RNA–Protein interactions for RNA: ENST00000368021.7

USF1-203, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,807 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-203ENST00000368021 SULT6B1Q6IMI4 303 aa15.77■□□□□ 0.11
USF1-203ENST00000368021 NWD2Q9ULI1 1742 aa15.77■□□□□ 0.11
USF1-203ENST00000368021 CSB-PGBD3P0DP91 1061 aa15.76■□□□□ 0.11
USF1-203ENST00000368021 NEFLP07196 543 aa15.75■□□□□ 0.11
USF1-203ENST00000368021 RIPK4P57078 832 aa15.75■□□□□ 0.11
USF1-203ENST00000368021 NFE2L2Q16236 605 aa15.75■□□□□ 0.11
USF1-203ENST00000368021 PHACTR3Q96KR7 559 aa15.75■□□□□ 0.11
USF1-203ENST00000368021 EYA1Q99502 592 aa15.75■□□□□ 0.11
USF1-203ENST00000368021 ABCC6O95255 1503 aa15.75■□□□□ 0.11
USF1-203ENST00000368021 SPATA31A5Q5VU36 1347 aa15.75■□□□□ 0.11
USF1-203ENST00000368021 RNF123Q5XPI4 1314 aa15.75■□□□□ 0.11
USF1-203ENST00000368021 SPATA31A7Q8IWB4 1347 aa15.75■□□□□ 0.11
USF1-203ENST00000368021 TOM1L2Q6ZVM7 507 aa15.75■□□□□ 0.11
USF1-203ENST00000368021 AEBP1Q8IUX7 1158 aa15.75■□□□□ 0.11
USF1-203ENST00000368021 LTV1Q96GA3 475 aaPredicted RBP15.75■□□□□ 0.11
USF1-203ENST00000368021 TRIM35Q9UPQ4 493 aa15.75■□□□□ 0.11
USF1-203ENST00000368021 RGS12O14924 1447 aa15.75■□□□□ 0.11
USF1-203ENST00000368021 SPINK5Q9NQ38 1064 aaPredicted RBP15.74■□□□□ 0.11
USF1-203ENST00000368021 NRAPQ86VF7 1730 aa15.74■□□□□ 0.11
USF1-203ENST00000368021 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.74■□□□□ 0.11
USF1-203ENST00000368021 SPATA31A1Q5TZJ5 1347 aa15.74■□□□□ 0.11
USF1-203ENST00000368021 COL5A2P05997 1499 aaPredicted RBP15.74■□□□□ 0.11
USF1-203ENST00000368021 GLI3P10071 1580 aa15.73■□□□□ 0.11
USF1-203ENST00000368021 IL16Q14005 1332 aa15.73■□□□□ 0.11
USF1-203ENST00000368021 LMO7Q8WWI1 1683 aa15.73■□□□□ 0.11
USF1-203ENST00000368021 SEPT12Q8IYM1 358 aa15.73■□□□□ 0.11
USF1-203ENST00000368021 RCAN3Q9UKA8 241 aa15.73■□□□□ 0.11
USF1-203ENST00000368021 RGPD5Q99666 1765 aa15.71■□□□□ 0.11
USF1-203ENST00000368021 LMOD3Q0VAK6 560 aa15.71■□□□□ 0.11
USF1-203ENST00000368021 COL18A1P39060 1754 aa15.71■□□□□ 0.11
USF1-203ENST00000368021 SOCS7O14512 581 aa15.71■□□□□ 0.1
USF1-203ENST00000368021 ANKRD24Q8TF21 1146 aa15.71■□□□□ 0.1
USF1-203ENST00000368021 MYH16Q9H6N6 1097 aa15.71■□□□□ 0.1
USF1-203ENST00000368021 NLRP2Q9NX02 1062 aa15.71■□□□□ 0.1
USF1-203ENST00000368021 WDR17Q8IZU2 1322 aa15.7■□□□□ 0.1
USF1-203ENST00000368021 NCAPD2Q15021 1401 aa15.7■□□□□ 0.1
USF1-203ENST00000368021 DLG5Q8TDM6 1919 aa15.7■□□□□ 0.1
USF1-203ENST00000368021 ERBB3P21860 1342 aa15.7■□□□□ 0.1
USF1-203ENST00000368021 ONECUT3O60422 494 aaPredicted RBP15.69■□□□□ 0.1
USF1-203ENST00000368021 CALD1Q05682 793 aaKnown RBP15.69■□□□□ 0.1
USF1-203ENST00000368021 CRB1P82279 1406 aa15.69■□□□□ 0.1
USF1-203ENST00000368021 FKBP8Q14318 412 aa15.68■□□□□ 0.1
USF1-203ENST00000368021 FAM182BQ5T319 152 aa15.68■□□□□ 0.1
USF1-203ENST00000368021 ERICH6BQ5W0A0 696 aa15.68■□□□□ 0.1
USF1-203ENST00000368021 NBPF6Q5VWK0 638 aa15.67■□□□□ 0.1
USF1-203ENST00000368021 NBPF4Q96M43 638 aa15.67■□□□□ 0.1
USF1-203ENST00000368021 TSHZ2Q9NRE2 1034 aa15.67■□□□□ 0.1
USF1-203ENST00000368021 GAS2L2Q8NHY3 880 aa15.66■□□□□ 0.1
USF1-203ENST00000368021 FAM208AQ9UK61 1670 aaKnown RBP15.65■□□□□ 0.1
USF1-203ENST00000368021 BARGINQ6ZT62 677 aa15.65■□□□□ 0.1
USF1-203ENST00000368021 KRT27Q7Z3Y8 459 aa15.65■□□□□ 0.1
USF1-203ENST00000368021 CARD10Q9BWT7 1032 aa15.65■□□□□ 0.1
USF1-203ENST00000368021 THRAP3Q9Y2W1 955 aaKnown RBP15.65■□□□□ 0.1
USF1-203ENST00000368021 RGPD2P0DJD1 1756 aa15.65■□□□□ 0.1
USF1-203ENST00000368021 CT47B1P0C2W7 299 aaPredicted RBP15.64■□□□□ 0.09
USF1-203ENST00000368021 RRP1P56182 461 aaKnown RBP15.64■□□□□ 0.09
USF1-203ENST00000368021 FANCIQ9NVI1 1328 aa15.64■□□□□ 0.09
USF1-203ENST00000368021 MTHFSDQ2M296 383 aaKnown RBP15.64■□□□□ 0.09
USF1-203ENST00000368021 USHBP1Q8N6Y0 703 aa15.64■□□□□ 0.09
USF1-203ENST00000368021 HTATSF1O43719 755 aaKnown RBP15.63■□□□□ 0.09
USF1-203ENST00000368021 IFT57Q9NWB7 429 aa15.63■□□□□ 0.09
USF1-203ENST00000368021 PLEKHG2Q9H7P9 1386 aa15.63■□□□□ 0.09
USF1-203ENST00000368021 GNAI1P63096 354 aa15.62■□□□□ 0.09
USF1-203ENST00000368021 ZNF853P0CG23 659 aa15.61■□□□□ 0.09
USF1-203ENST00000368021 BRWD3Q6RI45 1802 aa15.61■□□□□ 0.09
USF1-203ENST00000368021 DDB1Q16531 1140 aa15.61■□□□□ 0.09
USF1-203ENST00000368021 CFAP44Q96MT7 982 aa15.61■□□□□ 0.09
USF1-203ENST00000368021 UPF1Q92900 1129 aaKnown RBP eCLIP15.6■□□□□ 0.09
USF1-203ENST00000368021 AMOTQ4VCS5 1084 aa15.59■□□□□ 0.09
USF1-203ENST00000368021 RTF1Q92541 710 aaKnown RBP15.59■□□□□ 0.09
USF1-203ENST00000368021 TSR2Q969E8 191 aaKnown RBP15.59■□□□□ 0.09
USF1-203ENST00000368021 THUMPD2Q9BTF0 503 aaKnown RBP15.59■□□□□ 0.09
USF1-203ENST00000368021 GNAT3A8MTJ3 354 aa15.59■□□□□ 0.09
USF1-203ENST00000368021 IL2RBP14784 551 aa15.59■□□□□ 0.09
USF1-203ENST00000368021 IRX6P78412 446 aaPredicted RBP15.59■□□□□ 0.09
USF1-203ENST00000368021 MAP3K5Q99683 1374 aa15.58■□□□□ 0.08
USF1-203ENST00000368021 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.58■□□□□ 0.08
USF1-203ENST00000368021 THSD7AQ9UPZ6 1657 aa15.58■□□□□ 0.08
USF1-203ENST00000368021 LRRC37A3O60309 1634 aa15.57■□□□□ 0.08
USF1-203ENST00000368021 EXOC5O00471 708 aa15.57■□□□□ 0.08
USF1-203ENST00000368021 DCTN1Q14203 1278 aa15.57■□□□□ 0.08
USF1-203ENST00000368021 PLEKHO1Q53GL0 409 aaPredicted RBP15.57■□□□□ 0.08
USF1-203ENST00000368021 RARSP54136 660 aaKnown RBP15.57■□□□□ 0.08
USF1-203ENST00000368021 EXOSC9Q06265 439 aaKnown RBP15.57■□□□□ 0.08
USF1-203ENST00000368021 MCM10Q7L590 875 aa15.57■□□□□ 0.08
USF1-203ENST00000368021 ZNF428Q96B54 188 aa15.57■□□□□ 0.08
USF1-203ENST00000368021 CDCA7Q9BWT1 371 aaPredicted RBP15.57■□□□□ 0.08
USF1-203ENST00000368021 MBIPQ9NS73 344 aa15.56■□□□□ 0.08
USF1-203ENST00000368021 CHL1O00533 1208 aa15.55■□□□□ 0.08
USF1-203ENST00000368021 LAS1LQ9Y4W2 734 aaKnown RBP15.55■□□□□ 0.08
USF1-203ENST00000368021 RAPGEF4Q8WZA2 1011 aa15.54■□□□□ 0.08
USF1-203ENST00000368021 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.54■□□□□ 0.08
USF1-203ENST00000368021 SRCAPQ6ZRS2 3230 aa15.54■□□□□ 0.08
USF1-203ENST00000368021 DISP2A7MBM2 1401 aa15.54■□□□□ 0.08
USF1-203ENST00000368021 BCAR3O75815 825 aa15.54■□□□□ 0.08
USF1-203ENST00000368021 AKAP4Q5JQC9 854 aa15.54■□□□□ 0.08
USF1-203ENST00000368021 MARCH10Q8NA82 808 aaPredicted RBP15.54■□□□□ 0.08
USF1-203ENST00000368021 DDX54Q8TDD1 881 aaKnown RBP15.54■□□□□ 0.08
USF1-203ENST00000368021 CEMIPQ8WUJ3 1361 aa15.53■□□□□ 0.08
USF1-203ENST00000368021 FAM196AQ6ZSG2 479 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms