RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 TCP11L2Q8N4U5 519 aa20.19■□□□□ 0.82
CCDC40-202ENST00000374876 A0A0G2JS52 829 aa20.19■□□□□ 0.82
CCDC40-202ENST00000374876 KIF24Q5T7B8 1368 aa20.18■□□□□ 0.82
CCDC40-202ENST00000374876 TRMT2AQ8IZ69 625 aaKnown RBP20.18■□□□□ 0.82
CCDC40-202ENST00000374876 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.18■□□□□ 0.82
CCDC40-202ENST00000374876 SEPT12Q8IYM1 358 aa20.17■□□□□ 0.82
CCDC40-202ENST00000374876 CARD10Q9BWT7 1032 aa20.17■□□□□ 0.82
CCDC40-202ENST00000374876 E9PSI1 815 aa20.17■□□□□ 0.82
CCDC40-202ENST00000374876 ONECUT3O60422 494 aaPredicted RBP20.17■□□□□ 0.82
CCDC40-202ENST00000374876 RGS12O14924 1447 aa20.16■□□□□ 0.82
CCDC40-202ENST00000374876 NBPF6Q5VWK0 638 aa20.16■□□□□ 0.82
CCDC40-202ENST00000374876 ERICH6Q7L0X2 663 aa20.16■□□□□ 0.82
CCDC40-202ENST00000374876 NBPF4Q96M43 638 aa20.16■□□□□ 0.82
CCDC40-202ENST00000374876 C20orf194Q5TEA3 1177 aa20.15■□□□□ 0.82
CCDC40-202ENST00000374876 TCERG1O14776 1098 aaKnown RBP20.15■□□□□ 0.82
CCDC40-202ENST00000374876 USHBP1Q8N6Y0 703 aa20.15■□□□□ 0.82
CCDC40-202ENST00000374876 CFAP53Q96M91 514 aa20.15■□□□□ 0.82
CCDC40-202ENST00000374876 EIF4A2Q14240 407 aaKnown RBP20.14■□□□□ 0.81
CCDC40-202ENST00000374876 BARGINQ6ZT62 677 aa20.14■□□□□ 0.81
CCDC40-202ENST00000374876 THRAP3Q9Y2W1 955 aaKnown RBP20.14■□□□□ 0.81
CCDC40-202ENST00000374876 RGPD2P0DJD1 1756 aa20.14■□□□□ 0.81
CCDC40-202ENST00000374876 SPINK5Q9NQ38 1064 aaPredicted RBP20.14■□□□□ 0.81
CCDC40-202ENST00000374876 RUNDC1Q96C34 613 aa20.12■□□□□ 0.81
CCDC40-202ENST00000374876 CDK12Q9NYV4 1490 aaPredicted RBP20.12■□□□□ 0.81
CCDC40-202ENST00000374876 EYA1Q99502 592 aa20.11■□□□□ 0.81
CCDC40-202ENST00000374876 WWC1Q8IX03 1113 aa20.1■□□□□ 0.81
CCDC40-202ENST00000374876 FAM182BQ5T319 152 aa20.09■□□□□ 0.81
CCDC40-202ENST00000374876 IL13P35225 146 aa20.08■□□□□ 0.8
CCDC40-202ENST00000374876 ANP32AP39687 249 aaKnown RBP20.08■□□□□ 0.8
CCDC40-202ENST00000374876 IL2RBP14784 551 aa20.07■□□□□ 0.8
CCDC40-202ENST00000374876 BRWD3Q6RI45 1802 aa20.07■□□□□ 0.8
CCDC40-202ENST00000374876 MS4A1P11836 297 aa20.07■□□□□ 0.8
CCDC40-202ENST00000374876 FAM208AQ9UK61 1670 aaKnown RBP20.06■□□□□ 0.8
CCDC40-202ENST00000374876 THSD7AQ9UPZ6 1657 aa20.06■□□□□ 0.8
CCDC40-202ENST00000374876 DIAPH1O60610 1272 aaKnown RBP20.06■□□□□ 0.8
CCDC40-202ENST00000374876 NEUROD2Q15784 382 aa20.06■□□□□ 0.8
CCDC40-202ENST00000374876 KRT27Q7Z3Y8 459 aa20.06■□□□□ 0.8
CCDC40-202ENST00000374876 DDB1Q16531 1140 aa20.05■□□□□ 0.8
CCDC40-202ENST00000374876 DISP2A7MBM2 1401 aa20.05■□□□□ 0.8
CCDC40-202ENST00000374876 EXOC5O00471 708 aa20.04■□□□□ 0.8
CCDC40-202ENST00000374876 CDCA7Q9BWT1 371 aaPredicted RBP20.04■□□□□ 0.8
CCDC40-202ENST00000374876 RRP7AQ9Y3A4 280 aaKnown RBP20.04■□□□□ 0.8
CCDC40-202ENST00000374876 BCAR3O75815 825 aa20.03■□□□□ 0.8
CCDC40-202ENST00000374876 IGSF1Q8N6C5 1336 aa20.02■□□□□ 0.8
CCDC40-202ENST00000374876 CENPQQ7L2Z9 268 aaPredicted RBP20.02■□□□□ 0.8
CCDC40-202ENST00000374876 AEBP1Q8IUX7 1158 aa20.02■□□□□ 0.8
CCDC40-202ENST00000374876 RAPGEF4Q8WZA2 1011 aa20.02■□□□□ 0.8
CCDC40-202ENST00000374876 U2AF1L5P0DN76 240 aaPredicted RBP20.02■□□□□ 0.79
CCDC40-202ENST00000374876 PDE4AP27815 886 aa20.02■□□□□ 0.79
CCDC40-202ENST00000374876 U2AF1Q01081 240 aaKnown RBP eCLIP20.02■□□□□ 0.79
CCDC40-202ENST00000374876 WNK3Q9BYP7 1800 aa20.01■□□□□ 0.79
CCDC40-202ENST00000374876 COL3A1P02461 1466 aaPredicted RBP20.01■□□□□ 0.79
CCDC40-202ENST00000374876 KDM2BQ8NHM5 1336 aa20.01■□□□□ 0.79
CCDC40-202ENST00000374876 U2SURPO15042 1029 aaKnown RBP20.01■□□□□ 0.79
CCDC40-202ENST00000374876 SULT6B1Q6IMI4 303 aa20.01■□□□□ 0.79
CCDC40-202ENST00000374876 WDR63Q8IWG1 891 aa20.01■□□□□ 0.79
CCDC40-202ENST00000374876 MEGF6O75095 1541 aa20.01■□□□□ 0.79
CCDC40-202ENST00000374876 HMOX1P09601 288 aa20■□□□□ 0.79
CCDC40-202ENST00000374876 TATP17735 454 aaPredicted RBP20■□□□□ 0.79
CCDC40-202ENST00000374876 PARP4Q9UKK3 1724 aaKnown RBP20■□□□□ 0.79
CCDC40-202ENST00000374876 CCDC27Q2M243 656 aa20■□□□□ 0.79
CCDC40-202ENST00000374876 NOP58Q9Y2X3 529 aaKnown RBP20■□□□□ 0.79
CCDC40-202ENST00000374876 MARCH10Q8NA82 808 aaPredicted RBP19.99■□□□□ 0.79
CCDC40-202ENST00000374876 DDX54Q8TDD1 881 aaKnown RBP19.99■□□□□ 0.79
CCDC40-202ENST00000374876 EP400Q96L91 3159 aa19.99■□□□□ 0.79
CCDC40-202ENST00000374876 LRRC37A3O60309 1634 aa19.99■□□□□ 0.79
CCDC40-202ENST00000374876 ZCRB1Q8TBF4 217 aaKnown RBP19.98■□□□□ 0.79
CCDC40-202ENST00000374876 IPO9Q96P70 1041 aaKnown RBP19.98■□□□□ 0.79
CCDC40-202ENST00000374876 BACH2Q9BYV9 841 aa19.98■□□□□ 0.79
CCDC40-202ENST00000374876 NCAPD2Q15021 1401 aa19.98■□□□□ 0.79
CCDC40-202ENST00000374876 NCBP3Q53F19 620 aaKnown RBP19.98■□□□□ 0.79
CCDC40-202ENST00000374876 CANXP27824 592 aaKnown RBP19.97■□□□□ 0.79
CCDC40-202ENST00000374876 RGPD1P0DJD0 1748 aa19.96■□□□□ 0.79
CCDC40-202ENST00000374876 PDE3AQ14432 1141 aa19.96■□□□□ 0.79
CCDC40-202ENST00000374876 OVOS2A0A0G2JMS6 1433 aa19.95■□□□□ 0.78
CCDC40-202ENST00000374876 SKAP1Q86WV1 359 aa19.95■□□□□ 0.78
CCDC40-202ENST00000374876 TNS2Q63HR2 1409 aa19.94■□□□□ 0.78
CCDC40-202ENST00000374876 MYH16Q9H6N6 1097 aa19.93■□□□□ 0.78
CCDC40-202ENST00000374876 FAM196AQ6ZSG2 479 aa19.93■□□□□ 0.78
CCDC40-202ENST00000374876 KDRP35968 1356 aa19.93■□□□□ 0.78
CCDC40-202ENST00000374876 NPM2Q86SE8 214 aaKnown RBP19.92■□□□□ 0.78
CCDC40-202ENST00000374876 SOCS7O14512 581 aa19.92■□□□□ 0.78
CCDC40-202ENST00000374876 RARSP54136 660 aaKnown RBP19.92■□□□□ 0.78
CCDC40-202ENST00000374876 UPF1Q92900 1129 aaKnown RBP eCLIP19.92■□□□□ 0.78
CCDC40-202ENST00000374876 ZBTB47Q9UFB7 747 aaPredicted RBP19.91■□□□□ 0.78
CCDC40-202ENST00000374876 SPG7Q9UQ90 795 aa19.91■□□□□ 0.78
CCDC40-202ENST00000374876 CYP27B1O15528 508 aa19.9■□□□□ 0.78
CCDC40-202ENST00000374876 FRAT1Q92837 279 aaPredicted RBP19.9■□□□□ 0.78
CCDC40-202ENST00000374876 MAPK8IP3Q9UPT6 1336 aa19.9■□□□□ 0.78
CCDC40-202ENST00000374876 TRIM37O94972 964 aa19.9■□□□□ 0.78
CCDC40-202ENST00000374876 PLEKHO1Q53GL0 409 aaPredicted RBP19.89■□□□□ 0.77
CCDC40-202ENST00000374876 ACSBG1Q96GR2 724 aa19.89■□□□□ 0.77
CCDC40-202ENST00000374876 SHANK3Q9BYB0 1731 aa19.89■□□□□ 0.77
CCDC40-202ENST00000374876 PCDH11XQ9BZA7 1347 aa19.88■□□□□ 0.77
CCDC40-202ENST00000374876 PCDH11YQ9BZA8 1340 aa19.88■□□□□ 0.77
CCDC40-202ENST00000374876 PTF1AQ7RTS3 328 aa19.88■□□□□ 0.77
CCDC40-202ENST00000374876 PANK1Q8TE04 598 aa19.88■□□□□ 0.77
CCDC40-202ENST00000374876 PLEKHF1Q96S99 279 aa19.88■□□□□ 0.77
CCDC40-202ENST00000374876 PRKAR2BP31323 418 aa19.88■□□□□ 0.77
CCDC40-202ENST00000374876 RSPH6AQ9H0K4 717 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms