RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 CALD1Q05682 793 aaKnown RBP16.61■□□□□ 0.25
DDX39A-202ENST00000324340 NLRP2Q9NX02 1062 aa16.61■□□□□ 0.25
DDX39A-202ENST00000324340 HTATSF1O43719 755 aaKnown RBP16.6■□□□□ 0.25
DDX39A-202ENST00000324340 CSB-PGBD3P0DP91 1061 aa16.6■□□□□ 0.25
DDX39A-202ENST00000324340 LRRC37A3O60309 1634 aa16.6■□□□□ 0.25
DDX39A-202ENST00000324340 AMOTQ4VCS5 1084 aa16.59■□□□□ 0.25
DDX39A-202ENST00000324340 MYH16Q9H6N6 1097 aa16.59■□□□□ 0.25
DDX39A-202ENST00000324340 PKD1L3Q7Z443 1732 aa16.59■□□□□ 0.25
DDX39A-202ENST00000324340 NRAPQ86VF7 1730 aa16.59■□□□□ 0.25
DDX39A-202ENST00000324340 PARP4Q9UKK3 1724 aaKnown RBP16.58■□□□□ 0.24
DDX39A-202ENST00000324340 NWD2Q9ULI1 1742 aa16.58■□□□□ 0.24
DDX39A-202ENST00000324340 MEGF6O75095 1541 aa16.58■□□□□ 0.24
DDX39A-202ENST00000324340 ZNF853P0CG23 659 aa16.57■□□□□ 0.24
DDX39A-202ENST00000324340 PLEKHO1Q53GL0 409 aaPredicted RBP16.57■□□□□ 0.24
DDX39A-202ENST00000324340 CARD10Q9BWT7 1032 aa16.57■□□□□ 0.24
DDX39A-202ENST00000324340 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.57■□□□□ 0.24
DDX39A-202ENST00000324340 SPATA31A6Q5VVP1 1343 aa16.57■□□□□ 0.24
DDX39A-202ENST00000324340 MAP3K5Q99683 1374 aa16.57■□□□□ 0.24
DDX39A-202ENST00000324340 CRB1P82279 1406 aa16.57■□□□□ 0.24
DDX39A-202ENST00000324340 MSH5O43196 834 aa16.56■□□□□ 0.24
DDX39A-202ENST00000324340 BTG4Q9NY30 223 aa16.56■□□□□ 0.24
DDX39A-202ENST00000324340 RNF123Q5XPI4 1314 aa16.56■□□□□ 0.24
DDX39A-202ENST00000324340 ADAMTS7Q9UKP4 1686 aa16.56■□□□□ 0.24
DDX39A-202ENST00000324340 OVOS2A0A0G2JMS6 1433 aa16.55■□□□□ 0.24
DDX39A-202ENST00000324340 GNAT3A8MTJ3 354 aa16.55■□□□□ 0.24
DDX39A-202ENST00000324340 SLIT2O94813 1529 aa16.55■□□□□ 0.24
DDX39A-202ENST00000324340 LARP1Q6PKG0 1096 aaKnown RBP16.55■□□□□ 0.24
DDX39A-202ENST00000324340 TOM1L2Q6ZVM7 507 aa16.55■□□□□ 0.24
DDX39A-202ENST00000324340 RAPGEF4Q8WZA2 1011 aa16.55■□□□□ 0.24
DDX39A-202ENST00000324340 THUMPD2Q9BTF0 503 aaKnown RBP16.55■□□□□ 0.24
DDX39A-202ENST00000324340 IFT57Q9NWB7 429 aa16.55■□□□□ 0.24
DDX39A-202ENST00000324340 TATP17735 454 aaPredicted RBP16.54■□□□□ 0.24
DDX39A-202ENST00000324340 EVA1CP58658 441 aa16.54■□□□□ 0.24
DDX39A-202ENST00000324340 GNAI1P63096 354 aa16.54■□□□□ 0.24
DDX39A-202ENST00000324340 CFAP44Q96MT7 982 aa16.54■□□□□ 0.24
DDX39A-202ENST00000324340 RCAN3Q9UKA8 241 aa16.54■□□□□ 0.24
DDX39A-202ENST00000324340 CEMIPQ8WUJ3 1361 aa16.53■□□□□ 0.24
DDX39A-202ENST00000324340 HSPA1LP34931 641 aa16.53■□□□□ 0.24
DDX39A-202ENST00000324340 DCTN1Q14203 1278 aa16.53■□□□□ 0.24
DDX39A-202ENST00000324340 AKAP4Q5JQC9 854 aa16.53■□□□□ 0.24
DDX39A-202ENST00000324340 RTF1Q92541 710 aaKnown RBP16.53■□□□□ 0.24
DDX39A-202ENST00000324340 SOCS7O14512 581 aa16.52■□□□□ 0.24
DDX39A-202ENST00000324340 ADAMTS2O95450 1211 aa16.52■□□□□ 0.24
DDX39A-202ENST00000324340 MCM10Q7L590 875 aa16.52■□□□□ 0.24
DDX39A-202ENST00000324340 STRN4Q9NRL3 753 aa16.52■□□□□ 0.24
DDX39A-202ENST00000324340 VIRMAQ69YN4 1812 aaKnown RBP16.52■□□□□ 0.24
DDX39A-202ENST00000324340 LRP6O75581 1613 aa16.52■□□□□ 0.23
DDX39A-202ENST00000324340 NUTM2BA6NNL0 878 aaPredicted RBP16.51■□□□□ 0.23
DDX39A-202ENST00000324340 NUTM2EB1AL46 878 aaPredicted RBP16.51■□□□□ 0.23
DDX39A-202ENST00000324340 CT47B1P0C2W7 299 aaPredicted RBP16.51■□□□□ 0.23
DDX39A-202ENST00000324340 ZNF530Q6P9A1 599 aaPredicted RBP16.51■□□□□ 0.23
DDX39A-202ENST00000324340 NUTM2AQ8IVF1 878 aaPredicted RBP16.51■□□□□ 0.23
DDX39A-202ENST00000324340 SPG7Q9UQ90 795 aa16.51■□□□□ 0.23
DDX39A-202ENST00000324340 WNK3Q9BYP7 1800 aa16.51■□□□□ 0.23
DDX39A-202ENST00000324340 CHL1O00533 1208 aa16.51■□□□□ 0.23
DDX39A-202ENST00000324340 IL17REQ8NFR9 667 aa16.51■□□□□ 0.23
DDX39A-202ENST00000324340 TSR2Q969E8 191 aaKnown RBP16.51■□□□□ 0.23
DDX39A-202ENST00000324340 SHANK3Q9BYB0 1731 aa16.5■□□□□ 0.23
DDX39A-202ENST00000324340 IL2RBP14784 551 aa16.5■□□□□ 0.23
DDX39A-202ENST00000324340 MBIPQ9NS73 344 aa16.5■□□□□ 0.23
DDX39A-202ENST00000324340 DISP2A7MBM2 1401 aa16.49■□□□□ 0.23
DDX39A-202ENST00000324340 C1orf141Q5JVX7 400 aa16.49■□□□□ 0.23
DDX39A-202ENST00000324340 BABAM1Q9NWV8 329 aa16.49■□□□□ 0.23
DDX39A-202ENST00000324340 SCN11AQ9UI33 1791 aa16.49■□□□□ 0.23
DDX39A-202ENST00000324340 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.48■□□□□ 0.23
DDX39A-202ENST00000324340 SIPA1L3O60292 1781 aaPredicted RBP16.48■□□□□ 0.23
DDX39A-202ENST00000324340 PHKG2P15735 406 aa16.47■□□□□ 0.23
DDX39A-202ENST00000324340 EXOSC9Q06265 439 aaKnown RBP16.47■□□□□ 0.23
DDX39A-202ENST00000324340 BCL9LQ86UU0 1499 aa16.46■□□□□ 0.23
DDX39A-202ENST00000324340 RNMTO43148 476 aaKnown RBP16.46■□□□□ 0.23
DDX39A-202ENST00000324340 IFNL2Q8IZJ0 200 aa16.46■□□□□ 0.23
DDX39A-202ENST00000324340 FNBP4Q8N3X1 1017 aaPredicted RBP16.46■□□□□ 0.23
DDX39A-202ENST00000324340 LGR6Q9HBX8 967 aa16.46■□□□□ 0.23
DDX39A-202ENST00000324340 THRAP3Q9Y2W1 955 aaKnown RBP16.46■□□□□ 0.23
DDX39A-202ENST00000324340 LAS1LQ9Y4W2 734 aaKnown RBP16.46■□□□□ 0.23
DDX39A-202ENST00000324340 SPATA31A1Q5TZJ5 1347 aa16.45■□□□□ 0.22
DDX39A-202ENST00000324340 KDM6AO15550 1401 aaPredicted RBP16.45■□□□□ 0.22
DDX39A-202ENST00000324340 CYP27B1O15528 508 aa16.45■□□□□ 0.22
DDX39A-202ENST00000324340 RRP1P56182 461 aaKnown RBP16.45■□□□□ 0.22
DDX39A-202ENST00000324340 ZCRB1Q8TBF4 217 aaKnown RBP16.45■□□□□ 0.22
DDX39A-202ENST00000324340 ZNF428Q96B54 188 aa16.45■□□□□ 0.22
DDX39A-202ENST00000324340 MRC1P22897 1456 aa16.45■□□□□ 0.22
DDX39A-202ENST00000324340 KDM3BQ7LBC6 1761 aa16.45■□□□□ 0.22
DDX39A-202ENST00000324340 PCDH11XQ9BZA7 1347 aa16.44■□□□□ 0.22
DDX39A-202ENST00000324340 PCDH11YQ9BZA8 1340 aa16.44■□□□□ 0.22
DDX39A-202ENST00000324340 TAF7Q15545 349 aaPredicted RBP16.44■□□□□ 0.22
DDX39A-202ENST00000324340 UNC5CLQ8IV45 518 aa16.44■□□□□ 0.22
DDX39A-202ENST00000324340 SPATA31A5Q5VU36 1347 aa16.44■□□□□ 0.22
DDX39A-202ENST00000324340 SPATA31A7Q8IWB4 1347 aa16.44■□□□□ 0.22
DDX39A-202ENST00000324340 HSP90AB1P08238 724 aaKnown RBP16.43■□□□□ 0.22
DDX39A-202ENST00000324340 RARSP54136 660 aaKnown RBP16.43■□□□□ 0.22
DDX39A-202ENST00000324340 MPRIPQ6WCQ1 1025 aa16.43■□□□□ 0.22
DDX39A-202ENST00000324340 CDCA7Q9BWT1 371 aaPredicted RBP16.43■□□□□ 0.22
DDX39A-202ENST00000324340 NKX1-1Q15270 411 aaPredicted RBP16.42■□□□□ 0.22
DDX39A-202ENST00000324340 NGLY1Q96IV0 654 aa16.42■□□□□ 0.22
DDX39A-202ENST00000324340 DCAF5Q96JK2 942 aa16.42■□□□□ 0.22
DDX39A-202ENST00000324340 C8orf37Q96NL8 207 aa16.42■□□□□ 0.22
DDX39A-202ENST00000324340 USP35Q9P2H5 1018 aa16.42■□□□□ 0.22
DDX39A-202ENST00000324340 VAMP4O75379 141 aa16.41■□□□□ 0.22
DDX39A-202ENST00000324340 DEKP35659 375 aaKnown RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms