RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 ATG3Q9NT62 314 aa11.11□□□□□ -0.63
PDGFC-201ENST00000274071 ZDHHC9Q9Y397 364 aa11.11□□□□□ -0.63
PDGFC-201ENST00000274071 RAD50Q92878 1312 aa11.11□□□□□ -0.63
PDGFC-201ENST00000274071 CCDC146Q8IYE0 955 aa11.11□□□□□ -0.63
PDGFC-201ENST00000274071 DRC1Q96MC2 740 aa11.11□□□□□ -0.63
PDGFC-201ENST00000274071 DONSONQ9NYP3 566 aa11.11□□□□□ -0.63
PDGFC-201ENST00000274071 MBD3O95983 291 aa11.1□□□□□ -0.63
PDGFC-201ENST00000274071 FAM184AQ8NB25 1140 aa11.1□□□□□ -0.63
PDGFC-201ENST00000274071 NEK11Q8NG66 645 aa11.1□□□□□ -0.63
PDGFC-201ENST00000274071 ATP7AQ04656 1500 aa11.1□□□□□ -0.63
PDGFC-201ENST00000274071 APAF1O14727 1248 aa11.1□□□□□ -0.63
PDGFC-201ENST00000274071 SART3Q15020 963 aaKnown RBP11.1□□□□□ -0.63
PDGFC-201ENST00000274071 TSGA10IPQ3SY00 556 aa11.1□□□□□ -0.63
PDGFC-201ENST00000274071 DNAJC21Q5F1R6 531 aaKnown RBP11.1□□□□□ -0.63
PDGFC-201ENST00000274071 CDCA8Q53HL2 280 aa11.1□□□□□ -0.63
PDGFC-201ENST00000274071 KRBA2Q6ZNG9 492 aa11.1□□□□□ -0.63
PDGFC-201ENST00000274071 FBXO38Q6PIJ6 1188 aa11.09□□□□□ -0.63
PDGFC-201ENST00000274071 ATP10AO60312 1499 aa11.09□□□□□ -0.63
PDGFC-201ENST00000274071 HSP90AB3PQ58FF7 597 aa11.09□□□□□ -0.63
PDGFC-201ENST00000274071 CCDC112Q8NEF3 446 aa11.09□□□□□ -0.63
PDGFC-201ENST00000274071 RNF217Q8TC41 542 aa11.09□□□□□ -0.63
PDGFC-201ENST00000274071 KIF3BO15066 747 aa11.08□□□□□ -0.64
PDGFC-201ENST00000274071 C16orf45Q96MC5 204 aaPredicted RBP11.08□□□□□ -0.64
PDGFC-201ENST00000274071 INO80Q9ULG1 1556 aaPredicted RBP11.08□□□□□ -0.64
PDGFC-201ENST00000274071 CXorf56Q9H5V9 222 aa11.08□□□□□ -0.64
PDGFC-201ENST00000274071 CD109Q6YHK3 1445 aa11.08□□□□□ -0.64
PDGFC-201ENST00000274071 KDM4AO75164 1064 aa11.07□□□□□ -0.64
PDGFC-201ENST00000274071 STK26Q9P289 416 aa11.07□□□□□ -0.64
PDGFC-201ENST00000274071 PAXBP1Q9Y5B6 917 aa11.07□□□□□ -0.64
PDGFC-201ENST00000274071 PRAG1Q86YV5 1406 aa11.07□□□□□ -0.64
PDGFC-201ENST00000274071 MCCP23508 829 aa11.07□□□□□ -0.64
PDGFC-201ENST00000274071 RARSP54136 660 aaKnown RBP11.07□□□□□ -0.64
PDGFC-201ENST00000274071 NBPF20Q3BBV1 942 aa11.07□□□□□ -0.64
PDGFC-201ENST00000274071 TNNT1P13805 278 aa11.07□□□□□ -0.64
PDGFC-201ENST00000274071 TXLNBQ8N3L3 684 aa11.07□□□□□ -0.64
PDGFC-201ENST00000274071 ZGPATQ8N5A5 531 aaKnown RBP11.07□□□□□ -0.64
PDGFC-201ENST00000274071 GTF3C6Q969F1 213 aa11.07□□□□□ -0.64
PDGFC-201ENST00000274071 CWC22Q9HCG8 908 aaKnown RBP11.07□□□□□ -0.64
PDGFC-201ENST00000274071 SUFUQ9UMX1 484 aa11.07□□□□□ -0.64
PDGFC-201ENST00000274071 A2MP01023 1474 aa11.07□□□□□ -0.64
PDGFC-201ENST00000274071 GOLIM4O00461 696 aa11.06□□□□□ -0.64
PDGFC-201ENST00000274071 ATP2B1P20020 1258 aa11.06□□□□□ -0.64
PDGFC-201ENST00000274071 CCDC191Q8NCU4 936 aa11.06□□□□□ -0.64
PDGFC-201ENST00000274071 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.06□□□□□ -0.64
PDGFC-201ENST00000274071 V9GYY5 206 aaPredicted RBP11.06□□□□□ -0.64
PDGFC-201ENST00000274071 PPP2R1AP30153 589 aa11.06□□□□□ -0.64
PDGFC-201ENST00000274071 RTF1Q92541 710 aaKnown RBP11.06□□□□□ -0.64
PDGFC-201ENST00000274071 KANK1Q14678 1352 aa11.06□□□□□ -0.64
PDGFC-201ENST00000274071 ANKRD36BQ8N2N9 1353 aa11.06□□□□□ -0.64
PDGFC-201ENST00000274071 DEPDC5O75140 1603 aa11.05□□□□□ -0.64
PDGFC-201ENST00000274071 CCDC189A1A4V9 331 aa11.05□□□□□ -0.64
PDGFC-201ENST00000274071 TPM3P06753 285 aa11.05□□□□□ -0.64
PDGFC-201ENST00000274071 GSCP56915 257 aaPredicted RBP11.05□□□□□ -0.64
PDGFC-201ENST00000274071 PLCB2Q00722 1185 aa11.05□□□□□ -0.64
PDGFC-201ENST00000274071 BMS1Q14692 1282 aaKnown RBP11.05□□□□□ -0.64
PDGFC-201ENST00000274071 ZSCAN26Q16670 478 aa11.05□□□□□ -0.64
PDGFC-201ENST00000274071 SRLQ86TD4 932 aa11.05□□□□□ -0.64
PDGFC-201ENST00000274071 PACS2Q86VP3 889 aa11.05□□□□□ -0.64
PDGFC-201ENST00000274071 SYAP1Q96A49 352 aaPredicted RBP11.05□□□□□ -0.64
PDGFC-201ENST00000274071 SGSM3Q96HU1 749 aa11.05□□□□□ -0.64
PDGFC-201ENST00000274071 AP5Z1O43299 807 aa11.05□□□□□ -0.64
PDGFC-201ENST00000274071 HCLS1P14317 486 aaPredicted RBP11.05□□□□□ -0.64
PDGFC-201ENST00000274071 SPC24Q8NBT2 197 aa11.05□□□□□ -0.64
PDGFC-201ENST00000274071 ZNF215Q9UL58 517 aaPredicted RBP11.05□□□□□ -0.64
PDGFC-201ENST00000274071 SH3BP1Q9Y3L3 701 aa11.05□□□□□ -0.64
PDGFC-201ENST00000274071 ZNF518AQ6AHZ1 1483 aa11.05□□□□□ -0.64
PDGFC-201ENST00000274071 A0A1B0GUL7 405 aa11.04□□□□□ -0.64
PDGFC-201ENST00000274071 E2F4Q16254 413 aa11.04□□□□□ -0.64
PDGFC-201ENST00000274071 GOLGA6L1Q8N7Z2 621 aa11.04□□□□□ -0.64
PDGFC-201ENST00000274071 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.04□□□□□ -0.64
PDGFC-201ENST00000274071 BCL2L13Q9BXK5 485 aa11.04□□□□□ -0.64
PDGFC-201ENST00000274071 MED4Q9NPJ6 270 aa11.04□□□□□ -0.64
PDGFC-201ENST00000274071 LRRFIP2Q9Y608 721 aaKnown RBP11.04□□□□□ -0.64
PDGFC-201ENST00000274071 KIF1CO43896 1103 aaKnown RBP11.04□□□□□ -0.64
PDGFC-201ENST00000274071 TDO2P48775 406 aa11.04□□□□□ -0.64
PDGFC-201ENST00000274071 MAP2K1Q02750 393 aaPredicted RBP11.04□□□□□ -0.64
PDGFC-201ENST00000274071 HDAC1Q13547 482 aaPredicted RBP11.04□□□□□ -0.64
PDGFC-201ENST00000274071 FOXD4L5Q5VV16 416 aaPredicted RBP11.04□□□□□ -0.64
PDGFC-201ENST00000274071 FOXD4L4Q8WXT5 416 aaPredicted RBP11.04□□□□□ -0.64
PDGFC-201ENST00000274071 FAM212AQ96EL1 285 aa11.04□□□□□ -0.64
PDGFC-201ENST00000274071 FHOD1Q9Y613 1164 aa11.04□□□□□ -0.64
PDGFC-201ENST00000274071 TRPM1Q7Z4N2 1603 aa11.04□□□□□ -0.64
PDGFC-201ENST00000274071 MVPQ14764 893 aaKnown RBP11.04□□□□□ -0.64
PDGFC-201ENST00000274071 SLFNL1Q499Z3 407 aa11.04□□□□□ -0.64
PDGFC-201ENST00000274071 DEF6Q9H4E7 631 aa11.04□□□□□ -0.64
PDGFC-201ENST00000274071 KIDINS220Q9ULH0 1771 aa11.03□□□□□ -0.64
PDGFC-201ENST00000274071 ST5P78524 1137 aa11.03□□□□□ -0.64
PDGFC-201ENST00000274071 ELF2Q15723 593 aa11.03□□□□□ -0.64
PDGFC-201ENST00000274071 TEX35Q5T0J7 233 aa11.03□□□□□ -0.64
PDGFC-201ENST00000274071 RRP15Q9Y3B9 282 aaKnown RBP11.03□□□□□ -0.64
PDGFC-201ENST00000274071 PTPRCP08575 1304 aa11.03□□□□□ -0.64
PDGFC-201ENST00000274071 PLA2G4AP47712 749 aa11.03□□□□□ -0.64
PDGFC-201ENST00000274071 CYB5RLQ6IPT4 315 aa11.03□□□□□ -0.64
PDGFC-201ENST00000274071 CCDC91Q7Z6B0 441 aa11.03□□□□□ -0.64
PDGFC-201ENST00000274071 SEMA3FQ13275 785 aa11.02□□□□□ -0.64
PDGFC-201ENST00000274071 TTC31Q49AM3 519 aaPredicted RBP11.02□□□□□ -0.64
PDGFC-201ENST00000274071 TBC1D9Q6ZT07 1266 aa11.02□□□□□ -0.64
PDGFC-201ENST00000274071 TICAM2Q86XR7 235 aa11.02□□□□□ -0.64
PDGFC-201ENST00000274071 SMARCE1Q969G3 411 aa11.02□□□□□ -0.64
PDGFC-201ENST00000274071 RABEP1Q15276 862 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms