RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 BMP2KQ9NSY1 1161 aaPredicted RBP11.47□□□□□ -0.57
CHD3-202ENST00000358181 CNTROBQ8N137 903 aa11.47□□□□□ -0.57
CHD3-202ENST00000358181 IL27Q8NEV9 243 aa11.47□□□□□ -0.57
CHD3-202ENST00000358181 CCDC175P0C221 793 aa11.47□□□□□ -0.57
CHD3-202ENST00000358181 SPTY2D1Q68D10 685 aaPredicted RBP11.47□□□□□ -0.57
CHD3-202ENST00000358181 LUC7LQ9NQ29 371 aaKnown RBP11.47□□□□□ -0.57
CHD3-202ENST00000358181 KINO60870 393 aaKnown RBP11.46□□□□□ -0.57
CHD3-202ENST00000358181 POLR3DP05423 398 aaPredicted RBP11.46□□□□□ -0.57
CHD3-202ENST00000358181 PRKRIP1Q9H875 184 aaPredicted RBP11.46□□□□□ -0.57
CHD3-202ENST00000358181 TMX1Q9H3N1 280 aa11.46□□□□□ -0.57
CHD3-202ENST00000358181 TAF4BQ92750 862 aa11.46□□□□□ -0.58
CHD3-202ENST00000358181 TSNARE1Q96NA8 513 aa11.46□□□□□ -0.58
CHD3-202ENST00000358181 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.46□□□□□ -0.581e-6■■■□□ 15.6
CHD3-202ENST00000358181 ATAD2BQ9ULI0 1458 aa11.45□□□□□ -0.58
CHD3-202ENST00000358181 PDE4AP27815 886 aa11.45□□□□□ -0.58
CHD3-202ENST00000358181 PSMA5P28066 241 aa11.45□□□□□ -0.58
CHD3-202ENST00000358181 CCDC57Q2TAC2 916 aa11.45□□□□□ -0.58
CHD3-202ENST00000358181 ZNF710Q8N1W2 664 aa11.45□□□□□ -0.58
CHD3-202ENST00000358181 GIGYF2Q6Y7W6 1299 aaKnown RBP11.45□□□□□ -0.58
CHD3-202ENST00000358181 GSE1Q14687 1217 aa11.45□□□□□ -0.58
CHD3-202ENST00000358181 HOOK3Q86VS8 718 aa11.44□□□□□ -0.58
CHD3-202ENST00000358181 USP8P40818 1118 aa11.44□□□□□ -0.58
CHD3-202ENST00000358181 PSMC4P43686 418 aa11.44□□□□□ -0.58
CHD3-202ENST00000358181 ANKRD18BA2A2Z9 1011 aa11.44□□□□□ -0.58
CHD3-202ENST00000358181 INTS3Q68E01 1043 aaKnown RBP11.44□□□□□ -0.58
CHD3-202ENST00000358181 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.44□□□□□ -0.585e-28■□□□□ 10.7
CHD3-202ENST00000358181 SMARCA4P51532 1647 aa11.44□□□□□ -0.58
CHD3-202ENST00000358181 FGD5Q6ZNL6 1462 aa11.44□□□□□ -0.58
CHD3-202ENST00000358181 NDC80O14777 642 aa11.44□□□□□ -0.58
CHD3-202ENST00000358181 CFAP70Q5T0N1 1121 aa11.44□□□□□ -0.58
CHD3-202ENST00000358181 RNF187Q5TA31 235 aaPredicted RBP11.44□□□□□ -0.58
CHD3-202ENST00000358181 NOP9Q86U38 636 aaKnown RBP11.44□□□□□ -0.58
CHD3-202ENST00000358181 CETN2P41208 172 aa11.44□□□□□ -0.58
CHD3-202ENST00000358181 EIF5P55010 431 aaKnown RBP11.44□□□□□ -0.58
CHD3-202ENST00000358181 LRP2BPQ9P2M1 347 aa11.44□□□□□ -0.58
CHD3-202ENST00000358181 SAMM50Q9Y512 469 aa11.44□□□□□ -0.58
CHD3-202ENST00000358181 NACAP1Q9BZK3 213 aa11.43□□□□□ -0.58
CHD3-202ENST00000358181 LRRCC1Q9C099 1032 aa11.43□□□□□ -0.58
CHD3-202ENST00000358181 SEC63Q9UGP8 760 aaKnown RBP11.43□□□□□ -0.58
CHD3-202ENST00000358181 TRIM22Q8IYM9 498 aa11.43□□□□□ -0.58
CHD3-202ENST00000358181 CFAP57Q96MR6 1250 aa11.43□□□□□ -0.58
CHD3-202ENST00000358181 GAPVD1Q14C86 1478 aa11.43□□□□□ -0.58
CHD3-202ENST00000358181 PROSER2Q86WR7 435 aaPredicted RBP11.43□□□□□ -0.58
CHD3-202ENST00000358181 SLU7O95391 586 aaKnown RBP11.43□□□□□ -0.58
CHD3-202ENST00000358181 CCDC102AQ96A19 550 aa11.43□□□□□ -0.58
CHD3-202ENST00000358181 FEZ1Q99689 392 aa11.43□□□□□ -0.58
CHD3-202ENST00000358181 ABCF2Q9UG63 623 aa11.43□□□□□ -0.58
CHD3-202ENST00000358181 ADAMTS2O95450 1211 aa11.42□□□□□ -0.58
CHD3-202ENST00000358181 BICD1Q96G01 975 aa11.42□□□□□ -0.58
CHD3-202ENST00000358181 ARHGAP5Q13017 1502 aa11.42□□□□□ -0.58
CHD3-202ENST00000358181 UACAQ9BZF9 1416 aa11.42□□□□□ -0.58
CHD3-202ENST00000358181 CDCA7LQ96GN5 454 aa11.42□□□□□ -0.58
CHD3-202ENST00000358181 PRAM1Q96QH2 718 aa11.42□□□□□ -0.58
CHD3-202ENST00000358181 SRRTQ9BXP5 876 aaKnown RBP11.42□□□□□ -0.58
CHD3-202ENST00000358181 ZPR1O75312 459 aa11.42□□□□□ -0.58
CHD3-202ENST00000358181 TTC36A6NLP5 189 aa11.42□□□□□ -0.58
CHD3-202ENST00000358181 PPP4R4Q6NUP7 873 aa11.42□□□□□ -0.58
CHD3-202ENST00000358181 C11orf95C9JLR9 678 aaPredicted RBP11.41□□□□□ -0.58
CHD3-202ENST00000358181 MTHFSP49914 203 aa11.41□□□□□ -0.58
CHD3-202ENST00000358181 CUL5Q93034 780 aa11.41□□□□□ -0.58
CHD3-202ENST00000358181 ZNF622Q969S3 477 aaKnown RBP eCLIP11.41□□□□□ -0.581e-6■■■□□ 18.8
CHD3-202ENST00000358181 NOL7Q9UMY1 257 aaKnown RBP11.41□□□□□ -0.58
CHD3-202ENST00000358181 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.41□□□□□ -0.58
CHD3-202ENST00000358181 CENPQQ7L2Z9 268 aaPredicted RBP11.41□□□□□ -0.58
CHD3-202ENST00000358181 ZNF396Q96N95 335 aaPredicted RBP11.41□□□□□ -0.58
CHD3-202ENST00000358181 PLS1Q14651 629 aa11.41□□□□□ -0.58
CHD3-202ENST00000358181 BRPF3Q9ULD4 1205 aa11.41□□□□□ -0.58
CHD3-202ENST00000358181 ERICH4A6NGS2 130 aa11.41□□□□□ -0.58
CHD3-202ENST00000358181 CEP57L1Q8IYX8 460 aa11.41□□□□□ -0.58
CHD3-202ENST00000358181 UBAC1Q9BSL1 405 aa11.41□□□□□ -0.58
CHD3-202ENST00000358181 PPP1R12BO60237 982 aaPredicted RBP11.41□□□□□ -0.58
CHD3-202ENST00000358181 PIP4K2AP48426 406 aaPredicted RBP11.41□□□□□ -0.58
CHD3-202ENST00000358181 ME1P48163 572 aa11.4□□□□□ -0.58
CHD3-202ENST00000358181 SURF6O75683 361 aaKnown RBP11.4□□□□□ -0.58
CHD3-202ENST00000358181 CFAP58Q5T655 872 aa11.4□□□□□ -0.58
CHD3-202ENST00000358181 CKAP2LQ8IYA6 745 aa11.4□□□□□ -0.58
CHD3-202ENST00000358181 PPP1R14CQ8TAE6 165 aa11.4□□□□□ -0.58
CHD3-202ENST00000358181 TSR2Q969E8 191 aaKnown RBP11.4□□□□□ -0.58
CHD3-202ENST00000358181 SYNCQ9H7C4 482 aa11.4□□□□□ -0.58
CHD3-202ENST00000358181 ODF2LQ9ULJ1 636 aa11.4□□□□□ -0.58
CHD3-202ENST00000358181 NBPF1Q3BBV0 1214 aa11.4□□□□□ -0.58
CHD3-202ENST00000358181 IFFO1Q0D2I5 559 aa11.4□□□□□ -0.59
CHD3-202ENST00000358181 RUNDC1Q96C34 613 aa11.4□□□□□ -0.59
CHD3-202ENST00000358181 ADAMTS8Q9UP79 889 aa11.4□□□□□ -0.59
CHD3-202ENST00000358181 FIBPO43427 364 aa11.39□□□□□ -0.59
CHD3-202ENST00000358181 CSPG5O95196 566 aa11.39□□□□□ -0.59
CHD3-202ENST00000358181 FAM212AQ96EL1 285 aa11.39□□□□□ -0.59
CHD3-202ENST00000358181 MINDY4BA8MYZ0 360 aa11.39□□□□□ -0.59
CHD3-202ENST00000358181 MKNK2Q9HBH9 465 aa11.39□□□□□ -0.59
CHD3-202ENST00000358181 TPD52P55327 224 aaPredicted RBP11.39□□□□□ -0.59
CHD3-202ENST00000358181 RAPGEF3O95398 923 aa11.38□□□□□ -0.59
CHD3-202ENST00000358181 TATP17735 454 aaPredicted RBP11.38□□□□□ -0.59
CHD3-202ENST00000358181 ERLIN1O75477 346 aa11.38□□□□□ -0.59
CHD3-202ENST00000358181 SATB1Q01826 763 aa11.38□□□□□ -0.59
CHD3-202ENST00000358181 RRS1Q15050 365 aaKnown RBP11.38□□□□□ -0.59
CHD3-202ENST00000358181 RPGRQ92834 1020 aaKnown RBP11.38□□□□□ -0.59
CHD3-202ENST00000358181 KIF7Q2M1P5 1343 aa11.38□□□□□ -0.59
CHD3-202ENST00000358181 PRPF4BQ13523 1007 aaKnown RBP11.38□□□□□ -0.59
CHD3-202ENST00000358181 SEPT6Q14141 434 aa11.38□□□□□ -0.59
CHD3-202ENST00000358181 ROCK1Q13464 1354 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms