RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 ZKSCAN8Q15776 578 aaPredicted RBP18.52■□□□□ 0.56
CLN3-206ENST00000360019 CHRNA6Q15825 494 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 FAM46CQ5VWP2 391 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 LIPIQ6XZB0 460 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 SNX20Q7Z614 316 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 CEP97Q8IW35 865 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 ATXN2LQ8WWM7 1075 aaKnown RBP18.52■□□□□ 0.56
CLN3-206ENST00000360019 PLEKHG4BQ96PX9 1271 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 CAPS2Q9BXY5 557 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 HDAC8Q9BY41 377 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 ASB8Q9H765 288 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 CD248Q9HCU0 757 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 INTS9Q9NV88 658 aaKnown RBP18.52■□□□□ 0.56
CLN3-206ENST00000360019 NKIRAS1Q9NYS0 192 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 PKD2L2Q9NZM6 624 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 SLC17A7Q9P2U7 560 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 CD84Q9UIB8 345 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 MID1O15344 667 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 PHGDHO43175 533 aaKnown RBP18.51■□□□□ 0.55
CLN3-206ENST00000360019 C2P06681 752 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 HOXB2P14652 356 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 GM2AP17900 193 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 UGT1A6P19224 532 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 COL9A1P20849 921 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 UGT1A1P22309 533 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 UGT1A4P22310 534 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 UGT1A3P35503 534 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 UGT1A5P35504 534 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 POLD2P49005 469 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 TTPAP49638 278 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 PTPN5P54829 565 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 TAS2R39P59534 338 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 MRPS21P82921 87 aaKnown RBP18.51■□□□□ 0.55
CLN3-206ENST00000360019 CNTN1Q12860 1018 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 ZNF460Q14592 562 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 PIP5KL1Q5T9C9 394 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 HECTD2Q5U5R9 776 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 SDE2Q6IQ49 451 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 Q6ZVL8 140 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 TAS2R42Q7RTR8 314 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 AADATQ8N5Z0 425 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 OR2T3Q8NH03 318 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 MAFAQ8NHW3 353 aaPredicted RBP18.51■□□□□ 0.55
CLN3-206ENST00000360019 OLFM1Q99784 485 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 MKRN2Q9H000 416 aaKnown RBP18.51■□□□□ 0.55
CLN3-206ENST00000360019 VPS11Q9H270 941 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 A0A096LPK6 155 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 TRBV5-4A0A0C4DH59 114 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 OR1I1O60431 355 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 NDUFS3O75489 264 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 ZWINTO95229 277 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 ELFN1P0C7U0 828 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 ITGALP20701 1170 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 CRHR1P34998 444 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 ETV3P41162 512 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 RAB10P61026 200 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 POU4F1Q01851 419 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 ZP2Q05996 745 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 ELP6Q0PNE2 266 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 STARD3Q14849 445 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 AARS2Q5JTZ9 985 aaKnown RBP18.51■□□□□ 0.55
CLN3-206ENST00000360019 TRMT11Q7Z4G4 463 aaKnown RBP18.51■□□□□ 0.55
CLN3-206ENST00000360019 ADHFE1Q8IWW8 467 aa18.51■□□□□ 0.55
CLN3-206ENST00000360019 WRAP53Q9BUR4 548 aaKnown RBP18.51■□□□□ 0.55
CLN3-206ENST00000360019 UBA6A0AVT1 1052 aaPredicted RBP18.5■□□□□ 0.55
CLN3-206ENST00000360019 AGAP14A8MT82 685 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 TM9SF1O15321 606 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 RNASEH1O60930 286 aaKnown RBP18.5■□□□□ 0.55
CLN3-206ENST00000360019 ASMTLO95671 621 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 MPOP05164 745 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 SLC35E2BP0CK96 405 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 STMN1P16949 149 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 CCT5P48643 541 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 LIG3P49916 1009 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 SUOXP51687 545 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 CDKN2DP55273 166 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 RPS14P62263 151 aaKnown RBP18.5■□□□□ 0.55
CLN3-206ENST00000360019 IRF9Q00978 393 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 MLF2Q15773 248 aaPredicted RBP18.5■□□□□ 0.55
CLN3-206ENST00000360019 DBN1Q16643 649 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 RNF187Q5TA31 235 aaPredicted RBP18.5■□□□□ 0.55
CLN3-206ENST00000360019 ZDHHC20Q5W0Z9 365 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 RAPH1Q70E73 1250 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 TECPR1Q7Z6L1 1165 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 SERPINA9Q86WD7 417 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 SPNS2Q8IVW8 549 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 RPLP0P6Q8NHW5 317 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 ZNF398Q8TD17 642 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 SCAMP4Q969E2 229 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 CCDC97Q96F63 343 aaPredicted RBP18.5■□□□□ 0.55
CLN3-206ENST00000360019 SERGEFQ9UGK8 458 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 GRID1Q9ULK0 1009 aa18.5■□□□□ 0.55
CLN3-206ENST00000360019 CORO1CQ9ULV4 474 aaPredicted RBP18.5■□□□□ 0.55
CLN3-206ENST00000360019 H0Y858 1186 aa18.49■□□□□ 0.55
CLN3-206ENST00000360019 SHOX2O60902 331 aaPredicted RBP18.49■□□□□ 0.55
CLN3-206ENST00000360019 ADH1BP00325 375 aa18.49■□□□□ 0.55
CLN3-206ENST00000360019 ETV4P43268 484 aa18.49■□□□□ 0.55
CLN3-206ENST00000360019 DCDC1P59894 354 aa18.49■□□□□ 0.55
CLN3-206ENST00000360019 TIAL1Q01085 375 aaKnown RBP eCLIP18.49■□□□□ 0.55
CLN3-206ENST00000360019 FBXO43Q4G163 708 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms