RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 RBM33Q96EV2 1170 aaKnown RBP24.3■■□□□ 1.48
YBX3-201ENST00000228251 NUTM2GQ5VZR2 741 aa24.29■■□□□ 1.48
YBX3-201ENST00000228251 SLIT3O75094 1523 aa24.29■■□□□ 1.48
YBX3-201ENST00000228251 HTATSF1O43719 755 aaKnown RBP24.28■■□□□ 1.48
YBX3-201ENST00000228251 DDRGK1Q96HY6 314 aa24.28■■□□□ 1.48
YBX3-201ENST00000228251 GAS2L2Q8NHY3 880 aa24.27■■□□□ 1.48
YBX3-201ENST00000228251 API5Q9BZZ5 524 aaKnown RBP24.27■■□□□ 1.48
YBX3-201ENST00000228251 KIF1AQ12756 1690 aa24.27■■□□□ 1.48
YBX3-201ENST00000228251 KRT24Q2M2I5 525 aa24.26■■□□□ 1.47
YBX3-201ENST00000228251 HAP1P54257 671 aaPredicted RBP24.26■■□□□ 1.47
YBX3-201ENST00000228251 CHMP4BQ9H444 224 aaKnown RBP24.26■■□□□ 1.47
YBX3-201ENST00000228251 RGPD2P0DJD1 1756 aa24.26■■□□□ 1.47
YBX3-201ENST00000228251 MSH6P52701 1360 aa24.24■■□□□ 1.47
YBX3-201ENST00000228251 FAM208AQ9UK61 1670 aaKnown RBP24.24■■□□□ 1.47
YBX3-201ENST00000228251 IP6K1Q92551 441 aa24.24■■□□□ 1.47
YBX3-201ENST00000228251 SEC24BO95487 1268 aa24.23■■□□□ 1.47
YBX3-201ENST00000228251 ESCO1Q5FWF5 840 aa24.23■■□□□ 1.47
YBX3-201ENST00000228251 MST1RQ04912 1400 aa24.22■■□□□ 1.47
YBX3-201ENST00000228251 STRCP1A6NGW2 1772 aa24.22■■□□□ 1.47
YBX3-201ENST00000228251 MED1Q15648 1581 aaPredicted RBP24.22■■□□□ 1.47
YBX3-201ENST00000228251 CAMTA1Q9Y6Y1 1673 aa24.22■■□□□ 1.47
YBX3-201ENST00000228251 CACNA1FO60840 1977 aa24.22■■□□□ 1.47
YBX3-201ENST00000228251 NUCB1Q02818 461 aa24.21■■□□□ 1.47
YBX3-201ENST00000228251 INTS3Q68E01 1043 aaKnown RBP24.21■■□□□ 1.47
YBX3-201ENST00000228251 NCAPD2Q15021 1401 aa24.21■■□□□ 1.47
YBX3-201ENST00000228251 ALS2Q96Q42 1657 aa24.2■■□□□ 1.46
YBX3-201ENST00000228251 RTF1Q92541 710 aaKnown RBP24.2■■□□□ 1.46
YBX3-201ENST00000228251 SIRT2Q8IXJ6 389 aa24.19■■□□□ 1.46
YBX3-201ENST00000228251 MAP3K5Q99683 1374 aa24.19■■□□□ 1.46
YBX3-201ENST00000228251 LMO7Q8WWI1 1683 aa24.19■■□□□ 1.46
YBX3-201ENST00000228251 N4BP2Q86UW6 1770 aaPredicted RBP24.19■■□□□ 1.46
YBX3-201ENST00000228251 PSME1Q06323 249 aa24.19■■□□□ 1.46
YBX3-201ENST00000228251 ORAI2Q96SN7 254 aa24.19■■□□□ 1.46
YBX3-201ENST00000228251 PTPRCP08575 1304 aa24.19■■□□□ 1.46
YBX3-201ENST00000228251 C1orf167Q5SNV9 1468 aa24.18■■□□□ 1.46
YBX3-201ENST00000228251 KCNH5Q8NCM2 988 aa24.18■■□□□ 1.46
YBX3-201ENST00000228251 GNAT3A8MTJ3 354 aa24.17■■□□□ 1.46
YBX3-201ENST00000228251 MIS18AQ9NYP9 233 aa24.16■■□□□ 1.46
YBX3-201ENST00000228251 TSPYL4Q9UJ04 414 aa24.16■■□□□ 1.46
YBX3-201ENST00000228251 ATP10DQ9P241 1426 aa24.15■■□□□ 1.46
YBX3-201ENST00000228251 C14orf37Q86TY3 774 aa24.15■■□□□ 1.46
YBX3-201ENST00000228251 IL17REQ8NFR9 667 aa24.15■■□□□ 1.46
YBX3-201ENST00000228251 BABAM1Q9NWV8 329 aa24.15■■□□□ 1.46
YBX3-201ENST00000228251 KDM3BQ7LBC6 1761 aa24.15■■□□□ 1.46
YBX3-201ENST00000228251 GCC1Q96CN9 775 aa24.14■■□□□ 1.46
YBX3-201ENST00000228251 C1orf115Q9H7X2 142 aa24.14■■□□□ 1.46
YBX3-201ENST00000228251 CEMIPQ8WUJ3 1361 aa24.14■■□□□ 1.45
YBX3-201ENST00000228251 CHD1LQ86WJ1 897 aa24.13■■□□□ 1.45
YBX3-201ENST00000228251 LTV1Q96GA3 475 aaPredicted RBP24.13■■□□□ 1.45
YBX3-201ENST00000228251 NBPF6Q5VWK0 638 aa24.12■■□□□ 1.45
YBX3-201ENST00000228251 ARHGEF25Q86VW2 580 aa24.12■■□□□ 1.45
YBX3-201ENST00000228251 NBPF4Q96M43 638 aa24.12■■□□□ 1.45
YBX3-201ENST00000228251 SOS1Q07889 1333 aaPredicted RBP24.12■■□□□ 1.45
YBX3-201ENST00000228251 PROSER2Q86WR7 435 aaPredicted RBP24.11■■□□□ 1.45
YBX3-201ENST00000228251 DCCP43146 1447 aa24.11■■□□□ 1.45
YBX3-201ENST00000228251 USHBP1Q8N6Y0 703 aa24.1■■□□□ 1.45
YBX3-201ENST00000228251 C19orf44Q9H6X5 657 aa24.1■■□□□ 1.45
YBX3-201ENST00000228251 RGPD5Q99666 1765 aa24.1■■□□□ 1.45
YBX3-201ENST00000228251 NCOA3Q9Y6Q9 1424 aa24.09■■□□□ 1.45
YBX3-201ENST00000228251 GCP02774 474 aa24.09■■□□□ 1.45
YBX3-201ENST00000228251 TBC1D32Q96NH3 1257 aa24.09■■□□□ 1.45
YBX3-201ENST00000228251 SLC4A2P04920 1241 aa24.08■■□□□ 1.45
YBX3-201ENST00000228251 LNPKQ9C0E8 428 aa24.08■■□□□ 1.44
YBX3-201ENST00000228251 CRYBG1Q9Y4K1 1723 aa24.07■■□□□ 1.44
YBX3-201ENST00000228251 G2E3Q7L622 706 aa24.07■■□□□ 1.44
YBX3-201ENST00000228251 ADAMTS7Q9UKP4 1686 aa24.07■■□□□ 1.44
YBX3-201ENST00000228251 LMTK3Q96Q04 1460 aa24.07■■□□□ 1.44
YBX3-201ENST00000228251 TAF7Q15545 349 aaPredicted RBP24.06■■□□□ 1.44
YBX3-201ENST00000228251 XPCQ01831 940 aaPredicted RBP24.05■■□□□ 1.44
YBX3-201ENST00000228251 KRT28Q7Z3Y7 464 aa24.05■■□□□ 1.44
YBX3-201ENST00000228251 ANKRD44Q8N8A2 993 aa24.05■■□□□ 1.44
YBX3-201ENST00000228251 SIPA1L3O60292 1781 aaPredicted RBP24.04■■□□□ 1.44
YBX3-201ENST00000228251 XIRP1Q702N8 1843 aaKnown RBP24.04■■□□□ 1.44
YBX3-201ENST00000228251 DCTPP1Q9H773 170 aa24.04■■□□□ 1.44
YBX3-201ENST00000228251 SLC4A3P48751 1232 aa24.03■■□□□ 1.44
YBX3-201ENST00000228251 COL18A1P39060 1754 aa24.03■■□□□ 1.44
YBX3-201ENST00000228251 TMEM94Q12767 1356 aa24.03■■□□□ 1.44
YBX3-201ENST00000228251 OVOS2A0A0G2JMS6 1433 aa24.03■■□□□ 1.44
YBX3-201ENST00000228251 BMP2KLQ5H9B9 411 aa24.02■■□□□ 1.44
YBX3-201ENST00000228251 ANKRD45Q5TZF3 282 aa24.02■■□□□ 1.44
YBX3-201ENST00000228251 RPAP2Q8IXW5 612 aaPredicted RBP24.02■■□□□ 1.44
YBX3-201ENST00000228251 PXDNQ92626 1479 aa24.02■■□□□ 1.44
YBX3-201ENST00000228251 CEP85Q6P2H3 762 aa24.01■■□□□ 1.43
YBX3-201ENST00000228251 LRRC59Q96AG4 307 aaKnown RBP24.01■■□□□ 1.43
YBX3-201ENST00000228251 PXDNLA1KZ92 1463 aa24.01■■□□□ 1.43
YBX3-201ENST00000228251 MEIS3Q99687 375 aa24.01■■□□□ 1.43
YBX3-201ENST00000228251 NBR1Q14596 966 aa24■■□□□ 1.43
YBX3-201ENST00000228251 CCDC30Q5VVM6 783 aa24■■□□□ 1.43
YBX3-201ENST00000228251 CCT4P50991 539 aaKnown RBP23.99■■□□□ 1.43
YBX3-201ENST00000228251 UPF2Q9HAU5 1272 aaKnown RBP23.99■■□□□ 1.43
YBX3-201ENST00000228251 STK31Q9BXU1 1019 aa23.98■■□□□ 1.43
YBX3-201ENST00000228251 AXIN2Q9Y2T1 843 aa23.98■■□□□ 1.43
YBX3-201ENST00000228251 ABCC6O95255 1503 aa23.97■■□□□ 1.43
YBX3-201ENST00000228251 AKAP4Q5JQC9 854 aa23.97■■□□□ 1.43
YBX3-201ENST00000228251 ANKRD24Q8TF21 1146 aa23.97■■□□□ 1.43
YBX3-201ENST00000228251 LGR6Q9HBX8 967 aa23.97■■□□□ 1.43
YBX3-201ENST00000228251 F6X3S4 739 aa23.96■■□□□ 1.43
YBX3-201ENST00000228251 FLIIQ13045 1269 aa23.96■■□□□ 1.43
YBX3-201ENST00000228251 AMOTQ4VCS5 1084 aa23.96■■□□□ 1.43
YBX3-201ENST00000228251 PLEKHO1Q53GL0 409 aaPredicted RBP23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms