RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 USP17L10C9JJH3 530 aa6.31□□□□□ -1.4
HMGB1-201ENST00000326004 USP17L13C9JLJ4 530 aa6.31□□□□□ -1.4
HMGB1-201ENST00000326004 USP17L12C9JPN9 530 aa6.31□□□□□ -1.4
HMGB1-201ENST00000326004 USP17L11C9JVI0 530 aa6.31□□□□□ -1.4
HMGB1-201ENST00000326004 USP17L21D6R901 530 aa6.31□□□□□ -1.4
HMGB1-201ENST00000326004 USP17L18D6R9N7 530 aa6.31□□□□□ -1.4
HMGB1-201ENST00000326004 USP17L22D6RA61 530 aa6.31□□□□□ -1.4
HMGB1-201ENST00000326004 USP17L17D6RBQ6 530 aa6.31□□□□□ -1.4
HMGB1-201ENST00000326004 USP17L19D6RCP7 530 aa6.31□□□□□ -1.4
HMGB1-201ENST00000326004 USP17L20D6RJB6 530 aa6.31□□□□□ -1.4
HMGB1-201ENST00000326004 USP17L24Q0WX57 530 aa6.31□□□□□ -1.4
HMGB1-201ENST00000326004 OGFOD1Q8N543 542 aa6.31□□□□□ -1.4
HMGB1-201ENST00000326004 ZNF784Q8NCA9 323 aaPredicted RBP6.31□□□□□ -1.4
HMGB1-201ENST00000326004 TMPRSS4Q9NRS4 437 aa6.31□□□□□ -1.4
HMGB1-201ENST00000326004 DNAAF2Q9NVR5 837 aaKnown RBP6.31□□□□□ -1.4
HMGB1-201ENST00000326004 USTQ9Y2C2 406 aa6.31□□□□□ -1.4
HMGB1-201ENST00000326004 J3QL48 77 aa6.3□□□□□ -1.4
HMGB1-201ENST00000326004 SMPD1P17405 629 aa6.3□□□□□ -1.4
HMGB1-201ENST00000326004 PTK7Q13308 1070 aa6.3□□□□□ -1.4
HMGB1-201ENST00000326004 CRTC2Q53ET0 693 aaPredicted RBP6.3□□□□□ -1.4
HMGB1-201ENST00000326004 CYP2U1Q7Z449 544 aa6.3□□□□□ -1.4
HMGB1-201ENST00000326004 RETREG2Q8NC44 543 aa6.3□□□□□ -1.4
HMGB1-201ENST00000326004 CYLDQ9NQC7 956 aa6.3□□□□□ -1.4
HMGB1-201ENST00000326004 RBM19Q9Y4C8 960 aaKnown RBP6.3□□□□□ -1.4
HMGB1-201ENST00000326004 PCDHGA11Q9Y5H2 935 aa6.3□□□□□ -1.4
HMGB1-201ENST00000326004 LILRA1O75019 489 aa6.29□□□□□ -1.4
HMGB1-201ENST00000326004 SCTRP47872 440 aa6.29□□□□□ -1.4
HMGB1-201ENST00000326004 CLDN10P78369 228 aa6.29□□□□□ -1.4
HMGB1-201ENST00000326004 ANKMY2Q8IV38 441 aa6.29□□□□□ -1.4
HMGB1-201ENST00000326004 SIX5Q8N196 739 aa6.29□□□□□ -1.4
HMGB1-201ENST00000326004 OSBPL3Q9H4L5 887 aa6.29□□□□□ -1.4
HMGB1-201ENST00000326004 NOVA2Q9UNW9 492 aaKnown RBP6.29□□□□□ -1.4
HMGB1-201ENST00000326004 PDZRN3Q9UPQ7 1066 aa6.29□□□□□ -1.4
HMGB1-201ENST00000326004 ZBTB7BO15156 539 aaPredicted RBP6.28□□□□□ -1.4
HMGB1-201ENST00000326004 ZIC2O95409 532 aaPredicted RBP6.28□□□□□ -1.4
HMGB1-201ENST00000326004 PSME1Q06323 249 aa6.28□□□□□ -1.4
HMGB1-201ENST00000326004 FAM200AQ8TCP9 573 aa6.28□□□□□ -1.4
HMGB1-201ENST00000326004 ZNF594Q96JF6 807 aaPredicted RBP6.28□□□□□ -1.4
HMGB1-201ENST00000326004 KLF16Q9BXK1 252 aaPredicted RBP6.28□□□□□ -1.4
HMGB1-201ENST00000326004 ZMIZ1Q9ULJ6 1067 aa6.28□□□□□ -1.4
HMGB1-201ENST00000326004 WASLO00401 505 aaPredicted RBP6.27□□□□□ -1.41
HMGB1-201ENST00000326004 GNRH1P01148 92 aa6.27□□□□□ -1.41
HMGB1-201ENST00000326004 PDIA4P13667 645 aaKnown RBP6.27□□□□□ -1.41
HMGB1-201ENST00000326004 TIMP2P16035 220 aa6.27□□□□□ -1.41
HMGB1-201ENST00000326004 WDR4P57081 412 aaKnown RBP6.27□□□□□ -1.41
HMGB1-201ENST00000326004 DPYDQ12882 1025 aa6.27□□□□□ -1.41
HMGB1-201ENST00000326004 CCDC102BQ68D86 513 aa6.27□□□□□ -1.41
HMGB1-201ENST00000326004 ITPKCQ96DU7 683 aa6.27□□□□□ -1.41
HMGB1-201ENST00000326004 TRAIPQ9BWF2 469 aa6.27□□□□□ -1.41
HMGB1-201ENST00000326004 M0R2N6 131 aa6.26□□□□□ -1.41
HMGB1-201ENST00000326004 ADH1AP07327 375 aa6.26□□□□□ -1.41
HMGB1-201ENST00000326004 ADD1P35611 737 aaKnown RBP6.26□□□□□ -1.41
HMGB1-201ENST00000326004 SEC13P55735 322 aa6.26□□□□□ -1.41
HMGB1-201ENST00000326004 Q6ZVU0 165 aa6.26□□□□□ -1.41
HMGB1-201ENST00000326004 TPCN2Q8NHX9 752 aa6.26□□□□□ -1.41
HMGB1-201ENST00000326004 KIAA1024Q9UPX6 916 aa6.26□□□□□ -1.41
HMGB1-201ENST00000326004 TMEM88BA6NKF7 163 aa6.25□□□□□ -1.41
HMGB1-201ENST00000326004 DKK1O94907 266 aa6.25□□□□□ -1.41
HMGB1-201ENST00000326004 SWI5Q1ZZU3 235 aa6.25□□□□□ -1.41
HMGB1-201ENST00000326004 ESCO1Q5FWF5 840 aa6.25□□□□□ -1.41
HMGB1-201ENST00000326004 TMEM164Q5U3C3 297 aa6.25□□□□□ -1.41
HMGB1-201ENST00000326004 STK32AQ8WU08 396 aa6.25□□□□□ -1.41
HMGB1-201ENST00000326004 HPS1Q92902 700 aa6.25□□□□□ -1.41
HMGB1-201ENST00000326004 ZFAND3Q9H8U3 227 aa6.25□□□□□ -1.41
HMGB1-201ENST00000326004 FAM187AA6NFU0 413 aa6.24□□□□□ -1.41
HMGB1-201ENST00000326004 BACH1O14867 736 aa6.24□□□□□ -1.41
HMGB1-201ENST00000326004 AVPP01185 164 aa6.24□□□□□ -1.41
HMGB1-201ENST00000326004 GDF10P55107 478 aa6.24□□□□□ -1.41
HMGB1-201ENST00000326004 LAPTM4AQ15012 233 aa6.24□□□□□ -1.41
HMGB1-201ENST00000326004 MEIOBQ8N635 442 aa6.24□□□□□ -1.41
HMGB1-201ENST00000326004 TMEM229AB2RXF0 380 aa6.23□□□□□ -1.41
HMGB1-201ENST00000326004 NRG2O14511 850 aaPredicted RBP6.23□□□□□ -1.41
HMGB1-201ENST00000326004 CAPN5O15484 640 aaPredicted RBP6.23□□□□□ -1.41
HMGB1-201ENST00000326004 INHAP05111 366 aa6.23□□□□□ -1.41
HMGB1-201ENST00000326004 PTGIRP43119 386 aa6.23□□□□□ -1.41
HMGB1-201ENST00000326004 SCNN1DP51172 638 aa6.23□□□□□ -1.41
HMGB1-201ENST00000326004 CBLBQ13191 982 aa6.23□□□□□ -1.41
HMGB1-201ENST00000326004 B4GALNT3Q6L9W6 998 aa6.23□□□□□ -1.41
HMGB1-201ENST00000326004 ETNK1Q9HBU6 452 aa6.23□□□□□ -1.41
HMGB1-201ENST00000326004 ZNF358Q9NW07 568 aa6.23□□□□□ -1.41
HMGB1-201ENST00000326004 GFRA3O60609 400 aa6.22□□□□□ -1.41
HMGB1-201ENST00000326004 DGAT1O75907 488 aa6.22□□□□□ -1.41
HMGB1-201ENST00000326004 CTC1Q2NKJ3 1217 aa6.22□□□□□ -1.41
HMGB1-201ENST00000326004 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.22□□□□□ -1.41
HMGB1-201ENST00000326004 CLP1Q92989 425 aaKnown RBP6.22□□□□□ -1.41
HMGB1-201ENST00000326004 ARHGEF10LQ9HCE6 1279 aa6.22□□□□□ -1.41
HMGB1-201ENST00000326004 SFI1A8K8P3 1242 aa6.21□□□□□ -1.42
HMGB1-201ENST00000326004 UPP2O95045 317 aa6.21□□□□□ -1.42
HMGB1-201ENST00000326004 SMCPP49901 116 aaPredicted RBP6.21□□□□□ -1.42
HMGB1-201ENST00000326004 FAM69CQ0P6D2 419 aa6.21□□□□□ -1.42
HMGB1-201ENST00000326004 CLN3Q13286 438 aa6.21□□□□□ -1.42
HMGB1-201ENST00000326004 PKDCCQ504Y2 493 aa6.21□□□□□ -1.42
HMGB1-201ENST00000326004 KDF1Q8NAX2 398 aaPredicted RBP6.21□□□□□ -1.42
HMGB1-201ENST00000326004 XAGE2Q96GT9 111 aa6.21□□□□□ -1.42
HMGB1-201ENST00000326004 SLC4A9Q96Q91 983 aa6.21□□□□□ -1.42
HMGB1-201ENST00000326004 ESYT1Q9BSJ8 1104 aa6.21□□□□□ -1.42
HMGB1-201ENST00000326004 TSEN34Q9BSV6 310 aaKnown RBP6.21□□□□□ -1.42
HMGB1-201ENST00000326004 A0A1W2PRU2 124 aa6.2□□□□□ -1.42
HMGB1-201ENST00000326004 BRD1O95696 1058 aa6.2□□□□□ -1.42
HMGB1-201ENST00000326004 RELBQ01201 579 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms