RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 TSPAN18Q96SJ8 248 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 MAF1Q9H063 256 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 TRIM39Q9HCM9 518 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 TRMT13Q9NUP7 481 aaKnown RBP19.28■□□□□ 0.68
USP48-201ENST00000308271 FZD10Q9ULW2 581 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 MAPRE3Q9UPY8 281 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 GSTK1Q9Y2Q3 226 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 FFAR3O14843 346 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 GPR42O15529 346 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 FADS2O95864 444 aaKnown RBP19.28■□□□□ 0.68
USP48-201ENST00000308271 ABCB1P08183 1280 aaPredicted RBP19.28■□□□□ 0.68
USP48-201ENST00000308271 TSPAN19P0C672 248 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 C1orf220Q5T0J3 134 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 ANKRD23Q86SG2 305 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 FAM35AQ86V20 835 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 ARL15Q9NXU5 204 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 PCDHB5Q9Y5E4 795 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 MYH7P12883 1935 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 LRIG2O94898 1065 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 STAU1O95793 577 aaKnown RBP19.27■□□□□ 0.68
USP48-201ENST00000308271 GSTM1P09488 218 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 CYP4B1P13584 511 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 SEPHS1P49903 392 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 ENTPD1P49961 510 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 RNF19BQ6ZMZ0 732 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 ERMP1Q7Z2K6 904 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 DENND6AQ8IWF6 608 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 ZNF420Q8TAQ5 688 aaPredicted RBP19.27■□□□□ 0.68
USP48-201ENST00000308271 ITCHQ96J02 903 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 CAMKK2Q96RR4 588 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 CLN6Q9NWW5 311 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.27■□□□□ 0.68
USP48-201ENST00000308271 ZNF221Q9UK13 617 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 PSME2Q9UL46 239 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 UBXN8O00124 270 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 RPLP2P05387 115 aaKnown RBP19.27■□□□□ 0.68
USP48-201ENST00000308271 CDH5P33151 784 aaPredicted RBP19.27■□□□□ 0.68
USP48-201ENST00000308271 C11orf74Q86VG3 221 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 FCRL2Q96LA5 508 aaPredicted RBP19.27■□□□□ 0.68
USP48-201ENST00000308271 FIZ1Q96SL8 496 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 RPRD1BQ9NQG5 326 aaKnown RBP19.27■□□□□ 0.68
USP48-201ENST00000308271 MOSPD1Q9UJG1 213 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 ABT1Q9ULW3 272 aaKnown RBP19.27■□□□□ 0.68
USP48-201ENST00000308271 POLR3HQ9Y535 204 aaPredicted RBP19.27■□□□□ 0.68
USP48-201ENST00000308271 ZNF541Q9H0D2 1346 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 ELOVL7A1L3X0 281 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 CXCL11O14625 94 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 FTH1P02794 183 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 CYP2B6P20813 491 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 ALDH6A1Q02252 535 aaKnown RBP19.27■□□□□ 0.68
USP48-201ENST00000308271 CLCQ05315 142 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 SIM2Q14190 667 aaPredicted RBP19.27■□□□□ 0.68
USP48-201ENST00000308271 CRY1Q16526 586 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 FAM91A1Q658Y4 838 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 CAND1Q86VP6 1230 aaKnown RBP19.27■□□□□ 0.68
USP48-201ENST00000308271 CDK5RAP1Q96SZ6 601 aaKnown RBP19.27■□□□□ 0.68
USP48-201ENST00000308271 NENFQ9UMX5 172 aa19.27■□□□□ 0.68
USP48-201ENST00000308271 C9JVG2 144 aa19.27■□□□□ 0.67
USP48-201ENST00000308271 YWHAQP27348 245 aa19.27■□□□□ 0.67
USP48-201ENST00000308271 TPTEP56180 551 aa19.27■□□□□ 0.67
USP48-201ENST00000308271 QPRTQ15274 297 aa19.27■□□□□ 0.67
USP48-201ENST00000308271 HERPUD2Q9BSE4 406 aa19.27■□□□□ 0.67
USP48-201ENST00000308271 RNF181Q9P0P0 153 aa19.27■□□□□ 0.67
USP48-201ENST00000308271 ZDHHC2Q9UIJ5 367 aa19.27■□□□□ 0.67
USP48-201ENST00000308271 ERGIC3Q9Y282 383 aa19.27■□□□□ 0.67
USP48-201ENST00000308271 TIMM22Q9Y584 194 aa19.27■□□□□ 0.67
USP48-201ENST00000308271 CCL15-CCL14A0A0B4J2E2 113 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 ALDH1A1P00352 501 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 ZNF460Q14592 562 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 CCL15Q16663 113 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 MYLK3Q32MK0 819 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 FGD3Q5JSP0 725 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 OGFRL1Q5TC84 451 aaPredicted RBP19.26■□□□□ 0.67
USP48-201ENST00000308271 TLK2Q86UE8 772 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 LGI2Q8N0V4 545 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 GAD1Q99259 594 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 MIEF1Q9NQG6 463 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 SH3BP1Q9Y3L3 701 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 PIPSLA2A3N6 862 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 LOC110117498-PIK3R3F6TDL0 507 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 PDLIM1O00151 329 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 PIP5K1BO14986 540 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 SCELO95171 688 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 TOP3BO95985 862 aaKnown RBP19.26■□□□□ 0.67
USP48-201ENST00000308271 DNAJB1P25685 340 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 DGKZQ13574 1117 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 KIAA0930Q6ICG6 404 aaPredicted RBP19.26■□□□□ 0.67
USP48-201ENST00000308271 NEK10Q6ZWH5 1172 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 SERHL2Q9H4I8 314 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 SERHLQ9NQF3 203 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 DYRK1BQ9Y463 629 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 RAP2AP10114 183 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 NCK1P16333 377 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 GPC1P35052 558 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 HPCAL1P37235 193 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 ZFP69Q49AA0 526 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 PLEKHG4Q58EX7 1191 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 RBM48Q5RL73 367 aaKnown RBP19.26■□□□□ 0.67
USP48-201ENST00000308271 SPATA22Q8NHS9 363 aa19.26■□□□□ 0.67
USP48-201ENST00000308271 LINGO1Q96FE5 620 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms