RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 CEP126Q9P2H0 1117 aa7.59□□□□□ -1.19
UPF2-201ENST00000356352 KIF2AO00139 706 aaPredicted RBP7.59□□□□□ -1.19
UPF2-201ENST00000356352 CEBPZQ03701 1054 aaKnown RBP7.59□□□□□ -1.19
UPF2-201ENST00000356352 IMMTQ16891 758 aaKnown RBP7.59□□□□□ -1.19
UPF2-201ENST00000356352 AACSQ86V21 672 aa7.59□□□□□ -1.19
UPF2-201ENST00000356352 AKAP2Q9Y2D5 859 aa7.59□□□□□ -1.19
UPF2-201ENST00000356352 ZNF652Q9Y2D9 606 aa7.59□□□□□ -1.19
UPF2-201ENST00000356352 EFCAB5A4FU69 1503 aa7.59□□□□□ -1.19
UPF2-201ENST00000356352 CDK19Q9BWU1 502 aa7.59□□□□□ -1.19
UPF2-201ENST00000356352 SEPT11Q9NVA2 429 aaKnown RBP7.59□□□□□ -1.2
UPF2-201ENST00000356352 RPAP2Q8IXW5 612 aaPredicted RBP7.58□□□□□ -1.2
UPF2-201ENST00000356352 RAI14Q9P0K7 980 aa7.58□□□□□ -1.2
UPF2-201ENST00000356352 ANKRD30BQ9BXX2 1392 aa7.58□□□□□ -1.2
UPF2-201ENST00000356352 ERICH3Q5RHP9 1530 aa7.58□□□□□ -1.2
UPF2-201ENST00000356352 MCM3P25205 808 aa7.58□□□□□ -1.2
UPF2-201ENST00000356352 SULT6B1Q6IMI4 303 aa7.58□□□□□ -1.2
UPF2-201ENST00000356352 TSG101Q99816 390 aa7.58□□□□□ -1.2
UPF2-201ENST00000356352 NUP62CLQ9H1M0 184 aa7.58□□□□□ -1.2
UPF2-201ENST00000356352 EHMT1Q9H9B1 1298 aa7.58□□□□□ -1.2
UPF2-201ENST00000356352 SEC63Q9UGP8 760 aaKnown RBP7.58□□□□□ -1.2
UPF2-201ENST00000356352 EPB41L2O43491 1005 aaKnown RBP7.58□□□□□ -1.2
UPF2-201ENST00000356352 MVPQ14764 893 aaKnown RBP7.58□□□□□ -1.2
UPF2-201ENST00000356352 ZSCAN29Q8IWY8 852 aaPredicted RBP7.58□□□□□ -1.2
UPF2-201ENST00000356352 SLC26A8Q96RN1 970 aa7.58□□□□□ -1.2
UPF2-201ENST00000356352 UPF3BQ9BZI7 483 aaKnown RBP7.58□□□□□ -1.2
UPF2-201ENST00000356352 KIAA1107Q9UPP5 1409 aa7.58□□□□□ -1.2
UPF2-201ENST00000356352 RAB11FIP3O75154 756 aa7.58□□□□□ -1.2
UPF2-201ENST00000356352 FGFR1OPO95684 399 aaKnown RBP7.58□□□□□ -1.2
UPF2-201ENST00000356352 STARD3NLO95772 234 aa7.58□□□□□ -1.2
UPF2-201ENST00000356352 STK3Q13188 491 aa7.58□□□□□ -1.2
UPF2-201ENST00000356352 ATF7IPQ6VMQ6 1270 aa7.58□□□□□ -1.2
UPF2-201ENST00000356352 PLEKHH1Q9ULM0 1364 aa7.58□□□□□ -1.2
UPF2-201ENST00000356352 BTBD11A6QL63 1104 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 KIF20AO95235 890 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 KCNH5Q8NCM2 988 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 EIF5P55010 431 aaKnown RBP7.57□□□□□ -1.2
UPF2-201ENST00000356352 CFAP70Q5T0N1 1121 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 KIAA1328Q86T90 577 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 CHD1LQ86WJ1 897 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 SPC24Q8NBT2 197 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 AIDAQ96BJ3 306 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 FKBP4Q02790 459 aaKnown RBP eCLIP7.57□□□□□ -1.2
UPF2-201ENST00000356352 ANKLE2Q86XL3 938 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 SIL1Q9H173 461 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 CCDC196A0A1B0GTZ2 297 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 VPS36Q86VN1 386 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 LRP2BPQ9P2M1 347 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 C9orf84Q5VXU9 1444 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 ERBINQ96RT1 1412 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 HECW1Q76N89 1606 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 POLA1P09884 1462 aaPredicted RBP7.57□□□□□ -1.2
UPF2-201ENST00000356352 SSBP05455 408 aaKnown RBP eCLIP7.57□□□□□ -1.2
UPF2-201ENST00000356352 TAX1BP1Q86VP1 789 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 RAB34Q9BZG1 259 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 C1orf115Q9H7X2 142 aa7.57□□□□□ -1.2
UPF2-201ENST00000356352 FCHSD2O94868 740 aa7.56□□□□□ -1.2
UPF2-201ENST00000356352 FKBP15Q5T1M5 1219 aa7.56□□□□□ -1.2
UPF2-201ENST00000356352 SLF2Q8IX21 1173 aa7.56□□□□□ -1.2
UPF2-201ENST00000356352 PDCL2Q8N4E4 241 aa7.56□□□□□ -1.2
UPF2-201ENST00000356352 DDX54Q8TDD1 881 aaKnown RBP7.56□□□□□ -1.2
UPF2-201ENST00000356352 SRGAP3O43295 1099 aa7.56□□□□□ -1.2
UPF2-201ENST00000356352 CCDC150Q8NCX0 1101 aa7.56□□□□□ -1.2
UPF2-201ENST00000356352 JAKMIP1Q96N16 626 aaKnown RBP7.56□□□□□ -1.2
UPF2-201ENST00000356352 PPP1R1BQ9UD71 204 aaPredicted RBP7.56□□□□□ -1.2
UPF2-201ENST00000356352 ZSCAN12O43309 604 aa7.56□□□□□ -1.2
UPF2-201ENST00000356352 SPA17Q15506 151 aa7.56□□□□□ -1.2
UPF2-201ENST00000356352 CAVIN4Q5BKX8 364 aa7.56□□□□□ -1.2
UPF2-201ENST00000356352 U3KPZ7 1027 aaPredicted RBP7.56□□□□□ -1.2
UPF2-201ENST00000356352 RAD54L2Q9Y4B4 1467 aa7.56□□□□□ -1.2
UPF2-201ENST00000356352 STAMBPO95630 424 aa7.56□□□□□ -1.2
UPF2-201ENST00000356352 HMGB1P09429 215 aaKnown RBP7.56□□□□□ -1.2
UPF2-201ENST00000356352 MYL6BP14649 208 aa7.56□□□□□ -1.2
UPF2-201ENST00000356352 ARHGAP29Q52LW3 1261 aa7.56□□□□□ -1.2
UPF2-201ENST00000356352 ZNF644Q9H582 1327 aaPredicted RBP7.55□□□□□ -1.2
UPF2-201ENST00000356352 MAP9Q49MG5 647 aa7.55□□□□□ -1.2
UPF2-201ENST00000356352 PLCD4Q9BRC7 762 aa7.55□□□□□ -1.2
UPF2-201ENST00000356352 PRDM11Q9NQV5 511 aa7.55□□□□□ -1.2
UPF2-201ENST00000356352 GNAT3A8MTJ3 354 aa7.55□□□□□ -1.2
UPF2-201ENST00000356352 MAP3K11Q16584 847 aa7.55□□□□□ -1.2
UPF2-201ENST00000356352 HSP90AB3PQ58FF7 597 aa7.55□□□□□ -1.2
UPF2-201ENST00000356352 CUL5Q93034 780 aa7.55□□□□□ -1.2
UPF2-201ENST00000356352 RUSC2Q8N2Y8 1516 aa7.55□□□□□ -1.2
UPF2-201ENST00000356352 TMEM266Q2M3C6 531 aa7.55□□□□□ -1.2
UPF2-201ENST00000356352 CABP1Q9NZU7 370 aa7.55□□□□□ -1.2
UPF2-201ENST00000356352 IFIT1P09914 478 aaKnown RBP7.54□□□□□ -1.2
UPF2-201ENST00000356352 CENPHQ9H3R5 247 aa7.54□□□□□ -1.2
UPF2-201ENST00000356352 GOLGA6L10A0A0M3HER8 536 aa7.54□□□□□ -1.2
UPF2-201ENST00000356352 ANAPC15P60006 121 aa7.54□□□□□ -1.2
UPF2-201ENST00000356352 PRG4Q92954 1404 aaPredicted RBP7.54□□□□□ -1.2
UPF2-201ENST00000356352 KIF1BPQ96EK5 621 aa7.54□□□□□ -1.2
UPF2-201ENST00000356352 GRPEL1Q9HAV7 217 aa7.54□□□□□ -1.2
UPF2-201ENST00000356352 PYM1Q9BRP8 204 aaKnown RBP7.54□□□□□ -1.2
UPF2-201ENST00000356352 LRRFIP2Q9Y608 721 aaKnown RBP7.54□□□□□ -1.2
UPF2-201ENST00000356352 SSR1P43307 286 aaKnown RBP7.54□□□□□ -1.2
UPF2-201ENST00000356352 USP5P45974 858 aa7.54□□□□□ -1.2
UPF2-201ENST00000356352 IL27Q8NEV9 243 aa7.54□□□□□ -1.2
UPF2-201ENST00000356352 TSR2Q969E8 191 aaKnown RBP7.54□□□□□ -1.2
UPF2-201ENST00000356352 RNF41Q9H4P4 317 aaPredicted RBP7.54□□□□□ -1.2
UPF2-201ENST00000356352 SH2B1Q9NRF2 756 aaPredicted RBP7.54□□□□□ -1.2
UPF2-201ENST00000356352 GCOM1H8Y6P7 765 aaPredicted RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms