RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 DEF6Q9H4E7 631 aa23.34■■□□□ 1.33
SHANK1-203ENST00000391813 CAGE1Q8TC20 777 aa23.33■■□□□ 1.33
SHANK1-203ENST00000391813 CGNQ9P2M7 1197 aaKnown RBP23.33■■□□□ 1.33
SHANK1-203ENST00000391813 FMNL2Q96PY5 1086 aa23.33■■□□□ 1.33
SHANK1-203ENST00000391813 PRDM10Q9NQV6 1147 aa23.33■■□□□ 1.33
SHANK1-203ENST00000391813 ITSN2Q9NZM3 1697 aa23.33■■□□□ 1.33
SHANK1-203ENST00000391813 FAM135AQ9P2D6 1515 aa23.33■■□□□ 1.33
SHANK1-203ENST00000391813 UHRF1BP1LA0JNW5 1464 aa23.33■■□□□ 1.33
SHANK1-203ENST00000391813 PHF8Q9UPP1 1060 aa23.33■■□□□ 1.33
SHANK1-203ENST00000391813 PATL2C9JE40 543 aaKnown RBP23.33■■□□□ 1.32
SHANK1-203ENST00000391813 CEP57L1Q8IYX8 460 aa23.32■■□□□ 1.32
SHANK1-203ENST00000391813 PRKAR2BP31323 418 aa23.32■■□□□ 1.32
SHANK1-203ENST00000391813 AXDND1Q5T1B0 1012 aaPredicted RBP23.32■■□□□ 1.32
SHANK1-203ENST00000391813 NKTRP30414 1462 aaKnown RBP23.31■■□□□ 1.32
SHANK1-203ENST00000391813 MAP3K11Q16584 847 aa23.31■■□□□ 1.32
SHANK1-203ENST00000391813 RPAP2Q8IXW5 612 aaPredicted RBP23.31■■□□□ 1.32
SHANK1-203ENST00000391813 JMYQ8N9B5 988 aa23.31■■□□□ 1.32
SHANK1-203ENST00000391813 CCDC183Q5T5S1 534 aa23.31■■□□□ 1.32
SHANK1-203ENST00000391813 LARP1BQ659C4 914 aaKnown RBP23.31■■□□□ 1.32
SHANK1-203ENST00000391813 TMCO3Q6UWJ1 677 aa23.31■■□□□ 1.32
SHANK1-203ENST00000391813 DHX16O60231 1041 aaKnown RBP23.3■■□□□ 1.32
SHANK1-203ENST00000391813 CBFA2T2O43439 604 aa23.3■■□□□ 1.32
SHANK1-203ENST00000391813 STK38Q15208 465 aa23.3■■□□□ 1.32
SHANK1-203ENST00000391813 FSD1Q9BTV5 496 aa23.3■■□□□ 1.32
SHANK1-203ENST00000391813 PIP4K2AP48426 406 aaPredicted RBP23.29■■□□□ 1.32
SHANK1-203ENST00000391813 WAPLQ7Z5K2 1190 aa23.29■■□□□ 1.32
SHANK1-203ENST00000391813 SKAP1Q86WV1 359 aa23.29■■□□□ 1.32
SHANK1-203ENST00000391813 LRRCC1Q9C099 1032 aa23.29■■□□□ 1.32
SHANK1-203ENST00000391813 KIAA0754O94854 1291 aa23.29■■□□□ 1.32
SHANK1-203ENST00000391813 PTPN14Q15678 1187 aa23.29■■□□□ 1.32
SHANK1-203ENST00000391813 NFXL1Q6ZNB6 911 aa23.29■■□□□ 1.32
SHANK1-203ENST00000391813 CCT4P50991 539 aaKnown RBP23.29■■□□□ 1.32
SHANK1-203ENST00000391813 FOSBP53539 338 aa23.29■■□□□ 1.32
SHANK1-203ENST00000391813 NECTIN2Q92692 538 aa23.29■■□□□ 1.32
SHANK1-203ENST00000391813 CFAP45Q9UL16 551 aa23.29■■□□□ 1.32
SHANK1-203ENST00000391813 SERPINC1P01008 464 aa23.28■■□□□ 1.32
SHANK1-203ENST00000391813 KIF18AQ8NI77 898 aa23.28■■□□□ 1.32
SHANK1-203ENST00000391813 ERICH4A6NGS2 130 aa23.28■■□□□ 1.32
SHANK1-203ENST00000391813 CCDC30Q5VVM6 783 aa23.28■■□□□ 1.32
SHANK1-203ENST00000391813 C14orf93Q9H972 538 aaKnown RBP23.28■■□□□ 1.32
SHANK1-203ENST00000391813 WASLO00401 505 aaPredicted RBP23.28■■□□□ 1.32
SHANK1-203ENST00000391813 SSFA2P28290 1259 aa23.28■■□□□ 1.32
SHANK1-203ENST00000391813 RIC3Q7Z5B4 369 aa23.28■■□□□ 1.32
SHANK1-203ENST00000391813 PLEKHH1Q9ULM0 1364 aa23.27■■□□□ 1.32
SHANK1-203ENST00000391813 RARSP54136 660 aaKnown RBP23.27■■□□□ 1.32
SHANK1-203ENST00000391813 RRP12Q5JTH9 1297 aaKnown RBP23.27■■□□□ 1.32
SHANK1-203ENST00000391813 SULT6B1Q6IMI4 303 aa23.27■■□□□ 1.32
SHANK1-203ENST00000391813 ADGRF5Q8IZF2 1346 aa23.27■■□□□ 1.32
SHANK1-203ENST00000391813 ZNF530Q6P9A1 599 aaPredicted RBP23.27■■□□□ 1.32
SHANK1-203ENST00000391813 ERC1Q8IUD2 1116 aa23.27■■□□□ 1.32
SHANK1-203ENST00000391813 SPATA32Q96LK8 384 aa23.27■■□□□ 1.32
SHANK1-203ENST00000391813 FILIP1Q7Z7B0 1213 aa23.27■■□□□ 1.31
SHANK1-203ENST00000391813 UVSSAQ2YD98 709 aa23.26■■□□□ 1.31
SHANK1-203ENST00000391813 SYCP2Q9BX26 1530 aa23.26■■□□□ 1.31
SHANK1-203ENST00000391813 ERICH2A1L162 156 aa23.25■■□□□ 1.31
SHANK1-203ENST00000391813 NAP1L1P55209 391 aaKnown RBP23.25■■□□□ 1.31
SHANK1-203ENST00000391813 PDE4CQ08493 712 aa23.25■■□□□ 1.31
SHANK1-203ENST00000391813 HS1BP3Q53T59 392 aa23.25■■□□□ 1.31
SHANK1-203ENST00000391813 DUSP27Q5VZP5 1158 aa23.24■■□□□ 1.31
SHANK1-203ENST00000391813 NOL10Q9BSC4 688 aaKnown RBP23.24■■□□□ 1.31
SHANK1-203ENST00000391813 NOS1P29475 1434 aa23.24■■□□□ 1.31
SHANK1-203ENST00000391813 TRAPPC8Q9Y2L5 1435 aa23.24■■□□□ 1.31
SHANK1-203ENST00000391813 ABCA5Q8WWZ7 1642 aa23.24■■□□□ 1.31
SHANK1-203ENST00000391813 NEMFO60524 1076 aa23.24■■□□□ 1.31
SHANK1-203ENST00000391813 DACH1Q9UI36 760 aa23.24■■□□□ 1.31
SHANK1-203ENST00000391813 BAG4O95429 457 aaKnown RBP23.24■■□□□ 1.31
SHANK1-203ENST00000391813 TMEM57Q8N5G2 664 aa23.23■■□□□ 1.31
SHANK1-203ENST00000391813 GBP3Q9H0R5 595 aa23.23■■□□□ 1.31
SHANK1-203ENST00000391813 CEP170Q5SW79 1584 aa23.23■■□□□ 1.31
SHANK1-203ENST00000391813 ME1P48163 572 aa23.23■■□□□ 1.31
SHANK1-203ENST00000391813 CABP4P57796 275 aa23.23■■□□□ 1.31
SHANK1-203ENST00000391813 PPP4R3BQ5MIZ7 849 aa23.23■■□□□ 1.31
SHANK1-203ENST00000391813 ZHX1Q9UKY1 873 aaPredicted RBP23.23■■□□□ 1.31
SHANK1-203ENST00000391813 XBP1P17861 261 aa23.23■■□□□ 1.31
SHANK1-203ENST00000391813 MYO6Q9UM54 1294 aa23.22■■□□□ 1.31
SHANK1-203ENST00000391813 UPF3BQ9BZI7 483 aaKnown RBP23.22■■□□□ 1.31
SHANK1-203ENST00000391813 DISP1Q96F81 1524 aa23.22■■□□□ 1.31
SHANK1-203ENST00000391813 PPFIBP1Q86W92 1011 aa23.21■■□□□ 1.31
SHANK1-203ENST00000391813 PBRM1Q86U86 1689 aa23.21■■□□□ 1.31
SHANK1-203ENST00000391813 ZC3H6P61129 1189 aaKnown RBP23.21■■□□□ 1.31
SHANK1-203ENST00000391813 RBM42Q9BTD8 480 aaKnown RBP23.21■■□□□ 1.31
SHANK1-203ENST00000391813 DCAF8L1A6NGE4 600 aa23.21■■□□□ 1.31
SHANK1-203ENST00000391813 SMTNL1A8MU46 457 aa23.21■■□□□ 1.31
SHANK1-203ENST00000391813 TOM1O60784 492 aa23.2■■□□□ 1.31
SHANK1-203ENST00000391813 TTLL5Q6EMB2 1281 aa23.2■■□□□ 1.31
SHANK1-203ENST00000391813 USP25Q9UHP3 1055 aa23.2■■□□□ 1.31
SHANK1-203ENST00000391813 MSH6P52701 1360 aa23.2■■□□□ 1.3
SHANK1-203ENST00000391813 BMP2KLQ5H9B9 411 aa23.2■■□□□ 1.3
SHANK1-203ENST00000391813 SCAND2PQ9GZW5 306 aaPredicted RBP23.2■■□□□ 1.3
SHANK1-203ENST00000391813 BRMS1Q9HCU9 246 aa23.2■■□□□ 1.3
SHANK1-203ENST00000391813 BLOC1S2Q6QNY1 142 aa23.19■■□□□ 1.3
SHANK1-203ENST00000391813 DDX54Q8TDD1 881 aaKnown RBP23.19■■□□□ 1.3
SHANK1-203ENST00000391813 FOXO3O43524 673 aa23.19■■□□□ 1.3
SHANK1-203ENST00000391813 TNNT1P13805 278 aa23.19■■□□□ 1.3
SHANK1-203ENST00000391813 SFPQP23246 707 aaKnown RBP eCLIP23.19■■□□□ 1.3
SHANK1-203ENST00000391813 KIF6Q6ZMV9 814 aa23.19■■□□□ 1.3
SHANK1-203ENST00000391813 VPS37DQ86XT2 251 aa23.19■■□□□ 1.3
SHANK1-203ENST00000391813 CEBPZQ03701 1054 aaKnown RBP23.18■■□□□ 1.3
SHANK1-203ENST00000391813 PDRG1Q9NUG6 133 aa23.18■■□□□ 1.3
SHANK1-203ENST00000391813 FCHSD2O94868 740 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms