RNA–Protein interactions for RNA: ENST00000253794.6

VPS25-201, Transcript of vacuolar protein sorting 25 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS25, Length 1,101 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-201ENST00000253794 RAPGEF4Q8WZA2 1011 aa18.83■□□□□ 0.6
VPS25-201ENST00000253794 TNS2Q63HR2 1409 aa18.83■□□□□ 0.6
VPS25-201ENST00000253794 RGS12O14924 1447 aa18.82■□□□□ 0.6
VPS25-201ENST00000253794 TATP17735 454 aaPredicted RBP18.81■□□□□ 0.6
VPS25-201ENST00000253794 WDR43Q15061 677 aaKnown RBP eCLIP18.81■□□□□ 0.6
VPS25-201ENST00000253794 HMOX1P09601 288 aa18.8■□□□□ 0.6
VPS25-201ENST00000253794 SEPT12Q8IYM1 358 aa18.79■□□□□ 0.6
VPS25-201ENST00000253794 PLEKHF1Q96S99 279 aa18.79■□□□□ 0.6
VPS25-201ENST00000253794 PNNQ9H307 717 aaKnown RBP18.79■□□□□ 0.6
VPS25-201ENST00000253794 ADAMTS8Q9UP79 889 aa18.79■□□□□ 0.6
VPS25-201ENST00000253794 SHANK3Q9BYB0 1731 aa18.78■□□□□ 0.6
VPS25-201ENST00000253794 AMOTQ4VCS5 1084 aa18.78■□□□□ 0.6
VPS25-201ENST00000253794 PRKAR2BP31323 418 aa18.77■□□□□ 0.6
VPS25-201ENST00000253794 DDB1Q16531 1140 aa18.77■□□□□ 0.6
VPS25-201ENST00000253794 ZCRB1Q8TBF4 217 aaKnown RBP18.77■□□□□ 0.6
VPS25-201ENST00000253794 BCL9O00512 1426 aa18.76■□□□□ 0.59
VPS25-201ENST00000253794 EXOC5O00471 708 aa18.76■□□□□ 0.59
VPS25-201ENST00000253794 SPG7Q9UQ90 795 aa18.76■□□□□ 0.59
VPS25-201ENST00000253794 PLEKHO1Q53GL0 409 aaPredicted RBP18.75■□□□□ 0.59
VPS25-201ENST00000253794 PCDH11XQ9BZA7 1347 aa18.74■□□□□ 0.59
VPS25-201ENST00000253794 PCDH11YQ9BZA8 1340 aa18.74■□□□□ 0.59
VPS25-201ENST00000253794 BRWD3Q6RI45 1802 aa18.73■□□□□ 0.59
VPS25-201ENST00000253794 RUNDC1Q96C34 613 aa18.73■□□□□ 0.59
VPS25-201ENST00000253794 PHACTR3Q96KR7 559 aa18.73■□□□□ 0.59
VPS25-201ENST00000253794 CYP27B1O15528 508 aa18.72■□□□□ 0.59
VPS25-201ENST00000253794 GAS2L2Q8NHY3 880 aa18.72■□□□□ 0.59
VPS25-201ENST00000253794 NKX1-1Q15270 411 aaPredicted RBP18.71■□□□□ 0.59
VPS25-201ENST00000253794 MTHFSDQ2M296 383 aaKnown RBP18.71■□□□□ 0.59
VPS25-201ENST00000253794 KRT27Q7Z3Y8 459 aa18.71■□□□□ 0.59
VPS25-201ENST00000253794 MARCH10Q8NA82 808 aaPredicted RBP18.71■□□□□ 0.59
VPS25-201ENST00000253794 A0A0G2JS52 829 aa18.7■□□□□ 0.58
VPS25-201ENST00000253794 PHKG2P15735 406 aa18.7■□□□□ 0.58
VPS25-201ENST00000253794 MYT1Q01538 1121 aa18.7■□□□□ 0.58
VPS25-201ENST00000253794 PDE3BQ13370 1112 aa18.7■□□□□ 0.58
VPS25-201ENST00000253794 IFNL2Q8IZJ0 200 aa18.7■□□□□ 0.58
VPS25-201ENST00000253794 ADAMTS7Q9UKP4 1686 aa18.69■□□□□ 0.58
VPS25-201ENST00000253794 NEFMP07197 916 aa18.69■□□□□ 0.58
VPS25-201ENST00000253794 NCBP3Q53F19 620 aaKnown RBP18.69■□□□□ 0.58
VPS25-201ENST00000253794 AKAP4Q5JQC9 854 aa18.69■□□□□ 0.58
VPS25-201ENST00000253794 MAPK8IP3Q9UPT6 1336 aa18.69■□□□□ 0.58
VPS25-201ENST00000253794 ZNF530Q6P9A1 599 aaPredicted RBP18.68■□□□□ 0.58
VPS25-201ENST00000253794 HSP90AB1P08238 724 aaKnown RBP18.67■□□□□ 0.58
VPS25-201ENST00000253794 NFE2L2Q16236 605 aa18.67■□□□□ 0.58
VPS25-201ENST00000253794 FAM9BQ8IZU0 186 aa18.67■□□□□ 0.58
VPS25-201ENST00000253794 MAP3K5Q99683 1374 aa18.67■□□□□ 0.58
VPS25-201ENST00000253794 HTATSF1O43719 755 aaKnown RBP18.66■□□□□ 0.58
VPS25-201ENST00000253794 CCDC146Q8IYE0 955 aa18.66■□□□□ 0.58
VPS25-201ENST00000253794 DDX54Q8TDD1 881 aaKnown RBP18.66■□□□□ 0.58
VPS25-201ENST00000253794 C1orf141Q5JVX7 400 aa18.65■□□□□ 0.58
VPS25-201ENST00000253794 KDM6AO15550 1401 aaPredicted RBP18.65■□□□□ 0.58
VPS25-201ENST00000253794 EP400Q96L91 3159 aa18.65■□□□□ 0.58
VPS25-201ENST00000253794 GNAT3A8MTJ3 354 aa18.64■□□□□ 0.57
VPS25-201ENST00000253794 TMPOP42166 694 aaKnown RBP18.64■□□□□ 0.57
VPS25-201ENST00000253794 FAM196AQ6ZSG2 479 aa18.64■□□□□ 0.57
VPS25-201ENST00000253794 DCAF5Q96JK2 942 aa18.64■□□□□ 0.57
VPS25-201ENST00000253794 CEMIPQ8WUJ3 1361 aa18.64■□□□□ 0.57
VPS25-201ENST00000253794 MRC1P22897 1456 aa18.64■□□□□ 0.57
VPS25-201ENST00000253794 NGEFQ8N5V2 710 aa18.63■□□□□ 0.57
VPS25-201ENST00000253794 TOGARAM1Q9Y4F4 1720 aa18.63■□□□□ 0.57
VPS25-201ENST00000253794 APAF1O14727 1248 aa18.62■□□□□ 0.57
VPS25-201ENST00000253794 SCN11AQ9UI33 1791 aa18.61■□□□□ 0.57
VPS25-201ENST00000253794 NHSQ6T4R5 1651 aa18.61■□□□□ 0.57
VPS25-201ENST00000253794 DLG5Q8TDM6 1919 aa18.61■□□□□ 0.57
VPS25-201ENST00000253794 ERVV-2B6SEH9 535 aa18.6■□□□□ 0.57
VPS25-201ENST00000253794 RNMTO43148 476 aaKnown RBP18.6■□□□□ 0.57
VPS25-201ENST00000253794 LMOD3Q0VAK6 560 aa18.6■□□□□ 0.57
VPS25-201ENST00000253794 CCDC27Q2M243 656 aa18.6■□□□□ 0.57
VPS25-201ENST00000253794 DOT1LQ8TEK3 1739 aa18.6■□□□□ 0.57
VPS25-201ENST00000253794 SBF2Q86WG5 1849 aa18.59■□□□□ 0.57
VPS25-201ENST00000253794 RIPK4P57078 832 aa18.59■□□□□ 0.57
VPS25-201ENST00000253794 IL17REQ8NFR9 667 aa18.59■□□□□ 0.57
VPS25-201ENST00000253794 FAM182BQ5T319 152 aa18.58■□□□□ 0.56
VPS25-201ENST00000253794 MPRIPQ6WCQ1 1025 aa18.58■□□□□ 0.56
VPS25-201ENST00000253794 TRIM35Q9UPQ4 493 aa18.58■□□□□ 0.56
VPS25-201ENST00000253794 RTF1Q92541 710 aaKnown RBP18.57■□□□□ 0.56
VPS25-201ENST00000253794 LGR6Q9HBX8 967 aa18.57■□□□□ 0.56
VPS25-201ENST00000253794 ILDR2Q71H61 639 aa18.56■□□□□ 0.56
VPS25-201ENST00000253794 RRP7AQ9Y3A4 280 aaKnown RBP18.56■□□□□ 0.56
VPS25-201ENST00000253794 BCL11BQ9C0K0 894 aaPredicted RBP18.55■□□□□ 0.56
VPS25-201ENST00000253794 SLC52A2Q9HAB3 445 aa18.55■□□□□ 0.56
VPS25-201ENST00000253794 VIRMAQ69YN4 1812 aaKnown RBP18.55■□□□□ 0.56
VPS25-201ENST00000253794 SIPA1L3O60292 1781 aaPredicted RBP18.55■□□□□ 0.56
VPS25-201ENST00000253794 ITGB4P16144 1822 aa18.54■□□□□ 0.56
VPS25-201ENST00000253794 PRIM1P49642 420 aaKnown RBP18.53■□□□□ 0.56
VPS25-201ENST00000253794 MCM10Q7L590 875 aa18.53■□□□□ 0.56
VPS25-201ENST00000253794 ZNF521Q96K83 1311 aa18.52■□□□□ 0.56
VPS25-201ENST00000253794 TNS1Q9HBL0 1735 aaKnown RBP18.52■□□□□ 0.56
VPS25-201ENST00000253794 KCNQ2O43526 872 aa18.52■□□□□ 0.56
VPS25-201ENST00000253794 NEUROD2Q15784 382 aa18.52■□□□□ 0.56
VPS25-201ENST00000253794 WWC1Q8IX03 1113 aa18.52■□□□□ 0.56
VPS25-201ENST00000253794 ACSBG1Q96GR2 724 aa18.52■□□□□ 0.56
VPS25-201ENST00000253794 TMOD3Q9NYL9 352 aa18.52■□□□□ 0.56
VPS25-201ENST00000253794 CABP4P57796 275 aa18.51■□□□□ 0.55
VPS25-201ENST00000253794 TEFQ10587 303 aa18.51■□□□□ 0.55
VPS25-201ENST00000253794 DCTN1Q14203 1278 aa18.51■□□□□ 0.55
VPS25-201ENST00000253794 PIGBQ92521 554 aa18.51■□□□□ 0.55
VPS25-201ENST00000253794 BABAM1Q9NWV8 329 aa18.51■□□□□ 0.55
VPS25-201ENST00000253794 PAPPAQ13219 1627 aa18.51■□□□□ 0.55
VPS25-201ENST00000253794 CALD1Q05682 793 aaKnown RBP18.5■□□□□ 0.55
VPS25-201ENST00000253794 CCDC125Q86Z20 511 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms