RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 MTHFSP49914 203 aa12.99□□□□□ -0.33
MSH6-201ENST00000234420 PRDM11Q9NQV5 511 aa12.99□□□□□ -0.33
MSH6-201ENST00000234420 TXLNAP40222 546 aa12.99□□□□□ -0.33
MSH6-201ENST00000234420 PPP4R3AQ6IN85 833 aa12.99□□□□□ -0.33
MSH6-201ENST00000234420 RGS22Q8NE09 1264 aa12.99□□□□□ -0.33
MSH6-201ENST00000234420 DIAPH1O60610 1272 aaKnown RBP12.99□□□□□ -0.33
MSH6-201ENST00000234420 DESP17661 470 aa12.99□□□□□ -0.33
MSH6-201ENST00000234420 CCDC158Q5M9N0 1113 aa12.99□□□□□ -0.33
MSH6-201ENST00000234420 SMG6Q86US8 1419 aaKnown RBP12.98□□□□□ -0.33
MSH6-201ENST00000234420 TMCO5BA8MYB1 307 aa12.98□□□□□ -0.33
MSH6-201ENST00000234420 PTPN14Q15678 1187 aa12.98□□□□□ -0.33
MSH6-201ENST00000234420 FEZ1Q99689 392 aa12.98□□□□□ -0.33
MSH6-201ENST00000234420 GBP3Q9H0R5 595 aa12.98□□□□□ -0.33
MSH6-201ENST00000234420 LUC7LQ9NQ29 371 aaKnown RBP12.98□□□□□ -0.33
MSH6-201ENST00000234420 MYCP01106 439 aaPredicted RBP12.98□□□□□ -0.33
MSH6-201ENST00000234420 ARL1P40616 181 aaPredicted RBP12.98□□□□□ -0.33
MSH6-201ENST00000234420 CCDC96Q2M329 555 aa12.98□□□□□ -0.33
MSH6-201ENST00000234420 STAMBPO95630 424 aa12.98□□□□□ -0.33
MSH6-201ENST00000234420 UBTFL1P0CB47 393 aaPredicted RBP12.98□□□□□ -0.33
MSH6-201ENST00000234420 CPSF2Q9P2I0 782 aaKnown RBP12.98□□□□□ -0.33
MSH6-201ENST00000234420 CCDC175P0C221 793 aa12.98□□□□□ -0.33
MSH6-201ENST00000234420 VGLL3A8MV65 326 aa12.97□□□□□ -0.33
MSH6-201ENST00000234420 SARNPP82979 210 aaKnown RBP12.97□□□□□ -0.33
MSH6-201ENST00000234420 CCDC57Q2TAC2 916 aa12.97□□□□□ -0.33
MSH6-201ENST00000234420 F8W031 263 aaPredicted RBP12.97□□□□□ -0.33
MSH6-201ENST00000234420 DPH6Q7L8W6 267 aa12.97□□□□□ -0.33
MSH6-201ENST00000234420 KIAA1328Q86T90 577 aa12.97□□□□□ -0.33
MSH6-201ENST00000234420 URI1O94763 535 aaPredicted RBP12.97□□□□□ -0.33
MSH6-201ENST00000234420 BMS1Q14692 1282 aaKnown RBP12.97□□□□□ -0.33
MSH6-201ENST00000234420 JAKMIP3Q5VZ66 844 aa12.97□□□□□ -0.33
MSH6-201ENST00000234420 C8orf37Q96NL8 207 aa12.97□□□□□ -0.33
MSH6-201ENST00000234420 DDX19BQ9UMR2 479 aa12.96□□□□□ -0.33
MSH6-201ENST00000234420 VGFO15240 615 aaPredicted RBP12.96□□□□□ -0.33
MSH6-201ENST00000234420 CCDC148Q8NFR7 591 aa12.96□□□□□ -0.33
MSH6-201ENST00000234420 GGNBP2Q9H3C7 697 aa12.96□□□□□ -0.33
MSH6-201ENST00000234420 C1orf115Q9H7X2 142 aa12.96□□□□□ -0.33
MSH6-201ENST00000234420 C6orf229H3BNL8 230 aa12.96□□□□□ -0.33
MSH6-201ENST00000234420 NEK4P51957 841 aa12.96□□□□□ -0.33
MSH6-201ENST00000234420 PROCA1Q8NCQ7 364 aaPredicted RBP12.96□□□□□ -0.33
MSH6-201ENST00000234420 SMARCC1Q92922 1105 aaPredicted RBP12.96□□□□□ -0.33
MSH6-201ENST00000234420 TMX1Q9H3N1 280 aa12.96□□□□□ -0.33
MSH6-201ENST00000234420 MAP9Q49MG5 647 aa12.96□□□□□ -0.34
MSH6-201ENST00000234420 MINDY4BA8MYZ0 360 aa12.96□□□□□ -0.34
MSH6-201ENST00000234420 IFFO1Q0D2I5 559 aa12.96□□□□□ -0.34
MSH6-201ENST00000234420 GOPCQ9HD26 462 aa12.96□□□□□ -0.34
MSH6-201ENST00000234420 CEP57Q86XR8 500 aa12.95□□□□□ -0.34
MSH6-201ENST00000234420 WDR66Q8TBY9 1149 aa12.95□□□□□ -0.34
MSH6-201ENST00000234420 ACSBG1Q96GR2 724 aa12.95□□□□□ -0.34
MSH6-201ENST00000234420 DDX23Q9BUQ8 820 aaKnown RBP12.95□□□□□ -0.34
MSH6-201ENST00000234420 ZBED9Q6R2W3 1325 aa12.95□□□□□ -0.34
MSH6-201ENST00000234420 ARHGAP29Q52LW3 1261 aa12.95□□□□□ -0.34
MSH6-201ENST00000234420 CARMIL1Q5VZK9 1371 aa12.95□□□□□ -0.34
MSH6-201ENST00000234420 CASQ1P31415 396 aa12.95□□□□□ -0.34
MSH6-201ENST00000234420 LUZP1Q86V48 1076 aa12.95□□□□□ -0.34
MSH6-201ENST00000234420 PUF60Q9UHX1 559 aaKnown RBP12.95□□□□□ -0.34
MSH6-201ENST00000234420 SAMM50Q9Y512 469 aa12.95□□□□□ -0.34
MSH6-201ENST00000234420 KIF18AQ8NI77 898 aa12.95□□□□□ -0.34
MSH6-201ENST00000234420 TERF1P54274 439 aa12.95□□□□□ -0.34
MSH6-201ENST00000234420 KIF20AO95235 890 aa12.94□□□□□ -0.34
MSH6-201ENST00000234420 STK38Q15208 465 aa12.94□□□□□ -0.34
MSH6-201ENST00000234420 EPB41L2O43491 1005 aaKnown RBP12.94□□□□□ -0.34
MSH6-201ENST00000234420 MMRN2Q9H8L6 949 aa12.94□□□□□ -0.34
MSH6-201ENST00000234420 GJA3Q9Y6H8 435 aa12.94□□□□□ -0.34
MSH6-201ENST00000234420 ANKRD30AQ9BXX3 1397 aa12.94□□□□□ -0.34
MSH6-201ENST00000234420 KIF7Q2M1P5 1343 aa12.94□□□□□ -0.34
MSH6-201ENST00000234420 SMC1AQ14683 1233 aaKnown RBP12.94□□□□□ -0.34
MSH6-201ENST00000234420 MICALL1Q8N3F8 863 aa12.94□□□□□ -0.34
MSH6-201ENST00000234420 FERMT2Q96AC1 680 aa12.94□□□□□ -0.34
MSH6-201ENST00000234420 RSPH14Q9UHP6 348 aa12.94□□□□□ -0.34
MSH6-201ENST00000234420 ERC2O15083 957 aa12.93□□□□□ -0.34
MSH6-201ENST00000234420 CBFA2T2O43439 604 aa12.93□□□□□ -0.34
MSH6-201ENST00000234420 PHLDB1Q86UU1 1377 aa12.93□□□□□ -0.34
MSH6-201ENST00000234420 MACROD2A1Z1Q3 448 aa12.93□□□□□ -0.34
MSH6-201ENST00000234420 CTR9Q6PD62 1173 aa12.93□□□□□ -0.34
MSH6-201ENST00000234420 DZIP1LQ8IYY4 767 aaKnown RBP12.93□□□□□ -0.34
MSH6-201ENST00000234420 SOGA1O94964 1423 aa12.93□□□□□ -0.34
MSH6-201ENST00000234420 CDC45O75419 566 aa12.93□□□□□ -0.34
MSH6-201ENST00000234420 VAT1LQ9HCJ6 419 aa12.93□□□□□ -0.34
MSH6-201ENST00000234420 UBAP1LF5GYI3 381 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 PIP4K2AP48426 406 aaPredicted RBP12.92□□□□□ -0.34
MSH6-201ENST00000234420 BIRC2Q13490 618 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 TNIP1Q15025 636 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 CTNNBL1Q8WYA6 563 aaPredicted RBP12.92□□□□□ -0.34
MSH6-201ENST00000234420 TAF4BQ92750 862 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 SUDS3Q9H7L9 328 aaPredicted RBP12.92□□□□□ -0.34
MSH6-201ENST00000234420 NBPF1Q3BBV0 1214 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 TTC31Q49AM3 519 aaPredicted RBP12.92□□□□□ -0.34
MSH6-201ENST00000234420 CKAP2LQ8IYA6 745 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 NAP1L3Q99457 506 aaPredicted RBP12.92□□□□□ -0.34
MSH6-201ENST00000234420 SYCE3A1L190 88 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 ME1P48163 572 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 FBF1Q8TES7 1133 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 SIRT1Q96EB6 747 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 C16orf45Q96MC5 204 aaPredicted RBP12.92□□□□□ -0.34
MSH6-201ENST00000234420 PAIP2Q9BPZ3 127 aaKnown RBP12.92□□□□□ -0.34
MSH6-201ENST00000234420 TAF12Q16514 161 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 TXLNBQ8N3L3 684 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 ZNF396Q96N95 335 aaPredicted RBP12.92□□□□□ -0.34
MSH6-201ENST00000234420 MKNK2Q9HBH9 465 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 SPECC1Q5M775 1068 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms