RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 TXNRD1Q16881 649 aa19.94■□□□□ 0.78
HMGN3-201ENST00000275036 PANK3Q9H999 370 aa19.94■□□□□ 0.78
HMGN3-201ENST00000275036 PAPPAQ13219 1627 aa19.94■□□□□ 0.78
HMGN3-201ENST00000275036 KIF24Q5T7B8 1368 aa19.94■□□□□ 0.78
HMGN3-201ENST00000275036 DDX54Q8TDD1 881 aaKnown RBP19.93■□□□□ 0.78
HMGN3-201ENST00000275036 PDGFDQ9GZP0 370 aaPredicted RBP19.92■□□□□ 0.78
HMGN3-201ENST00000275036 SMG6Q86US8 1419 aaKnown RBP19.92■□□□□ 0.78
HMGN3-201ENST00000275036 KIF7Q2M1P5 1343 aa19.9■□□□□ 0.78
HMGN3-201ENST00000275036 NSD2O96028 1365 aa19.9■□□□□ 0.78
HMGN3-201ENST00000275036 NCAPD2Q15021 1401 aa19.89■□□□□ 0.77
HMGN3-201ENST00000275036 ZCRB1Q8TBF4 217 aaKnown RBP19.89■□□□□ 0.77
HMGN3-201ENST00000275036 POLKQ9UBT6 870 aa19.87■□□□□ 0.77
HMGN3-201ENST00000275036 PKD1L3Q7Z443 1732 aa19.87■□□□□ 0.77
HMGN3-201ENST00000275036 WASHC2AQ641Q2 1341 aa19.86■□□□□ 0.77
HMGN3-201ENST00000275036 PPM1GO15355 546 aaPredicted RBP19.86■□□□□ 0.77
HMGN3-201ENST00000275036 LRRC4BQ9NT99 713 aa19.86■□□□□ 0.77
HMGN3-201ENST00000275036 TNNT2P45379 298 aaPredicted RBP19.85■□□□□ 0.77
HMGN3-201ENST00000275036 TOGARAM1Q9Y4F4 1720 aa19.85■□□□□ 0.77
HMGN3-201ENST00000275036 PRIM1P49642 420 aaKnown RBP19.84■□□□□ 0.77
HMGN3-201ENST00000275036 SLC15A2Q16348 729 aa19.84■□□□□ 0.77
HMGN3-201ENST00000275036 RAPGEF4Q8WZA2 1011 aa19.84■□□□□ 0.77
HMGN3-201ENST00000275036 LY75O60449 1722 aa19.84■□□□□ 0.77
HMGN3-201ENST00000275036 TATP17735 454 aaPredicted RBP19.83■□□□□ 0.77
HMGN3-201ENST00000275036 ZNF827Q17R98 1081 aa19.82■□□□□ 0.76
HMGN3-201ENST00000275036 SYTL4Q96C24 671 aaPredicted RBP19.82■□□□□ 0.76
HMGN3-201ENST00000275036 STK32BQ9NY57 414 aa19.82■□□□□ 0.76
HMGN3-201ENST00000275036 EYA1Q99502 592 aa19.81■□□□□ 0.76
HMGN3-201ENST00000275036 SPON1Q9HCB6 807 aa19.81■□□□□ 0.76
HMGN3-201ENST00000275036 CYP27B1O15528 508 aa19.8■□□□□ 0.76
HMGN3-201ENST00000275036 KCNQ4P56696 695 aa19.8■□□□□ 0.76
HMGN3-201ENST00000275036 PCDH11XQ9BZA7 1347 aa19.79■□□□□ 0.76
HMGN3-201ENST00000275036 PCDH11YQ9BZA8 1340 aa19.79■□□□□ 0.76
HMGN3-201ENST00000275036 TUBGCP6Q96RT7 1819 aa19.79■□□□□ 0.76
HMGN3-201ENST00000275036 ZBTB7AO95365 584 aa19.79■□□□□ 0.76
HMGN3-201ENST00000275036 EIF4A2Q14240 407 aaKnown RBP19.79■□□□□ 0.76
HMGN3-201ENST00000275036 KNSTRNQ9Y448 316 aa19.79■□□□□ 0.76
HMGN3-201ENST00000275036 AMER1Q5JTC6 1135 aaPredicted RBP19.78■□□□□ 0.76
HMGN3-201ENST00000275036 AKT1S1Q96B36 256 aa19.77■□□□□ 0.76
HMGN3-201ENST00000275036 ITGB4P16144 1822 aa19.76■□□□□ 0.75
HMGN3-201ENST00000275036 PER1O15534 1290 aaPredicted RBP19.76■□□□□ 0.75
HMGN3-201ENST00000275036 PTGER2P43116 358 aa19.76■□□□□ 0.75
HMGN3-201ENST00000275036 MORC1Q86VD1 984 aa19.76■□□□□ 0.75
HMGN3-201ENST00000275036 QSER1Q2KHR3 1735 aa19.76■□□□□ 0.75
HMGN3-201ENST00000275036 SLC27A3Q5K4L6 730 aa19.75■□□□□ 0.75
HMGN3-201ENST00000275036 ATF5Q9Y2D1 282 aaPredicted RBP19.74■□□□□ 0.75
HMGN3-201ENST00000275036 IGSF1Q8N6C5 1336 aa19.74■□□□□ 0.75
HMGN3-201ENST00000275036 SGIP1Q9BQI5 828 aa19.73■□□□□ 0.75
HMGN3-201ENST00000275036 C5P01031 1676 aa19.71■□□□□ 0.75
HMGN3-201ENST00000275036 NKX1-1Q15270 411 aaPredicted RBP19.71■□□□□ 0.75
HMGN3-201ENST00000275036 PPP1R1BQ9UD71 204 aaPredicted RBP19.71■□□□□ 0.75
HMGN3-201ENST00000275036 PNPLA7Q6ZV29 1317 aa19.71■□□□□ 0.75
HMGN3-201ENST00000275036 MPRIPQ6WCQ1 1025 aa19.7■□□□□ 0.74
HMGN3-201ENST00000275036 MTFR1LQ9H019 292 aa19.7■□□□□ 0.74
HMGN3-201ENST00000275036 CCNL1Q9UK58 526 aaPredicted RBP19.7■□□□□ 0.74
HMGN3-201ENST00000275036 TAF1LQ8IZX4 1826 aa19.69■□□□□ 0.74
HMGN3-201ENST00000275036 COL24A1Q17RW2 1714 aa19.69■□□□□ 0.74
HMGN3-201ENST00000275036 SPG7Q9UQ90 795 aa19.69■□□□□ 0.74
HMGN3-201ENST00000275036 PALLDQ8WX93 1383 aa19.69■□□□□ 0.74
HMGN3-201ENST00000275036 PHKG2P15735 406 aa19.68■□□□□ 0.74
HMGN3-201ENST00000275036 CC2D1BQ5T0F9 858 aaKnown RBP19.68■□□□□ 0.74
HMGN3-201ENST00000275036 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.68■□□□□ 0.745e-8■□□□□ 10.4
HMGN3-201ENST00000275036 AEBP1Q8IUX7 1158 aa19.67■□□□□ 0.74
HMGN3-201ENST00000275036 PIGBQ92521 554 aa19.67■□□□□ 0.74
HMGN3-201ENST00000275036 PLEKHG2Q9H7P9 1386 aa19.65■□□□□ 0.74
HMGN3-201ENST00000275036 IL13P35225 146 aa19.64■□□□□ 0.73
HMGN3-201ENST00000275036 IFNL2Q8IZJ0 200 aa19.64■□□□□ 0.73
HMGN3-201ENST00000275036 TFCP2L1Q9NZI6 479 aa19.64■□□□□ 0.73
HMGN3-201ENST00000275036 NPC1L1Q9UHC9 1359 aa19.64■□□□□ 0.73
HMGN3-201ENST00000275036 C4BP0C0L5 1744 aa19.63■□□□□ 0.73
HMGN3-201ENST00000275036 MTHFSP49914 203 aa19.63■□□□□ 0.73
HMGN3-201ENST00000275036 KDM6AO15550 1401 aaPredicted RBP19.62■□□□□ 0.73
HMGN3-201ENST00000275036 KDRP35968 1356 aa19.62■□□□□ 0.73
HMGN3-201ENST00000275036 CNGB1Q14028 1251 aaPredicted RBP19.62■□□□□ 0.73
HMGN3-201ENST00000275036 FHDC1Q9C0D6 1143 aaPredicted RBP19.62■□□□□ 0.73
HMGN3-201ENST00000275036 AMIGO3Q86WK7 504 aa19.61■□□□□ 0.73
HMGN3-201ENST00000275036 COL23A1Q86Y22 540 aaPredicted RBP19.61■□□□□ 0.73
HMGN3-201ENST00000275036 ARXQ96QS3 562 aa19.6■□□□□ 0.73
HMGN3-201ENST00000275036 ASAP1Q9ULH1 1129 aa19.6■□□□□ 0.73
HMGN3-201ENST00000275036 UTRNP46939 3433 aa19.6■□□□□ 0.73
HMGN3-201ENST00000275036 SULT6B1Q6IMI4 303 aa19.59■□□□□ 0.73
HMGN3-201ENST00000275036 SLC16A10Q8TF71 515 aa19.59■□□□□ 0.73
HMGN3-201ENST00000275036 SYT17Q9BSW7 474 aa19.59■□□□□ 0.73
HMGN3-201ENST00000275036 TMOD3Q9NYL9 352 aa19.59■□□□□ 0.73
HMGN3-201ENST00000275036 UBR3Q6ZT12 1888 aa19.58■□□□□ 0.73
HMGN3-201ENST00000275036 SMARCC1Q92922 1105 aaPredicted RBP19.58■□□□□ 0.72
HMGN3-201ENST00000275036 ATG3Q9NT62 314 aa19.58■□□□□ 0.72
HMGN3-201ENST00000275036 COL3A1P02461 1466 aaPredicted RBP19.58■□□□□ 0.72
HMGN3-201ENST00000275036 PLEKHO1Q53GL0 409 aaPredicted RBP19.57■□□□□ 0.72
HMGN3-201ENST00000275036 ZNF530Q6P9A1 599 aaPredicted RBP19.57■□□□□ 0.72
HMGN3-201ENST00000275036 SMIM5Q71RC9 77 aa19.57■□□□□ 0.72
HMGN3-201ENST00000275036 VIRMAQ69YN4 1812 aaKnown RBP19.57■□□□□ 0.72
HMGN3-201ENST00000275036 LOC102724428A0A0B4J2F2 783 aa19.56■□□□□ 0.72
HMGN3-201ENST00000275036 SIK1P57059 783 aa19.56■□□□□ 0.72
HMGN3-201ENST00000275036 ITPK1Q13572 414 aa19.56■□□□□ 0.72
HMGN3-201ENST00000275036 LINC00116Q8NCU8 138 aa19.56■□□□□ 0.72
HMGN3-201ENST00000275036 MAP3K5Q99683 1374 aa19.56■□□□□ 0.72
HMGN3-201ENST00000275036 DCAF5Q96JK2 942 aa19.55■□□□□ 0.72
HMGN3-201ENST00000275036 AMOTQ4VCS5 1084 aa19.54■□□□□ 0.72
HMGN3-201ENST00000275036 SLC4A9Q96Q91 983 aa19.54■□□□□ 0.72
HMGN3-201ENST00000275036 SCN11AQ9UI33 1791 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms