RNA–Protein interactions for RNA: ENST00000371820.3

COL5A1-202, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 2

Gene COL5A1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-202ENST00000371820 HOXC9P31274 260 aa14.09□□□□□ -0.15
COL5A1-202ENST00000371820 ZBTB7AO95365 584 aa14.08□□□□□ -0.16
COL5A1-202ENST00000371820 PTGER2P43116 358 aa14.08□□□□□ -0.16
COL5A1-202ENST00000371820 LTV1Q96GA3 475 aaPredicted RBP14.07□□□□□ -0.16
COL5A1-202ENST00000371820 CARD14Q9BXL6 1004 aa14.07□□□□□ -0.16
COL5A1-202ENST00000371820 FLT4P35916 1363 aa14.07□□□□□ -0.16
COL5A1-202ENST00000371820 SHANK3Q9BYB0 1731 aa14.07□□□□□ -0.16
COL5A1-202ENST00000371820 YY1P25490 414 aa14.06□□□□□ -0.16
COL5A1-202ENST00000371820 DOT1LQ8TEK3 1739 aa14.05□□□□□ -0.16
COL5A1-202ENST00000371820 ANKRD26Q9UPS8 1709 aa14.05□□□□□ -0.16
COL5A1-202ENST00000371820 RGPD2P0DJD1 1756 aa14.05□□□□□ -0.16
COL5A1-202ENST00000371820 RRS1Q15050 365 aaKnown RBP14.05□□□□□ -0.16
COL5A1-202ENST00000371820 MTFR1LQ9H019 292 aa14.05□□□□□ -0.16
COL5A1-202ENST00000371820 INSRP06213 1382 aa14.05□□□□□ -0.16
COL5A1-202ENST00000371820 DCAF8L1A6NGE4 600 aa14.04□□□□□ -0.16
COL5A1-202ENST00000371820 SGIP1Q9BQI5 828 aa14.04□□□□□ -0.16
COL5A1-202ENST00000371820 ATF5Q9Y2D1 282 aaPredicted RBP14.04□□□□□ -0.16
COL5A1-202ENST00000371820 NSD2O96028 1365 aa14.04□□□□□ -0.16
COL5A1-202ENST00000371820 MEGF6O75095 1541 aa14.04□□□□□ -0.16
COL5A1-202ENST00000371820 QSER1Q2KHR3 1735 aa14.04□□□□□ -0.16
COL5A1-202ENST00000371820 FBLN1P23142 703 aa14.03□□□□□ -0.16
COL5A1-202ENST00000371820 ZNF827Q17R98 1081 aa14.03□□□□□ -0.16
COL5A1-202ENST00000371820 KAT6BQ8WYB5 2073 aa14.02□□□□□ -0.16
COL5A1-202ENST00000371820 DDX10Q13206 875 aaKnown RBP14.02□□□□□ -0.17
COL5A1-202ENST00000371820 DDX54Q8TDD1 881 aaKnown RBP14.02□□□□□ -0.17
COL5A1-202ENST00000371820 LRRC4BQ9NT99 713 aa14.02□□□□□ -0.17
COL5A1-202ENST00000371820 LY75O60449 1722 aa14.01□□□□□ -0.17
COL5A1-202ENST00000371820 FHDC1Q9C0D6 1143 aaPredicted RBP14.01□□□□□ -0.17
COL5A1-202ENST00000371820 PANK3Q9H999 370 aa14.01□□□□□ -0.17
COL5A1-202ENST00000371820 SLC27A3Q5K4L6 730 aa14□□□□□ -0.17
COL5A1-202ENST00000371820 RAPGEF4Q8WZA2 1011 aa14□□□□□ -0.17
COL5A1-202ENST00000371820 TUBGCP6Q96RT7 1819 aa13.99□□□□□ -0.17
COL5A1-202ENST00000371820 MAP3K5Q99683 1374 aa13.99□□□□□ -0.17
COL5A1-202ENST00000371820 COL24A1Q17RW2 1714 aa13.99□□□□□ -0.17
COL5A1-202ENST00000371820 PPM1GO15355 546 aaPredicted RBP13.99□□□□□ -0.17
COL5A1-202ENST00000371820 HSP90AB2PQ58FF8 381 aa13.99□□□□□ -0.17
COL5A1-202ENST00000371820 ZCRB1Q8TBF4 217 aaKnown RBP13.99□□□□□ -0.17
COL5A1-202ENST00000371820 AKT1S1Q96B36 256 aa13.99□□□□□ -0.17
COL5A1-202ENST00000371820 SYT17Q9BSW7 474 aa13.99□□□□□ -0.17
COL5A1-202ENST00000371820 NEFLP07196 543 aa13.98□□□□□ -0.17
COL5A1-202ENST00000371820 TATP17735 454 aaPredicted RBP13.98□□□□□ -0.17
COL5A1-202ENST00000371820 NBPF6Q5VWK0 638 aa13.98□□□□□ -0.17
COL5A1-202ENST00000371820 NBPF4Q96M43 638 aa13.98□□□□□ -0.17
COL5A1-202ENST00000371820 KNSTRNQ9Y448 316 aa13.98□□□□□ -0.17
COL5A1-202ENST00000371820 EMILIN1Q9Y6C2 1016 aa13.98□□□□□ -0.17
COL5A1-202ENST00000371820 MAP2P11137 1827 aaKnown RBP13.98□□□□□ -0.17
COL5A1-202ENST00000371820 WASHC2AQ641Q2 1341 aa13.97□□□□□ -0.17
COL5A1-202ENST00000371820 PRIM1P49642 420 aaKnown RBP13.97□□□□□ -0.17
COL5A1-202ENST00000371820 SYTL4Q96C24 671 aaPredicted RBP13.97□□□□□ -0.17
COL5A1-202ENST00000371820 ARXQ96QS3 562 aa13.97□□□□□ -0.17
COL5A1-202ENST00000371820 SUPT16HQ9Y5B9 1047 aaKnown RBP13.97□□□□□ -0.17
COL5A1-202ENST00000371820 PNPLA7Q6ZV29 1317 aa13.96□□□□□ -0.17
COL5A1-202ENST00000371820 KIF7Q2M1P5 1343 aa13.95□□□□□ -0.18
COL5A1-202ENST00000371820 USHBP1Q8N6Y0 703 aa13.95□□□□□ -0.18
COL5A1-202ENST00000371820 SLC16A10Q8TF71 515 aa13.95□□□□□ -0.18
COL5A1-202ENST00000371820 POLKQ9UBT6 870 aa13.95□□□□□ -0.18
COL5A1-202ENST00000371820 PCDH11XQ9BZA7 1347 aa13.94□□□□□ -0.18
COL5A1-202ENST00000371820 PCDH11YQ9BZA8 1340 aa13.94□□□□□ -0.18
COL5A1-202ENST00000371820 KCNQ4P56696 695 aa13.94□□□□□ -0.18
COL5A1-202ENST00000371820 MORC1Q86VD1 984 aa13.94□□□□□ -0.18
COL5A1-202ENST00000371820 PKD1L3Q7Z443 1732 aa13.93□□□□□ -0.18
COL5A1-202ENST00000371820 NCAPD2Q15021 1401 aa13.93□□□□□ -0.18
COL5A1-202ENST00000371820 TNNT2P45379 298 aaPredicted RBP13.93□□□□□ -0.18
COL5A1-202ENST00000371820 PLEKHG2Q9H7P9 1386 aa13.93□□□□□ -0.18
COL5A1-202ENST00000371820 UTRNP46939 3433 aa13.93□□□□□ -0.18
COL5A1-202ENST00000371820 TOGARAM1Q9Y4F4 1720 aa13.93□□□□□ -0.18
COL5A1-202ENST00000371820 CHD4Q14839 1912 aa13.92□□□□□ -0.18
COL5A1-202ENST00000371820 C5P01031 1676 aa13.92□□□□□ -0.18
COL5A1-202ENST00000371820 TFCP2L1Q9NZI6 479 aa13.92□□□□□ -0.18
COL5A1-202ENST00000371820 CCNL1Q9UK58 526 aaPredicted RBP13.92□□□□□ -0.18
COL5A1-202ENST00000371820 HMGB2P26583 209 aaKnown RBP13.91□□□□□ -0.18
COL5A1-202ENST00000371820 POLD1P28340 1107 aa13.91□□□□□ -0.18
COL5A1-202ENST00000371820 ERICH6BQ5W0A0 696 aa13.91□□□□□ -0.18
COL5A1-202ENST00000371820 SPG7Q9UQ90 795 aa13.91□□□□□ -0.18
COL5A1-202ENST00000371820 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.9□□□□□ -0.18
COL5A1-202ENST00000371820 EIF4A2Q14240 407 aaKnown RBP13.89□□□□□ -0.19
COL5A1-202ENST00000371820 ZNF784Q8NCA9 323 aaPredicted RBP13.89□□□□□ -0.19
COL5A1-202ENST00000371820 EYA1Q99502 592 aa13.89□□□□□ -0.19
COL5A1-202ENST00000371820 TAF1LQ8IZX4 1826 aa13.89□□□□□ -0.19
COL5A1-202ENST00000371820 ITGB4P16144 1822 aa13.88□□□□□ -0.19
COL5A1-202ENST00000371820 PALLDQ8WX93 1383 aa13.88□□□□□ -0.19
COL5A1-202ENST00000371820 CYP27B1O15528 508 aa13.88□□□□□ -0.19
COL5A1-202ENST00000371820 AMER1Q5JTC6 1135 aaPredicted RBP13.88□□□□□ -0.19
COL5A1-202ENST00000371820 COL23A1Q86Y22 540 aaPredicted RBP13.87□□□□□ -0.19
COL5A1-202ENST00000371820 KLHL34Q8N239 644 aa13.87□□□□□ -0.19
COL5A1-202ENST00000371820 IGSF1Q8N6C5 1336 aa13.87□□□□□ -0.19
COL5A1-202ENST00000371820 NPC1L1Q9UHC9 1359 aa13.86□□□□□ -0.19
COL5A1-202ENST00000371820 C4BP0C0L5 1744 aa13.86□□□□□ -0.19
COL5A1-202ENST00000371820 GPR162Q16538 588 aa13.85□□□□□ -0.19
COL5A1-202ENST00000371820 MPRIPQ6WCQ1 1025 aa13.85□□□□□ -0.19
COL5A1-202ENST00000371820 NLGN2Q8NFZ4 835 aa13.85□□□□□ -0.19
COL5A1-202ENST00000371820 PER1O15534 1290 aaPredicted RBP13.84□□□□□ -0.19
COL5A1-202ENST00000371820 NKX1-1Q15270 411 aaPredicted RBP13.84□□□□□ -0.19
COL5A1-202ENST00000371820 IFNL2Q8IZJ0 200 aa13.84□□□□□ -0.19
COL5A1-202ENST00000371820 MSH5O43196 834 aa13.83□□□□□ -0.2
COL5A1-202ENST00000371820 HSP90AB1P08238 724 aaKnown RBP13.83□□□□□ -0.2
COL5A1-202ENST00000371820 AMOTQ4VCS5 1084 aa13.83□□□□□ -0.2
COL5A1-202ENST00000371820 SMARCC1Q92922 1105 aaPredicted RBP13.83□□□□□ -0.2
COL5A1-202ENST00000371820 UBR3Q6ZT12 1888 aa13.82□□□□□ -0.2
COL5A1-202ENST00000371820 PLEKHO1Q53GL0 409 aaPredicted RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms