RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 FLIIQ13045 1269 aa11.42□□□□□ -0.58
TMEM39A-201ENST00000319172 CHD1LQ86WJ1 897 aa11.42□□□□□ -0.58
TMEM39A-201ENST00000319172 C22orf23Q9BZE7 217 aa11.42□□□□□ -0.58
TMEM39A-201ENST00000319172 SIL1Q9H173 461 aa11.42□□□□□ -0.58
TMEM39A-201ENST00000319172 SRGAP3O43295 1099 aa11.42□□□□□ -0.58
TMEM39A-201ENST00000319172 VAMP4O75379 141 aa11.42□□□□□ -0.58
TMEM39A-201ENST00000319172 IP6K1Q92551 441 aa11.42□□□□□ -0.58
TMEM39A-201ENST00000319172 LMTK2Q8IWU2 1503 aa11.42□□□□□ -0.58
TMEM39A-201ENST00000319172 SLC39A6Q13433 755 aa11.42□□□□□ -0.58
TMEM39A-201ENST00000319172 HSP90AB4PQ58FF6 505 aa11.42□□□□□ -0.58
TMEM39A-201ENST00000319172 NEUROD6Q96NK8 337 aa11.42□□□□□ -0.58
TMEM39A-201ENST00000319172 IL1RAPL2Q9NP60 686 aa11.42□□□□□ -0.58
TMEM39A-201ENST00000319172 MADDQ8WXG6 1647 aa11.41□□□□□ -0.58
TMEM39A-201ENST00000319172 BLMP54132 1417 aaPredicted RBP11.41□□□□□ -0.58
TMEM39A-201ENST00000319172 ADGRB3O60242 1522 aa11.41□□□□□ -0.58
TMEM39A-201ENST00000319172 NLRP1Q9C000 1473 aa11.41□□□□□ -0.58
TMEM39A-201ENST00000319172 CLASRPQ8N2M8 674 aaKnown RBP11.41□□□□□ -0.58
TMEM39A-201ENST00000319172 IFNL2Q8IZJ0 200 aa11.4□□□□□ -0.58
TMEM39A-201ENST00000319172 SYNMO15061 1565 aa11.4□□□□□ -0.58
TMEM39A-201ENST00000319172 MSH5O43196 834 aa11.4□□□□□ -0.58
TMEM39A-201ENST00000319172 REC8O95072 547 aa11.4□□□□□ -0.58
TMEM39A-201ENST00000319172 SMARCA5O60264 1052 aaPredicted RBP11.4□□□□□ -0.58
TMEM39A-201ENST00000319172 FRAT2O75474 233 aaPredicted RBP11.4□□□□□ -0.58
TMEM39A-201ENST00000319172 CDC45O75419 566 aa11.39□□□□□ -0.59
TMEM39A-201ENST00000319172 FOXD4L5Q5VV16 416 aaPredicted RBP11.39□□□□□ -0.59
TMEM39A-201ENST00000319172 RPAP2Q8IXW5 612 aaPredicted RBP11.39□□□□□ -0.59
TMEM39A-201ENST00000319172 FOXD4L4Q8WXT5 416 aaPredicted RBP11.39□□□□□ -0.59
TMEM39A-201ENST00000319172 GZF1Q9H116 711 aaPredicted RBP11.39□□□□□ -0.59
TMEM39A-201ENST00000319172 KAT6BQ8WYB5 2073 aa11.39□□□□□ -0.59
TMEM39A-201ENST00000319172 ST18O60284 1047 aa11.39□□□□□ -0.59
TMEM39A-201ENST00000319172 INTS3Q68E01 1043 aaKnown RBP11.39□□□□□ -0.59
TMEM39A-201ENST00000319172 SBNO1A3KN83 1393 aa11.39□□□□□ -0.59
TMEM39A-201ENST00000319172 MRPL50Q8N5N7 158 aaKnown RBP11.39□□□□□ -0.59
TMEM39A-201ENST00000319172 TULP1O00294 542 aaPredicted RBP11.38□□□□□ -0.59
TMEM39A-201ENST00000319172 NBPF6Q5VWK0 638 aa11.38□□□□□ -0.59
TMEM39A-201ENST00000319172 NBPF4Q96M43 638 aa11.38□□□□□ -0.59
TMEM39A-201ENST00000319172 LRRCC1Q9C099 1032 aa11.38□□□□□ -0.59
TMEM39A-201ENST00000319172 ISY1Q9ULR0 285 aaKnown RBP11.38□□□□□ -0.59
TMEM39A-201ENST00000319172 DIP2BQ9P265 1576 aa11.38□□□□□ -0.59
TMEM39A-201ENST00000319172 PI4KAP2A4QPH2 592 aa11.38□□□□□ -0.59
TMEM39A-201ENST00000319172 PI4KAP1Q8N8J0 262 aa11.38□□□□□ -0.59
TMEM39A-201ENST00000319172 CCDC85AQ96PX6 553 aaPredicted RBP11.38□□□□□ -0.59
TMEM39A-201ENST00000319172 TMX4Q9H1E5 349 aaPredicted RBP11.38□□□□□ -0.59
TMEM39A-201ENST00000319172 TMOD3Q9NYL9 352 aa11.38□□□□□ -0.59
TMEM39A-201ENST00000319172 DBF4Q9UBU7 674 aaPredicted RBP11.38□□□□□ -0.59
TMEM39A-201ENST00000319172 ZMYM4Q5VZL5 1548 aa11.38□□□□□ -0.59
TMEM39A-201ENST00000319172 KIF6Q6ZMV9 814 aa11.37□□□□□ -0.59
TMEM39A-201ENST00000319172 DNAAF4Q8WXU2 420 aa11.37□□□□□ -0.59
TMEM39A-201ENST00000319172 LRRFIP2Q9Y608 721 aaKnown RBP11.37□□□□□ -0.59
TMEM39A-201ENST00000319172 CAMSAP1Q5T5Y3 1602 aa11.37□□□□□ -0.59
TMEM39A-201ENST00000319172 MAP4K4O95819 1239 aaPredicted RBP11.37□□□□□ -0.59
TMEM39A-201ENST00000319172 PIP4K2AP48426 406 aaPredicted RBP11.37□□□□□ -0.59
TMEM39A-201ENST00000319172 MEIS3Q99687 375 aa11.37□□□□□ -0.59
TMEM39A-201ENST00000319172 ALKQ9UM73 1620 aa11.37□□□□□ -0.59
TMEM39A-201ENST00000319172 GLI2P10070 1586 aa11.37□□□□□ -0.59
TMEM39A-201ENST00000319172 TMEM94Q12767 1356 aa11.37□□□□□ -0.59
TMEM39A-201ENST00000319172 RTN4Q9NQC3 1192 aaKnown RBP11.37□□□□□ -0.59
TMEM39A-201ENST00000319172 CHPF2Q9P2E5 772 aa11.37□□□□□ -0.59
TMEM39A-201ENST00000319172 NPHP4O75161 1426 aaPredicted RBP11.37□□□□□ -0.59
TMEM39A-201ENST00000319172 AKAP4Q5JQC9 854 aa11.37□□□□□ -0.59
TMEM39A-201ENST00000319172 ERC2O15083 957 aa11.36□□□□□ -0.59
TMEM39A-201ENST00000319172 NGLY1Q96IV0 654 aa11.36□□□□□ -0.59
TMEM39A-201ENST00000319172 NFATC2IPQ8NCF5 419 aa11.36□□□□□ -0.59
TMEM39A-201ENST00000319172 FAM135BQ49AJ0 1406 aa11.36□□□□□ -0.59
TMEM39A-201ENST00000319172 PTPRCP08575 1304 aa11.36□□□□□ -0.59
TMEM39A-201ENST00000319172 MYD88Q99836 296 aa11.36□□□□□ -0.59
TMEM39A-201ENST00000319172 FMNL2Q96PY5 1086 aa11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 LGR6Q9HBX8 967 aa11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 SLAIN2Q9P270 581 aa11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 RUFY2Q8WXA3 655 aa11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 UBAP1LF5GYI3 381 aa11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 HSP90B1P14625 803 aaKnown RBP11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 JARID2Q92833 1246 aaPredicted RBP11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 PLEKHF1Q96S99 279 aa11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 PHF23Q9BUL5 403 aaPredicted RBP11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 CLTCQ00610 1675 aaKnown RBP11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 EXOC5O00471 708 aa11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 FOXD4L6Q3SYB3 417 aaPredicted RBP11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 FOXD4L3Q6VB84 417 aaPredicted RBP11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 NUTM1Q86Y26 1132 aa11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 ZCRB1Q8TBF4 217 aaKnown RBP11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 MAP3K2Q9Y2U5 619 aa11.35□□□□□ -0.59
TMEM39A-201ENST00000319172 MAP3K5Q99683 1374 aa11.34□□□□□ -0.59
TMEM39A-201ENST00000319172 ARHGAP45Q92619 1136 aa11.34□□□□□ -0.59
TMEM39A-201ENST00000319172 GBP4Q96PP9 640 aa11.34□□□□□ -0.59
TMEM39A-201ENST00000319172 TOMM22Q9NS69 142 aa11.34□□□□□ -0.59
TMEM39A-201ENST00000319172 USP6P35125 1406 aa11.34□□□□□ -0.59
TMEM39A-201ENST00000319172 ZBTB3Q9H5J0 574 aa11.34□□□□□ -0.59
TMEM39A-201ENST00000319172 ATP5J2-PTCD1G3V325 749 aa11.34□□□□□ -0.59
TMEM39A-201ENST00000319172 LARP1Q6PKG0 1096 aaKnown RBP11.34□□□□□ -0.59
TMEM39A-201ENST00000319172 G2E3Q7L622 706 aa11.34□□□□□ -0.59
TMEM39A-201ENST00000319172 ATP7BP35670 1465 aa11.34□□□□□ -0.59
TMEM39A-201ENST00000319172 HTATSF1O43719 755 aaKnown RBP11.33□□□□□ -0.6
TMEM39A-201ENST00000319172 DNAJC2Q99543 621 aaKnown RBP11.33□□□□□ -0.6
TMEM39A-201ENST00000319172 FRMPD1Q5SYB0 1578 aa11.33□□□□□ -0.6
TMEM39A-201ENST00000319172 FSD1Q9BTV5 496 aa11.33□□□□□ -0.6
TMEM39A-201ENST00000319172 INSRP06213 1382 aa11.33□□□□□ -0.6
TMEM39A-201ENST00000319172 CHL1O00533 1208 aa11.33□□□□□ -0.6
TMEM39A-201ENST00000319172 DEKP35659 375 aaKnown RBP11.33□□□□□ -0.6
TMEM39A-201ENST00000319172 RNF123Q5XPI4 1314 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 152.9 ms