RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 GLIS1Q8NBF1 620 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 AVL9Q8NBF6 648 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 GPR156Q8NFN8 814 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 OR13C4Q8NGS5 318 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 CCL4L1Q8NHW4 92 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 MAPK15Q8TD08 544 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 ZNF398Q8TD17 642 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 HEXDCQ8WVB3 486 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 PEX13Q92968 403 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLK3-224ENST00000568605 ZNF514Q96K75 400 aaPredicted RBP12.84□□□□□ -0.35
CLK3-224ENST00000568605 RANBP9Q96S59 729 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 TIMM29Q9BSF4 260 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 ARFGAP3Q9NP61 516 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 CASS4Q9NQ75 786 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 NLE1Q9NVX2 485 aaPredicted RBP12.84□□□□□ -0.35
CLK3-224ENST00000568605 RNF14Q9UBS8 474 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 CEP295Q9C0D2 2601 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 LY6G6EA0A0G2JKS1 128 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 KLHL33A6NCF5 533 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 H7C0S8 307 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 CHUKO15111 745 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 ZNF185O15231 689 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 FUCA1P04066 466 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 GLB1P16278 677 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 TPH1P17752 444 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 MC4RP32245 332 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 VPS41P49754 854 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 TMPRSS15P98073 1019 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 TMEM115Q12893 351 aaPredicted RBP12.83□□□□□ -0.36
CLK3-224ENST00000568605 GPS1Q13098 491 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 MSLNQ13421 630 aaPredicted RBP12.83□□□□□ -0.36
CLK3-224ENST00000568605 CERCAMQ5T4B2 595 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 GPRC6AQ5T6X5 926 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 TTC27Q6P3X3 843 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 OGFOD3Q6PK18 319 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 SNX20Q7Z614 316 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 PRUNE1Q86TP1 453 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 PTCD2Q8WV60 388 aaKnown RBP12.83□□□□□ -0.36
CLK3-224ENST00000568605 DCUN1D1Q96GG9 259 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 DNAJC1Q96KC8 554 aaKnown RBP12.83□□□□□ -0.36
CLK3-224ENST00000568605 CAPZA3Q96KX2 299 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 DEPDC7Q96QD5 511 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 IL22Q9GZX6 179 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 OSGEPL1Q9H4B0 414 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 PIH1D1Q9NWS0 290 aaKnown RBP12.83□□□□□ -0.36
CLK3-224ENST00000568605 BFARQ9NZS9 450 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 RIMKLBQ9ULI2 386 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 CLCA2Q9UQC9 943 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 MSRB2Q9Y3D2 182 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 U3KQA8 63 aa12.83□□□□□ -0.36
CLK3-224ENST00000568605 OR5K4A6NMS3 321 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 CCDC188H7C350 402 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 GAPDHSO14556 408 aaPredicted RBP12.82□□□□□ -0.36
CLK3-224ENST00000568605 NUDT21O43809 227 aaKnown RBP12.82□□□□□ -0.36
CLK3-224ENST00000568605 NOBOXO60393 691 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 KCNJ13O60928 360 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 MTX2O75431 263 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 TCEA3O75764 348 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 PNLIPP16233 465 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 ADRA1DP25100 572 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 CLCNKAP51800 687 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 CACNG1Q06432 222 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 SPIDRQ14159 915 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 HLTFQ14527 1009 aaKnown RBP eCLIP12.82□□□□□ -0.36
CLK3-224ENST00000568605 PTPRCAPQ14761 206 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 TRIP13Q15645 432 aaPredicted RBP12.82□□□□□ -0.36
CLK3-224ENST00000568605 ARMC3Q5W041 872 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 AFTPHQ6ULP2 937 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 NRROSQ86YC3 692 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 NXPE1Q8N323 547 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 CCDC74AQ96AQ1 378 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 TTC1Q99614 292 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 CCDC3Q9BQI4 270 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 SYNDIG1Q9H7V2 258 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 VPS37BQ9H9H4 285 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 SMARCAL1Q9NZC9 954 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 KLK13Q9UKR3 277 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 WASF3Q9UPY6 502 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 KCNK6Q9Y257 313 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 PRKAB1Q9Y478 270 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 TCAF1Q9Y4C2 921 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 KCTD3Q9Y597 815 aa12.82□□□□□ -0.36
CLK3-224ENST00000568605 FAM221BA6H8Z2 402 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 MROH6A6NGR9 719 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 RHPN2P1A8MT19 583 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 AGAP14A8MT82 685 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 F8W8V4 182 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 GPR39O43194 453 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 OPA1O60313 960 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 UGT1A9O60656 530 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 MYF5P13349 255 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 F3P13726 295 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 JUPP14923 745 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 ZNF7P17097 686 aaPredicted RBP12.81□□□□□ -0.36
CLK3-224ENST00000568605 UGT1A6P19224 532 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 UGT1A1P22309 533 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 UGT1A4P22310 534 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 UGT1A3P35503 534 aa12.81□□□□□ -0.36
CLK3-224ENST00000568605 UGT1A5P35504 534 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms