RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 SNX20Q7Z614 316 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 TMEM151AQ8N4L1 468 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 HEXDCQ8WVB3 486 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 MRPL57Q9BQC6 102 aaKnown RBP18.07■□□□□ 0.48
VIM-201ENST00000224237 TRIM55Q9BYV6 548 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 MRPL46Q9H2W6 279 aaKnown RBP18.07■□□□□ 0.48
VIM-201ENST00000224237 MTG2Q9H4K7 406 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 FAM96AQ9H5X1 160 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 IGSF5Q9NSI5 407 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 GTSE1Q9NYZ3 720 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 CPSF2Q9P2I0 782 aaKnown RBP18.07■□□□□ 0.48
VIM-201ENST00000224237 XPR1Q9UBH6 696 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 COMMD10Q9Y6G5 202 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 MUC22E2RYF6 1773 aaPredicted RBP18.06■□□□□ 0.48
VIM-201ENST00000224237 GLYATL1P3A0A0U1RQE8 302 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.06■□□□□ 0.48
VIM-201ENST00000224237 H2AFYO75367 372 aaKnown RBP18.06■□□□□ 0.48
VIM-201ENST00000224237 CCDC166P0CW27 439 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 BPIP17213 487 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 ITGALP20701 1170 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 IGFBP4P22692 258 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 FMO4P31512 558 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 GJA4P35212 333 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 PTGER3P43115 390 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 ZYG11AQ6WRX3 759 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 TAS2R42Q7RTR8 314 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 PIM3Q86V86 326 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 PHTF2Q8N3S3 785 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 ZNF366Q8N895 744 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 ZNF398Q8TD17 642 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 HCAR2Q8TDS4 363 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 FAM161BQ96MY7 647 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 TTC1Q99614 292 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 NPHS2Q9NP85 383 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 TAS2R13Q9NYV9 303 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 PRUNE2Q8WUY3 3088 aa18.06■□□□□ 0.48
VIM-201ENST00000224237 A8MX80 341 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 GAPDHSO14556 408 aaPredicted RBP18.05■□□□□ 0.48
VIM-201ENST00000224237 CTSLP07711 333 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 CYP2A6P11509 494 aaPredicted RBP18.05■□□□□ 0.48
VIM-201ENST00000224237 LHCGRP22888 699 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 PRKAA2P54646 552 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 OVGP1Q12889 678 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 PDAP1Q13442 181 aaKnown RBP18.05■□□□□ 0.48
VIM-201ENST00000224237 NFATC2Q13469 925 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 ITGA9Q13797 1035 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 PREPLQ4J6C6 727 aaPredicted RBP18.05■□□□□ 0.48
VIM-201ENST00000224237 FNDC3BQ53EP0 1204 aaKnown RBP18.05■□□□□ 0.48
VIM-201ENST00000224237 ZDHHC20Q5W0Z9 365 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 CES4AQ5XG92 561 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 CRLF3Q8IUI8 442 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 SPATA6LQ8N4H0 392 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 UCMAQ8WVF2 138 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 MSLNLQ96KJ4 702 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 ASB8Q9H765 288 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 IL26Q9NPH9 171 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 OXSMQ9NWU1 459 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 DKK3Q9UBP4 350 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 B4GALT6Q9UBX8 382 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 TARM1B6A8C7 271 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 TRIM13O60858 407 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 ECI2O75521 394 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 RHOBTB1O94844 696 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 KIAA0754O94854 1291 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 SBK3P0C264 359 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 CHRM1P11229 460 aaPredicted RBP18.05■□□□□ 0.48
VIM-201ENST00000224237 PKMP14618 531 aaKnown RBP18.05■□□□□ 0.48
VIM-201ENST00000224237 ZNF37AP17032 561 aaPredicted RBP18.05■□□□□ 0.48
VIM-201ENST00000224237 ZNF30P17039 623 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 CD9P21926 228 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 OPRD1P41143 372 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 TIAL1Q01085 375 aaKnown RBP eCLIP18.05■□□□□ 0.48
VIM-201ENST00000224237 ARHGEF7Q14155 803 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 ACAP2Q15057 778 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 HNRNPA1L2Q32P51 320 aaKnown RBP18.05■□□□□ 0.48
VIM-201ENST00000224237 ZNF805Q5CZA5 627 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 ANKRD49Q8WVL7 239 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 C10orf82Q8WW14 230 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 PBXIP1Q96AQ6 731 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 THOC1Q96FV9 657 aaKnown RBP18.05■□□□□ 0.48
VIM-201ENST00000224237 BIRC8Q96P09 236 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 USH1CQ9Y6N9 552 aa18.05■□□□□ 0.48
VIM-201ENST00000224237 EDDM13A0A1B0GTR0 161 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 TBC1D3BA6NDS4 549 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 ANTXRLA6NF34 631 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 UPK3BL1B0FP48 263 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 UPK3BL2E5RIL1 263 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 GPR39O43194 453 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 ESR1P03372 595 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 PYGLP06737 847 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 RBP1P09455 135 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 GDI1P31150 447 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 SLC1A6P48664 564 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 PTSQ03393 145 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 LRIT3Q3SXY7 679 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 GPR33Q49SQ1 333 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 TECRLQ5HYJ1 363 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 LYPLAL1Q5VWZ2 237 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 LIPMQ5VYY2 423 aa18.04■□□□□ 0.48
VIM-201ENST00000224237 TMEM207Q6UWW9 146 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms