RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 COL28A1Q2UY09 1125 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 PHF19Q5T6S3 580 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 RANBP10Q6VN20 620 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 ZNF761Q86XN6 746 aaPredicted RBP16.43■□□□□ 0.22
SREBF1-219ENST00000580540 SLC37A2Q8TED4 501 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 ATG4AQ8WYN0 398 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 TTC25Q96NG3 672 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 ALS2CR12Q96Q35 445 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 TMEM121Q9BTD3 319 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 ZMYND15Q9H091 742 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 UGT1A7Q9HAW7 530 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 UGT1A10Q9HAW8 530 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 UGT1A8Q9HAW9 530 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 TBC1D29Q9UFV1 150 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 TMPRSS11EQ9UL52 423 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 LHX6Q9UPM6 363 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 DNAJC16Q9Y2G8 782 aa16.43■□□□□ 0.22
SREBF1-219ENST00000580540 PKD1L2Q7Z442 2459 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 ZZEF1O43149 2961 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 A0A1W2PNU3 283 aaPredicted RBP16.42■□□□□ 0.22
SREBF1-219ENST00000580540 C2orf81A6NN90 581 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 TNFSF15O95150 251 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 LPOP22079 712 aaPredicted RBP16.42■□□□□ 0.22
SREBF1-219ENST00000580540 EIF2S3P41091 472 aaKnown RBP16.42■□□□□ 0.22
SREBF1-219ENST00000580540 GDF10P55107 478 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 TMEM115Q12893 351 aaPredicted RBP16.42■□□□□ 0.22
SREBF1-219ENST00000580540 PARP6Q2NL67 630 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 KHDC1Q4VXA5 237 aaKnown RBP16.42■□□□□ 0.22
SREBF1-219ENST00000580540 NKAIN2Q5VXU1 208 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 RAB11FIP2Q7L804 512 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 PIM3Q86V86 326 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 LRRTM4Q86VH4 590 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 FBXO39Q8N4B4 442 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 OR4K2Q8NGD2 314 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 SLC35B2Q8TB61 432 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 ZNF578Q96N58 590 aaPredicted RBP16.42■□□□□ 0.22
SREBF1-219ENST00000580540 PPP1R2P1Q96PQ5 205 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 VPS35Q96QK1 796 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 SLC38A3Q99624 504 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 PRDM8Q9NQV8 689 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 THSD1Q9NS62 852 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 KCNK4Q9NYG8 393 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.42■□□□□ 0.22
SREBF1-219ENST00000580540 KCTD3Q9Y597 815 aa16.42■□□□□ 0.22
SREBF1-219ENST00000580540 ZFC3H1O60293 1989 aaKnown RBP16.42■□□□□ 0.22
SREBF1-219ENST00000580540 COL27A1Q8IZC6 1860 aaPredicted RBP16.42■□□□□ 0.22
SREBF1-219ENST00000580540 GPR89AB7ZAQ6 455 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 KMOO15229 486 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 GPR39O43194 453 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 VEGFDO43915 354 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 METTL18O95568 372 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 CPNE6O95741 557 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 GPR89BP0CG08 455 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 HGFP14210 728 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 ITPKBP27987 946 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 GPR3P46089 330 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 CCZ1BP86790 482 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 CCZ1P86791 482 aaPredicted RBP16.41■□□□□ 0.22
SREBF1-219ENST00000580540 TMPRSS15P98073 1019 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 NFATC2Q13469 925 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 SNX1Q13596 522 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 TAF1AQ15573 450 aaPredicted RBP16.41■□□□□ 0.22
SREBF1-219ENST00000580540 MEI1Q5TIA1 1274 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 IYDQ6PHW0 289 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 ZNF438Q7Z4V0 828 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 SLC13A5Q86YT5 568 aaPredicted RBP16.41■□□□□ 0.22
SREBF1-219ENST00000580540 TRAPPC5Q8IUR0 188 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 SFRP1Q8N474 314 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 SNIP1Q8TAD8 396 aaKnown RBP16.41■□□□□ 0.22
SREBF1-219ENST00000580540 ZNF398Q8TD17 642 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 C1orf54Q8WWF1 131 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 LIN37Q96GY3 246 aaPredicted RBP16.41■□□□□ 0.22
SREBF1-219ENST00000580540 AHCYL2Q96HN2 611 aaKnown RBP16.41■□□□□ 0.22
SREBF1-219ENST00000580540 SLC46A1Q96NT5 459 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 SEMA6CQ9H3T2 930 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 STN1Q9H668 368 aaKnown RBP16.41■□□□□ 0.22
SREBF1-219ENST00000580540 WDR70Q9NW82 654 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 SLC23A2Q9UGH3 650 aa16.41■□□□□ 0.22
SREBF1-219ENST00000580540 A0A087WV48 116 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 PDZK1P1A8MUH7 402 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 PLD2O14939 933 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 CHUKO15111 745 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 PPFIA2O75334 1257 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 CRTAMO95727 393 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 IFNB1P01574 187 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 JMJD7P0C870 316 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 SLC2A4P14672 509 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 ZNF7P17097 686 aaPredicted RBP16.4■□□□□ 0.22
SREBF1-219ENST00000580540 TPH1P17752 444 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 CD1CP29017 333 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 CCKBRP32239 447 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 ABCG1P45844 678 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 MAPK9P45984 424 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 PCBP4P57723 403 aaKnown RBP16.4■□□□□ 0.22
SREBF1-219ENST00000580540 HHEXQ03014 270 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 ITGA9Q13797 1035 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 SEPT7Q16181 437 aaKnown RBP16.4■□□□□ 0.22
SREBF1-219ENST00000580540 LDLRAP1Q5SW96 308 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 TMPRSS9Q7Z410 1059 aa16.4■□□□□ 0.22
SREBF1-219ENST00000580540 SLC9B2Q86UD5 537 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms