RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 LILRA5A6NI73 299 aa16.76■□□□□ 0.27
VPS29-204ENST00000548259 SNX2O60749 519 aa16.76■□□□□ 0.27
VPS29-204ENST00000548259 GNLYP22749 145 aa16.76■□□□□ 0.27
VPS29-204ENST00000548259 GARSP41250 739 aaKnown RBP16.76■□□□□ 0.27
VPS29-204ENST00000548259 TRAF2Q12933 501 aa16.76■□□□□ 0.27
VPS29-204ENST00000548259 MARC1Q5VT66 337 aa16.76■□□□□ 0.27
VPS29-204ENST00000548259 LRRC66Q68CR7 880 aa16.76■□□□□ 0.27
VPS29-204ENST00000548259 TSPAN33Q86UF1 283 aa16.76■□□□□ 0.27
VPS29-204ENST00000548259 TRIM74Q86UV6 250 aa16.76■□□□□ 0.27
VPS29-204ENST00000548259 APLFQ8IW19 511 aaPredicted RBP16.76■□□□□ 0.27
VPS29-204ENST00000548259 RAVER1Q8IY67 606 aaKnown RBP16.76■□□□□ 0.27
VPS29-204ENST00000548259 NEK11Q8NG66 645 aa16.76■□□□□ 0.27
VPS29-204ENST00000548259 KCTD15Q96SI1 283 aaPredicted RBP16.76■□□□□ 0.27
VPS29-204ENST00000548259 AGPAT1Q99943 283 aa16.76■□□□□ 0.27
VPS29-204ENST00000548259 SNRNP25Q9BV90 132 aaKnown RBP16.76■□□□□ 0.27
VPS29-204ENST00000548259 SAMSN1Q9NSI8 373 aaKnown RBP16.76■□□□□ 0.27
VPS29-204ENST00000548259 CPNE7Q9UBL6 633 aa16.76■□□□□ 0.27
VPS29-204ENST00000548259 TBC1D29Q9UFV1 150 aa16.76■□□□□ 0.27
VPS29-204ENST00000548259 PADI1Q9ULC6 663 aa16.76■□□□□ 0.27
VPS29-204ENST00000548259 PPIL1Q9Y3C6 166 aa16.76■□□□□ 0.27
VPS29-204ENST00000548259 OAS3Q9Y6K5 1087 aaKnown RBP16.76■□□□□ 0.27
VPS29-204ENST00000548259 MN1Q10571 1320 aaPredicted RBP16.75■□□□□ 0.27
VPS29-204ENST00000548259 TTC24A2A3L6 582 aaPredicted RBP16.75■□□□□ 0.27
VPS29-204ENST00000548259 H3BRJ5 948 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 CREG1O75629 220 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 NDUFA10O95299 355 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 DDAH2O95865 285 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 SOD1P00441 154 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 F3P13726 295 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 CTPS1P17812 591 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 CA4P22748 312 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 VARSP26640 1264 aaKnown RBP16.75■□□□□ 0.27
VPS29-204ENST00000548259 ARL4AP40617 200 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 MMP13P45452 471 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 PGDP52209 483 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 CDH6P55285 790 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 CA9Q16790 459 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 DPCR1Q3MIW9 517 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 ACAD10Q6JQN1 1059 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 TMCO3Q6UWJ1 677 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 TRIM48Q8IWZ4 208 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 MCOLN2Q8IZK6 566 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 ATPAF2Q8N5M1 289 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 GALNT6Q8NCL4 622 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 FNIP1Q8TF40 1166 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 SCAMP4Q969E2 229 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 COX14Q96I36 57 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 C9orf72Q96LT7 481 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 NSMCE3Q96MG7 304 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 OR6C1Q96RD1 312 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 SIDT1Q9NXL6 827 aaKnown RBP16.75■□□□□ 0.27
VPS29-204ENST00000548259 LNPEPQ9UIQ6 1025 aa16.75■□□□□ 0.27
VPS29-204ENST00000548259 C21orf140B9A014 251 aa16.74■□□□□ 0.27
VPS29-204ENST00000548259 RASSF9O75901 435 aa16.74■□□□□ 0.27
VPS29-204ENST00000548259 KIAA0754O94854 1291 aa16.74■□□□□ 0.27
VPS29-204ENST00000548259 ATP1A3P13637 1013 aa16.74■□□□□ 0.27
VPS29-204ENST00000548259 ACP5P13686 325 aa16.74■□□□□ 0.27
VPS29-204ENST00000548259 AMD1P17707 334 aa16.74■□□□□ 0.27
VPS29-204ENST00000548259 F8A1P23610 371 aa16.74■□□□□ 0.27
VPS29-204ENST00000548259 UQCRFS1P47985 274 aa16.74■□□□□ 0.27
VPS29-204ENST00000548259 HIST2H2BCQ6DN03 193 aa16.74■□□□□ 0.27
VPS29-204ENST00000548259 ANKRD20A12PQ8NF67 263 aa16.74■□□□□ 0.27
VPS29-204ENST00000548259 THAP4Q8WY91 577 aa16.74■□□□□ 0.27
VPS29-204ENST00000548259 RIOK2Q9BVS4 552 aaKnown RBP16.74■□□□□ 0.27
VPS29-204ENST00000548259 SLC29A3Q9BZD2 475 aa16.74■□□□□ 0.27
VPS29-204ENST00000548259 UCK1Q9HA47 277 aa16.74■□□□□ 0.27
VPS29-204ENST00000548259 G3BP2Q9UN86 482 aaKnown RBP16.74■□□□□ 0.27
VPS29-204ENST00000548259 KCNK6Q9Y257 313 aa16.74■□□□□ 0.27
VPS29-204ENST00000548259 PCDHGA6Q9Y5G7 932 aa16.74■□□□□ 0.27
VPS29-204ENST00000548259 K7EM74 188 aa16.73■□□□□ 0.27
VPS29-204ENST00000548259 LRCH4O75427 683 aa16.73■□□□□ 0.27
VPS29-204ENST00000548259 UBXN7O94888 489 aa16.73■□□□□ 0.27
VPS29-204ENST00000548259 EML2O95834 649 aa16.73■□□□□ 0.27
VPS29-204ENST00000548259 SERPINB6P35237 376 aa16.73■□□□□ 0.27
VPS29-204ENST00000548259 KLK7P49862 253 aa16.73■□□□□ 0.27
VPS29-204ENST00000548259 PTSQ03393 145 aa16.73■□□□□ 0.27
VPS29-204ENST00000548259 ITKQ08881 620 aa16.73■□□□□ 0.27
VPS29-204ENST00000548259 PIH1D2Q8WWB5 315 aa16.73■□□□□ 0.27
VPS29-204ENST00000548259 TBC1D10AQ9BXI6 508 aa16.73■□□□□ 0.27
VPS29-204ENST00000548259 CWC15Q9P013 229 aaKnown RBP16.73■□□□□ 0.27
VPS29-204ENST00000548259 PRKAB1Q9Y478 270 aa16.73■□□□□ 0.27
VPS29-204ENST00000548259 ICE1Q9Y2F5 2266 aa16.73■□□□□ 0.27
VPS29-204ENST00000548259 A0A0J9YYE9 177 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 A6NCN8 305 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 DNAJC6O75061 913 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 VIPP01282 170 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 TRBC1P01850 177 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 C9P02748 559 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 ATP1A1P05023 1023 aaKnown RBP16.72■□□□□ 0.27
VPS29-204ENST00000548259 CES1P23141 567 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 MIPP30301 263 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 SEPHS1P49903 392 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 STC1P52823 247 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 MAXP61244 160 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 OGDHQ02218 1023 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 MAMLD1Q13495 774 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 SEMA5AQ13591 1074 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 DNASE1L3Q13609 305 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 DPYSQ14117 519 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms