RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 NCBP3Q53F19 620 aaKnown RBP13.31□□□□□ -0.28
USP28-201ENST00000003302 ZDHHC9Q9Y397 364 aa13.31□□□□□ -0.28
USP28-201ENST00000003302 K7ELQ4 463 aaPredicted RBP13.31□□□□□ -0.28
USP28-201ENST00000003302 HSP90AA1P07900 732 aaKnown RBP13.31□□□□□ -0.28
USP28-201ENST00000003302 COG3Q96JB2 828 aa13.31□□□□□ -0.28
USP28-201ENST00000003302 SNX21Q969T3 373 aa13.31□□□□□ -0.28
USP28-201ENST00000003302 SLC4A2P04920 1241 aa13.3□□□□□ -0.28
USP28-201ENST00000003302 DCTPP1Q9H773 170 aa13.3□□□□□ -0.28
USP28-201ENST00000003302 MAP3K19Q56UN5 1328 aa13.3□□□□□ -0.28
USP28-201ENST00000003302 BRPF1P55201 1214 aaPredicted RBP13.3□□□□□ -0.28
USP28-201ENST00000003302 UNC5CLQ8IV45 518 aa13.3□□□□□ -0.28
USP28-201ENST00000003302 PALD1Q9ULE6 856 aa13.3□□□□□ -0.28
USP28-201ENST00000003302 PEAK1Q9H792 1746 aa13.3□□□□□ -0.28
USP28-201ENST00000003302 LTKP29376 864 aa13.3□□□□□ -0.28
USP28-201ENST00000003302 TTC22Q5TAA0 569 aa13.3□□□□□ -0.28
USP28-201ENST00000003302 LARP6Q9BRS8 491 aaKnown RBP13.3□□□□□ -0.28
USP28-201ENST00000003302 USP26Q9BXU7 913 aa13.3□□□□□ -0.28
USP28-201ENST00000003302 CCDC61Q9Y6R9 512 aa13.3□□□□□ -0.28
USP28-201ENST00000003302 RTL1A6NKG5 1358 aa13.29□□□□□ -0.28
USP28-201ENST00000003302 TPRNQ4KMQ1 711 aa13.29□□□□□ -0.28
USP28-201ENST00000003302 GCC1Q96CN9 775 aa13.29□□□□□ -0.28
USP28-201ENST00000003302 ACEP12821 1306 aa13.29□□□□□ -0.28
USP28-201ENST00000003302 KIF13AQ9H1H9 1805 aa13.29□□□□□ -0.28
USP28-201ENST00000003302 PNMA6EA0A0J9YXQ4 647 aa13.29□□□□□ -0.28
USP28-201ENST00000003302 MTHFSDQ2M296 383 aaKnown RBP13.29□□□□□ -0.28
USP28-201ENST00000003302 BAG4O95429 457 aaKnown RBP13.28□□□□□ -0.28
USP28-201ENST00000003302 MCTP1Q6DN14 999 aa13.28□□□□□ -0.28
USP28-201ENST00000003302 ATP7BP35670 1465 aa13.27□□□□□ -0.28
USP28-201ENST00000003302 EDC4Q6P2E9 1401 aaKnown RBP13.27□□□□□ -0.28
USP28-201ENST00000003302 SETD1BQ9UPS6 1966 aaKnown RBP13.27□□□□□ -0.28
USP28-201ENST00000003302 CHL1O00533 1208 aa13.27□□□□□ -0.28
USP28-201ENST00000003302 ARHGAP45Q92619 1136 aa13.27□□□□□ -0.28
USP28-201ENST00000003302 COL9A3Q14050 684 aaPredicted RBP13.27□□□□□ -0.29
USP28-201ENST00000003302 CDK12Q9NYV4 1490 aaPredicted RBP13.27□□□□□ -0.29
USP28-201ENST00000003302 MPNDQ8N594 471 aa13.27□□□□□ -0.29
USP28-201ENST00000003302 USHBP1Q8N6Y0 703 aa13.27□□□□□ -0.29
USP28-201ENST00000003302 CDC45O75419 566 aa13.26□□□□□ -0.29
USP28-201ENST00000003302 MAP4K4O95819 1239 aaPredicted RBP13.26□□□□□ -0.29
USP28-201ENST00000003302 ANKRD44Q8N8A2 993 aa13.26□□□□□ -0.29
USP28-201ENST00000003302 L1TD1Q5T7N2 865 aaKnown RBP13.26□□□□□ -0.29
USP28-201ENST00000003302 INTS3Q68E01 1043 aaKnown RBP13.26□□□□□ -0.29
USP28-201ENST00000003302 ZBTB7CA1YPR0 619 aa13.25□□□□□ -0.29
USP28-201ENST00000003302 GPT2Q8TD30 523 aa13.25□□□□□ -0.29
USP28-201ENST00000003302 TTC21BQ7Z4L5 1316 aa13.25□□□□□ -0.29
USP28-201ENST00000003302 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.25□□□□□ -0.29
USP28-201ENST00000003302 CAVIN1Q6NZI2 390 aaKnown RBP13.25□□□□□ -0.29
USP28-201ENST00000003302 NAP1L5Q96NT1 182 aaPredicted RBP13.25□□□□□ -0.29
USP28-201ENST00000003302 GDPD2Q9HCC8 539 aa13.25□□□□□ -0.29
USP28-201ENST00000003302 ANXA1P04083 346 aa13.24□□□□□ -0.29
USP28-201ENST00000003302 NCLP19338 710 aaKnown RBP13.24□□□□□ -0.29
USP28-201ENST00000003302 LTV1Q96GA3 475 aaPredicted RBP13.24□□□□□ -0.29
USP28-201ENST00000003302 C3P01024 1663 aa13.24□□□□□ -0.29
USP28-201ENST00000003302 CEP170BQ9Y4F5 1589 aaPredicted RBP13.24□□□□□ -0.29
USP28-201ENST00000003302 MRE11P49959 708 aa13.24□□□□□ -0.29
USP28-201ENST00000003302 UPF3BQ9BZI7 483 aaKnown RBP13.24□□□□□ -0.29
USP28-201ENST00000003302 CRB1P82279 1406 aa13.23□□□□□ -0.29
USP28-201ENST00000003302 DDX49Q9Y6V7 483 aaKnown RBP13.23□□□□□ -0.29
USP28-201ENST00000003302 IL1RAPL2Q9NP60 686 aa13.23□□□□□ -0.29
USP28-201ENST00000003302 ESPNB1AK53 854 aa13.22□□□□□ -0.29
USP28-201ENST00000003302 LMBRD1Q9NUN5 540 aa13.22□□□□□ -0.29
USP28-201ENST00000003302 TCHHQ07283 1943 aa13.22□□□□□ -0.29
USP28-201ENST00000003302 DDX11L8A8MPP1 907 aa13.22□□□□□ -0.29
USP28-201ENST00000003302 CYP2E1P05181 493 aaPredicted RBP13.22□□□□□ -0.29
USP28-201ENST00000003302 EYA1Q99502 592 aa13.22□□□□□ -0.29
USP28-201ENST00000003302 RGPD8O14715 1765 aaPredicted RBP13.22□□□□□ -0.29
USP28-201ENST00000003302 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP28-201ENST00000003302 RBSNQ9H1K0 784 aa13.22□□□□□ -0.29
USP28-201ENST00000003302 PRPF40AO75400 957 aaKnown RBP13.22□□□□□ -0.29
USP28-201ENST00000003302 PRIM1P49642 420 aaKnown RBP13.22□□□□□ -0.29
USP28-201ENST00000003302 API5Q9BZZ5 524 aaKnown RBP13.22□□□□□ -0.29
USP28-201ENST00000003302 PHAXQ9H814 394 aaKnown RBP13.21□□□□□ -0.29
USP28-201ENST00000003302 MON2Q7Z3U7 1717 aa13.21□□□□□ -0.29
USP28-201ENST00000003302 CLCN1P35523 988 aa13.21□□□□□ -0.29
USP28-201ENST00000003302 PTPRUQ92729 1446 aa13.21□□□□□ -0.29
USP28-201ENST00000003302 PNNQ9H307 717 aaKnown RBP13.21□□□□□ -0.3
USP28-201ENST00000003302 AATKQ6ZMQ8 1374 aa13.21□□□□□ -0.3
USP28-201ENST00000003302 TMEM63CQ9P1W3 806 aa13.21□□□□□ -0.3
USP28-201ENST00000003302 PDE1AP54750 535 aa13.2□□□□□ -0.3
USP28-201ENST00000003302 TSPYL4Q9UJ04 414 aa13.2□□□□□ -0.3
USP28-201ENST00000003302 CPA1P15085 419 aa13.2□□□□□ -0.3
USP28-201ENST00000003302 DDX54Q8TDD1 881 aaKnown RBP13.2□□□□□ -0.3
USP28-201ENST00000003302 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.2□□□□□ -0.3
USP28-201ENST00000003302 JARID2Q92833 1246 aaPredicted RBP13.19□□□□□ -0.3
USP28-201ENST00000003302 KCNQ3O43525 872 aa13.19□□□□□ -0.3
USP28-201ENST00000003302 RNF214Q8ND24 703 aa13.19□□□□□ -0.3
USP28-201ENST00000003302 OVOS2A0A0J9YW53 1432 aa13.18□□□□□ -0.3
USP28-201ENST00000003302 OVOS2Q6IE36 1432 aa13.18□□□□□ -0.3
USP28-201ENST00000003302 ADAMTS13Q76LX8 1427 aa13.18□□□□□ -0.3
USP28-201ENST00000003302 NEK4P51957 841 aa13.18□□□□□ -0.3
USP28-201ENST00000003302 ZSCAN23Q3MJ62 389 aa13.18□□□□□ -0.3
USP28-201ENST00000003302 SPATA31D1Q6ZQQ2 1576 aa13.18□□□□□ -0.3
USP28-201ENST00000003302 NUTM1Q86Y26 1132 aa13.18□□□□□ -0.3
USP28-201ENST00000003302 IL17REQ8NFR9 667 aa13.18□□□□□ -0.3
USP28-201ENST00000003302 RILPL2Q969X0 211 aa13.18□□□□□ -0.3
USP28-201ENST00000003302 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.18□□□□□ -0.3
USP28-201ENST00000003302 AKAP12Q02952 1782 aa13.17□□□□□ -0.3
USP28-201ENST00000003302 GBP4Q96PP9 640 aa13.17□□□□□ -0.3
USP28-201ENST00000003302 LRRFIP2Q9Y608 721 aaKnown RBP13.17□□□□□ -0.3
USP28-201ENST00000003302 SALL3Q9BXA9 1300 aa13.17□□□□□ -0.3
USP28-201ENST00000003302 NASPP49321 788 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms