-202ENST00000392981 C8orf34Q49A92 452 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 ZBTB33Q86T24 672 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 TMUB1Q9BVT8 246 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 CCDC189A1A4V9 331 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 PLCG2P16885 1265 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 FOXD4Q12950 439 aaPredicted RBP4.54□□□□□ -1.68
XRN1-202ENST00000392981 HDAC1Q13547 482 aaPredicted RBP4.54□□□□□ -1.68
XRN1-202ENST00000392981 CLP1Q92989 425 aaKnown RBP4.54□□□□□ -1.68
XRN1-202ENST00000392981 TGIF2Q9GZN2 237 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 F6X3S4 739 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 CACNB1Q02641 598 aaPredicted RBP4.54□□□□□ -1.68
XRN1-202ENST00000392981 CCDC102BQ68D86 513 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 FANCLQ9NW38 375 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 NLRP2Q9NX02 1062 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 DOLKQ9UPQ8 538 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 PHF14O94880 888 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 CD46P15529 392 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 GTF2IP78347 998 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 TSHZ1Q6ZSZ6 1077 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 C3orf67Q6ZVT6 689 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 HS2ST1Q7LGA3 356 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 DZIP3Q86Y13 1208 aaKnown RBP4.54□□□□□ -1.68
XRN1-202ENST00000392981 CERKQ8TCT0 537 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 NIF3L1Q9GZT8 377 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 PNMA6FA0A0J9YX94 578 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 SEC24BO95487 1268 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 CDCA7LQ96GN5 454 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 SGSM3Q96HU1 749 aa4.54□□□□□ -1.68
XRN1-202ENST00000392981 DNMT3AQ9Y6K1 912 aaPredicted RBP4.54□□□□□ -1.68
XRN1-202ENST00000392981 PPCSQ9HAB8 311 aa4.53□□□□□ -1.68
XRN1-202ENST00000392981 SLC4A8Q2Y0W8 1093 aa4.53□□□□□ -1.68
XRN1-202ENST00000392981 PRPF38BQ5VTL8 546 aaKnown RBP4.53□□□□□ -1.68
XRN1-202ENST00000392981 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.53□□□□□ -1.68
XRN1-202ENST00000392981 ZNF654Q8IZM8 581 aa4.53□□□□□ -1.68
XRN1-202ENST00000392981 NPDC1Q9NQX5 325 aaPredicted RBP4.53□□□□□ -1.68
XRN1-202ENST00000392981 DNAJB2P25686 324 aa4.53□□□□□ -1.68
XRN1-202ENST00000392981 RHBDL3P58872 404 aa4.53□□□□□ -1.68
XRN1-202ENST00000392981 DNM1Q05193 864 aaKnown RBP4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms