RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 PRDX6P30041 224 aa10.42□□□□□ -0.74
LIG1-220ENST00000601091 GDI2P50395 445 aaKnown RBP10.42□□□□□ -0.74
LIG1-220ENST00000601091 SNX17Q15036 470 aa10.42□□□□□ -0.74
LIG1-220ENST00000601091 RBBP7Q16576 425 aa10.42□□□□□ -0.74
LIG1-220ENST00000601091 AASDHQ4L235 1098 aaPredicted RBP10.42□□□□□ -0.74
LIG1-220ENST00000601091 RAB6CQ53S08 254 aa10.42□□□□□ -0.74
LIG1-220ENST00000601091 CCDC28AQ8IWP9 274 aa10.42□□□□□ -0.74
LIG1-220ENST00000601091 PIK3C3Q8NEB9 887 aa10.42□□□□□ -0.74
LIG1-220ENST00000601091 OR6C4Q8NGE1 309 aa10.42□□□□□ -0.74
LIG1-220ENST00000601091 ASZ1Q8WWH4 475 aa10.42□□□□□ -0.74
LIG1-220ENST00000601091 SMG7Q92540 1137 aaKnown RBP10.42□□□□□ -0.74
LIG1-220ENST00000601091 AGAP2Q99490 1192 aa10.42□□□□□ -0.74
LIG1-220ENST00000601091 RAB6CQ9H0N0 254 aa10.42□□□□□ -0.74
LIG1-220ENST00000601091 EBF3Q9H4W6 596 aa10.42□□□□□ -0.74
LIG1-220ENST00000601091 PPM1HQ9ULR3 514 aa10.42□□□□□ -0.74
LIG1-220ENST00000601091 VPS4AQ9UN37 437 aa10.42□□□□□ -0.74
LIG1-220ENST00000601091 IPPQ9Y573 584 aa10.42□□□□□ -0.74
LIG1-220ENST00000601091 TCRBV5S1A1TA0A578 114 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 FGF10O15520 208 aaPredicted RBP10.41□□□□□ -0.74
LIG1-220ENST00000601091 KCNH1O95259 989 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 POMCP01189 267 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 HPGDP15428 266 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 PSMA4P25789 261 aaKnown RBP10.41□□□□□ -0.74
LIG1-220ENST00000601091 CRYBB1P53674 252 aaPredicted RBP10.41□□□□□ -0.74
LIG1-220ENST00000601091 SEC13P55735 322 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 NME5P56597 212 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 RELQ04864 619 aaPredicted RBP10.41□□□□□ -0.74
LIG1-220ENST00000601091 SQLEQ14534 574 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 GRM3Q14832 879 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 ACAP2Q15057 778 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 SAMD4BQ5PRF9 694 aaKnown RBP10.41□□□□□ -0.74
LIG1-220ENST00000601091 FOXB2Q5VYV0 432 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 MFSD14CQ5VZR4 134 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 KIAA1841Q6NSI8 718 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 PKN3Q6P5Z2 889 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 TTC33Q6PID6 262 aaPredicted RBP10.41□□□□□ -0.74
LIG1-220ENST00000601091 DLK2Q6UY11 383 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 USP43Q70EL4 1123 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 MIB1Q86YT6 1006 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 OSBPL2Q9H1P3 480 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 TBC1D23Q9NUY8 699 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 PKD2L2Q9NZM6 624 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 SMIM31A0A1B0GVY4 71 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 SLC12A8A0AV02 714 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 GLP2RO95838 553 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 RETP07949 1114 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 DLG2Q15700 870 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 ZNF425Q6IV72 752 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 EFL1Q7Z2Z2 1120 aaKnown RBP10.41□□□□□ -0.74
LIG1-220ENST00000601091 TFAP2DQ7Z6R9 452 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 REM2Q8IYK8 340 aaPredicted RBP10.41□□□□□ -0.74
LIG1-220ENST00000601091 DSELQ8IZU8 1212 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 SPATA6LQ8N4H0 392 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 FNDC8Q8TC99 324 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 PANX3Q96QZ0 392 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 TLE6Q9H808 572 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 SIAEQ9HAT2 523 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 ABCC13Q9NSE7 274 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 CYB5R1Q9UHQ9 305 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 AP3M1Q9Y2T2 418 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 AP4S1Q9Y587 144 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 OR6C65A6NJZ3 312 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 SOAT2O75908 522 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 IL1BP01584 269 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 THPOP40225 353 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 RPL5P46777 297 aaKnown RBP10.41□□□□□ -0.74
LIG1-220ENST00000601091 PSME3P61289 254 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 SGCAQ16586 387 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 WSCD2Q2TBF2 565 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 C10orf120Q5SQS8 335 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 PRAMEF19Q5SWL8 479 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 HMBOX1Q6NT76 420 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 DCLRE1AQ6PJP8 1040 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 CYP2R1Q6VVX0 501 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 B3GNT6Q6ZMB0 384 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 ZNF852Q6ZMS4 543 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 CYS1Q717R9 158 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 SATL1Q86VE3 508 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 DHFR2Q86XF0 187 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 CYGBQ8WWM9 190 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 TIFAQ96CG3 184 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 RTP4Q96DX8 246 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 TMEM79Q9BSE2 394 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 RHOBTB2Q9BYZ6 727 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 CLEC4AQ9UMR7 237 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 DMTF1Q9Y222 760 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 CAPN8A6NHC0 703 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 CACNB4O00305 520 aaPredicted RBP10.41□□□□□ -0.74
LIG1-220ENST00000601091 NR5A2O00482 541 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 GREM1O60565 184 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 OLFM2O95897 454 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 EIF2S1P05198 315 aaKnown RBP10.41□□□□□ -0.74
LIG1-220ENST00000601091 POLR2CP19387 275 aaPredicted RBP10.41□□□□□ -0.74
LIG1-220ENST00000601091 SERPINH1P50454 418 aaKnown RBP10.41□□□□□ -0.74
LIG1-220ENST00000601091 IL1RL1Q01638 556 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 MAPKAPK3Q16644 382 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 LIN52Q52LA3 116 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 SPOUT1Q5T280 376 aaKnown RBP10.41□□□□□ -0.74
LIG1-220ENST00000601091 SYPL2Q5VXT5 272 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 MBLAC2Q68D91 279 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms