RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 SCOCQ9UIL1 159 aa4.62□□□□□ -1.67
SF3B1-202ENST00000409915 AGAP1Q9UPQ3 857 aa4.62□□□□□ -1.67
SF3B1-202ENST00000409915 DERAQ9Y315 318 aa4.62□□□□□ -1.67
SF3B1-202ENST00000409915 TIMM22Q9Y584 194 aa4.62□□□□□ -1.67
SF3B1-202ENST00000409915 LYVE1Q9Y5Y7 322 aa4.62□□□□□ -1.67
SF3B1-202ENST00000409915 CDY1Q9Y6F8 540 aa4.62□□□□□ -1.67
SF3B1-202ENST00000409915 AP1M2Q9Y6Q5 423 aa4.62□□□□□ -1.67
SF3B1-202ENST00000409915 TSC2P49815 1807 aa4.62□□□□□ -1.67
SF3B1-202ENST00000409915 PLXNA3P51805 1871 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 DPPA5A6NC42 116 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 A8MV72 311 aaPredicted RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 FAM171A2A8MVW0 826 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 PIRO00625 290 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 NDUFAB1O14561 156 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 KIAA0391O15091 583 aaKnown RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 TBC1D4O60343 1298 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 RFPL2O75678 378 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 SNX4O95219 450 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 METTL18O95568 372 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 FAM107AO95990 144 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 GLUD1P00367 558 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 TNNC2P02585 160 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 CELA3BP08861 270 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 TMIGD3P0DMS9 266 aaPredicted RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 CYP2A6P11509 494 aaPredicted RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 ODC1P11926 461 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 S100A1P23297 94 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 TBXAS1P24557 533 aaPredicted RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 ACAT1P24752 427 aaKnown RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 CCNE1P24864 410 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 OR1D2P34982 312 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 PSMC2P35998 433 aaKnown RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 PGM1P36871 562 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 PSMB10P40306 273 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 RAP1GAPP47736 663 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 GCLMP48507 274 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 TAF6P49848 677 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 CLCN4P51793 760 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 ARFIP2P53365 341 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 PMS2P54278 862 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 BCAT1P54687 386 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 MLLT6P55198 1093 aaPredicted RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 SESN2P58004 480 aaPredicted RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 YBEYP58557 167 aaPredicted RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 LILRA4P59901 499 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 MYL6P60660 151 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 TUBA1BP68363 451 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 TUBA4AP68366 448 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 PDE1BQ01064 536 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 PPP3CAQ08209 521 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 MGAT2Q10469 447 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 ELAVL2Q12926 359 aaKnown RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 MYO1EQ12965 1108 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 SLC13A2Q13183 592 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 DCTN2Q13561 401 aaKnown RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 LAPTM5Q13571 262 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 KCNC3Q14003 757 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 OASLQ15646 514 aaKnown RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 DPCR1Q3MIW9 517 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 ANKRD20A8PQ5CZ79 823 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 TCP11X2Q5H9J9 407 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 DCAF17Q5H9S7 520 aaPredicted RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 C1orf220Q5T0J3 134 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 PRAMEF9Q5VWM5 478 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 NAA35Q5VZE5 725 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 ALS2CLQ60I27 953 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 WSCD1Q658N2 575 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 ANKRD40Q6AI12 368 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 OR52E8Q6IFG1 317 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 TTI2Q6NXR4 508 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 ANKRD54Q6NXT1 300 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 SYCE2Q6PIF2 218 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 CYP20A1Q6UW02 462 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 TMC5Q6UXY8 1006 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 SCARA5Q6ZMJ2 495 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 KDM7AQ6ZMT4 941 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 TUBA1AQ71U36 451 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 TRAPPC11Q7Z392 1133 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 USP37Q86T82 979 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 ZNF554Q86TJ5 538 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 WDR49Q8IV35 697 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 KIAA2013Q8IYS2 634 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 KIRREL3Q8IZU9 778 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 NLGN4XQ8N0W4 816 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 CSGALNACT2Q8N6G5 542 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 TTC9BQ8N6N2 239 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 C10orf53Q8N6V4 93 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 ZBTB44Q8NCP5 570 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 OR10T2Q8NGX3 314 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 GABPB2Q8TAK5 448 aaPredicted RBP4.61□□□□□ -1.67
SF3B1-202ENST00000409915 METTL6Q8TCB7 284 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 CPT1CQ8TCG5 803 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 ACMSDQ8TDX5 336 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 SLC22A17Q8WUG5 538 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 NELFBQ8WX92 580 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 C3orf49Q96BT1 292 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 STAMBPL1Q96FJ0 436 aa4.61□□□□□ -1.67
SF3B1-202ENST00000409915 ANKRD36BP1Q96IX9 119 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms