RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 MTHFSP49914 203 aa25.94■■□□□ 1.74
SYNE4-202ENST00000340477 KAT6BQ8WYB5 2073 aa25.94■■□□□ 1.74
SYNE4-202ENST00000340477 PKD1L3Q7Z443 1732 aa25.94■■□□□ 1.74
SYNE4-202ENST00000340477 PARD3Q8TEW0 1356 aa25.94■■□□□ 1.74
SYNE4-202ENST00000340477 PCDH11XQ9BZA7 1347 aa25.93■■□□□ 1.74
SYNE4-202ENST00000340477 PCDH11YQ9BZA8 1340 aa25.93■■□□□ 1.74
SYNE4-202ENST00000340477 BCL11BQ9C0K0 894 aaPredicted RBP25.93■■□□□ 1.74
SYNE4-202ENST00000340477 IGSF1Q8N6C5 1336 aa25.92■■□□□ 1.74
SYNE4-202ENST00000340477 EN1Q05925 392 aaPredicted RBP25.92■■□□□ 1.74
SYNE4-202ENST00000340477 RGPD3A6NKT7 1758 aaPredicted RBP25.92■■□□□ 1.74
SYNE4-202ENST00000340477 RGPD4Q7Z3J3 1758 aa25.92■■□□□ 1.74
SYNE4-202ENST00000340477 PLEKHG2Q9H7P9 1386 aa25.91■■□□□ 1.74
SYNE4-202ENST00000340477 SPG7Q9UQ90 795 aa25.9■■□□□ 1.74
SYNE4-202ENST00000340477 DOT1LQ8TEK3 1739 aa25.89■■□□□ 1.74
SYNE4-202ENST00000340477 ACSBG1Q96GR2 724 aa25.88■■□□□ 1.73
SYNE4-202ENST00000340477 CFAP53Q96M91 514 aa25.88■■□□□ 1.73
SYNE4-202ENST00000340477 DIAPH1O60610 1272 aaKnown RBP25.86■■□□□ 1.73
SYNE4-202ENST00000340477 DDX10Q13206 875 aaKnown RBP25.86■■□□□ 1.73
SYNE4-202ENST00000340477 RREB1Q92766 1687 aa25.86■■□□□ 1.73
SYNE4-202ENST00000340477 IL13P35225 146 aa25.85■■□□□ 1.73
SYNE4-202ENST00000340477 EZH2Q15910 746 aaKnown RBP25.85■■□□□ 1.73
SYNE4-202ENST00000340477 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.85■■□□□ 1.73
SYNE4-202ENST00000340477 BTAF1O14981 1849 aa25.84■■□□□ 1.73
SYNE4-202ENST00000340477 CAMKK2Q96RR4 588 aa25.84■■□□□ 1.73
SYNE4-202ENST00000340477 SYTL4Q96C24 671 aaPredicted RBP25.83■■□□□ 1.73
SYNE4-202ENST00000340477 SULT6B1Q6IMI4 303 aa25.82■■□□□ 1.72
SYNE4-202ENST00000340477 PLSCR1O15162 318 aa25.81■■□□□ 1.72
SYNE4-202ENST00000340477 KCNQ2O43526 872 aa25.81■■□□□ 1.72
SYNE4-202ENST00000340477 NUP188Q5SRE5 1749 aa25.8■■□□□ 1.72
SYNE4-202ENST00000340477 COL3A1P02461 1466 aaPredicted RBP25.8■■□□□ 1.72
SYNE4-202ENST00000340477 PPP2R1AP30153 589 aa25.8■■□□□ 1.72
SYNE4-202ENST00000340477 PLEKHO1Q53GL0 409 aaPredicted RBP25.8■■□□□ 1.72
SYNE4-202ENST00000340477 KDRP35968 1356 aa25.8■■□□□ 1.72
SYNE4-202ENST00000340477 AMOTQ4VCS5 1084 aa25.79■■□□□ 1.72
SYNE4-202ENST00000340477 PTF1AQ7RTS3 328 aa25.79■■□□□ 1.72
SYNE4-202ENST00000340477 CYP27B1O15528 508 aa25.78■■□□□ 1.72
SYNE4-202ENST00000340477 AEBP1Q8IUX7 1158 aa25.78■■□□□ 1.72
SYNE4-202ENST00000340477 IFNL2Q8IZJ0 200 aa25.78■■□□□ 1.72
SYNE4-202ENST00000340477 U2SURPO15042 1029 aaKnown RBP25.77■■□□□ 1.72
SYNE4-202ENST00000340477 PRIM1P49642 420 aaKnown RBP25.77■■□□□ 1.72
SYNE4-202ENST00000340477 NBPF14Q5TI25 921 aa25.76■■□□□ 1.71
SYNE4-202ENST00000340477 NUDCQ9Y266 331 aa25.76■■□□□ 1.71
SYNE4-202ENST00000340477 RALBP1Q15311 655 aa25.75■■□□□ 1.71
SYNE4-202ENST00000340477 HSP90AB1P08238 724 aaKnown RBP25.74■■□□□ 1.71
SYNE4-202ENST00000340477 HMOX1P09601 288 aa25.74■■□□□ 1.71
SYNE4-202ENST00000340477 PHKG2P15735 406 aa25.74■■□□□ 1.71
SYNE4-202ENST00000340477 ZNF530Q6P9A1 599 aaPredicted RBP25.74■■□□□ 1.71
SYNE4-202ENST00000340477 TOGARAM1Q9Y4F4 1720 aa25.74■■□□□ 1.71
SYNE4-202ENST00000340477 ITGB4P16144 1822 aa25.73■■□□□ 1.71
SYNE4-202ENST00000340477 C1orf141Q5JVX7 400 aa25.73■■□□□ 1.71
SYNE4-202ENST00000340477 NKX1-1Q15270 411 aaPredicted RBP25.72■■□□□ 1.71
SYNE4-202ENST00000340477 ZNF316A6NFI3 1004 aaPredicted RBP25.7■■□□□ 1.7
SYNE4-202ENST00000340477 TXNRD1Q16881 649 aa25.7■■□□□ 1.7
SYNE4-202ENST00000340477 MPRIPQ6WCQ1 1025 aa25.68■■□□□ 1.7
SYNE4-202ENST00000340477 DCAF5Q96JK2 942 aa25.67■■□□□ 1.7
SYNE4-202ENST00000340477 TMOD3Q9NYL9 352 aa25.67■■□□□ 1.7
SYNE4-202ENST00000340477 LY75O60449 1722 aa25.66■■□□□ 1.7
SYNE4-202ENST00000340477 PSDA5PKW4 1024 aaPredicted RBP25.66■■□□□ 1.7
SYNE4-202ENST00000340477 U2AF1L5P0DN76 240 aaPredicted RBP25.65■■□□□ 1.7
SYNE4-202ENST00000340477 U2AF1Q01081 240 aaKnown RBP eCLIP25.65■■□□□ 1.7
SYNE4-202ENST00000340477 R3HDM1Q15032 1099 aaKnown RBP25.65■■□□□ 1.7
SYNE4-202ENST00000340477 SLC27A3Q5K4L6 730 aa25.65■■□□□ 1.7
SYNE4-202ENST00000340477 SMARCC1Q92922 1105 aaPredicted RBP25.64■■□□□ 1.7
SYNE4-202ENST00000340477 MYBBP1AQ9BQG0 1328 aaKnown RBP25.63■■□□□ 1.69
SYNE4-202ENST00000340477 PROM2Q8N271 834 aa25.63■■□□□ 1.69
SYNE4-202ENST00000340477 STK32BQ9NY57 414 aa25.63■■□□□ 1.69
SYNE4-202ENST00000340477 ERVV-2B6SEH9 535 aa25.62■■□□□ 1.69
SYNE4-202ENST00000340477 HMGB2P26583 209 aaKnown RBP25.62■■□□□ 1.69
SYNE4-202ENST00000340477 AKAP4Q5JQC9 854 aa25.62■■□□□ 1.69
SYNE4-202ENST00000340477 PALLDQ8WX93 1383 aa25.61■■□□□ 1.69
SYNE4-202ENST00000340477 SCN11AQ9UI33 1791 aa25.61■■□□□ 1.69
SYNE4-202ENST00000340477 KDM6AO15550 1401 aaPredicted RBP25.6■■□□□ 1.69
SYNE4-202ENST00000340477 VIRMAQ69YN4 1812 aaKnown RBP25.59■■□□□ 1.69
SYNE4-202ENST00000340477 NEFMP07197 916 aa25.59■■□□□ 1.69
SYNE4-202ENST00000340477 PRKAR2BP31323 418 aa25.59■■□□□ 1.69
SYNE4-202ENST00000340477 CABP4P57796 275 aa25.59■■□□□ 1.69
SYNE4-202ENST00000340477 GAS2L2Q8NHY3 880 aa25.59■■□□□ 1.69
SYNE4-202ENST00000340477 PIGBQ92521 554 aa25.59■■□□□ 1.69
SYNE4-202ENST00000340477 CCNL1Q9UK58 526 aaPredicted RBP25.59■■□□□ 1.69
SYNE4-202ENST00000340477 PAPPAQ13219 1627 aa25.59■■□□□ 1.69
SYNE4-202ENST00000340477 MTHFSDQ2M296 383 aaKnown RBP25.57■■□□□ 1.68
SYNE4-202ENST00000340477 RSPH6AQ9H0K4 717 aa25.57■■□□□ 1.68
SYNE4-202ENST00000340477 ANO8Q9HCE9 1232 aaPredicted RBP25.57■■□□□ 1.68
SYNE4-202ENST00000340477 FCHSD2O94868 740 aa25.56■■□□□ 1.68
SYNE4-202ENST00000340477 C5P01031 1676 aa25.55■■□□□ 1.68
SYNE4-202ENST00000340477 PRKRIP1Q9H875 184 aaPredicted RBP25.55■■□□□ 1.68
SYNE4-202ENST00000340477 SLC15A2Q16348 729 aa25.54■■□□□ 1.68
SYNE4-202ENST00000340477 PNNQ9H307 717 aaKnown RBP25.54■■□□□ 1.68
SYNE4-202ENST00000340477 MAP3K5Q99683 1374 aa25.54■■□□□ 1.68
SYNE4-202ENST00000340477 LRRC4BQ9NT99 713 aa25.53■■□□□ 1.68
SYNE4-202ENST00000340477 GNAT3A8MTJ3 354 aa25.51■■□□□ 1.67
SYNE4-202ENST00000340477 LRP5O75197 1615 aa25.51■■□□□ 1.67
SYNE4-202ENST00000340477 ADAMTS7Q9UKP4 1686 aa25.51■■□□□ 1.67
SYNE4-202ENST00000340477 TAF1LQ8IZX4 1826 aa25.51■■□□□ 1.67
SYNE4-202ENST00000340477 RNMTO43148 476 aaKnown RBP25.5■■□□□ 1.67
SYNE4-202ENST00000340477 MRC1P22897 1456 aa25.5■■□□□ 1.67
SYNE4-202ENST00000340477 ASAP1Q9ULH1 1129 aa25.5■■□□□ 1.67
SYNE4-202ENST00000340477 QSER1Q2KHR3 1735 aa25.49■■□□□ 1.67
SYNE4-202ENST00000340477 MAPK8IP3Q9UPT6 1336 aa25.48■■□□□ 1.67
SYNE4-202ENST00000340477 KCNQ4P56696 695 aa25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms