RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 MFAP3LO75121 409 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 TRBC1P01850 177 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 CEACAM5P06731 702 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 PDHA1P08559 390 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 CDK3Q00526 305 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 EIF3IQ13347 325 aaKnown RBP19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 MESDQ14696 234 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 C3orf38Q5JPI3 329 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 LRRC38Q5VT99 294 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 KCTD16Q68DU8 428 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 RAET1GQ6H3X3 334 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 ZNF765Q7L2R6 523 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 CNGA4Q8IV77 575 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 CCDC13Q8IYE1 715 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 NRSN1Q8IZ57 195 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 PELI3Q8N2H9 469 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 ARL14Q8N4G2 192 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 CCNYQ8ND76 341 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 GPBAR1Q8TDU6 330 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 CCDC97Q96F63 343 aaPredicted RBP19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 LIN37Q96GY3 246 aaPredicted RBP19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 GFM1Q96RP9 751 aaKnown RBP19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 LGMNQ99538 433 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 GSDMCQ9BYG8 508 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 FRMD8Q9BZ67 464 aaPredicted RBP19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 DPH1Q9BZG8 443 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 STRADBQ9C0K7 418 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 DPEP2Q9H4A9 486 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 PRORYQ9H606 182 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 NHEJ1Q9H9Q4 299 aaPredicted RBP19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 ASCL3Q9NQ33 180 aa19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 CCDC187A0A096LP49 1063 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 ZW10O43264 779 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 NUDT21O43809 227 aaKnown RBP19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 ZFXP17010 805 aaPredicted RBP19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 CTPS1P17812 591 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 SLC1A1P43005 524 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 GPR1P46091 355 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 UCNP55089 124 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 GBE1Q04446 702 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 CCDC173Q0VFZ6 552 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 ILF3Q12906 894 aaKnown RBP eCLIP19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 TCEA2Q15560 299 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 C14orf28Q4W4Y0 310 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 CERCAMQ5T4B2 595 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 BROXQ5VW32 411 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 LRRC66Q68CR7 880 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 ADAMTSL4Q6UY14 1074 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 NYAP1Q6ZVC0 841 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 TSPAN33Q86UF1 283 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 CPNE8Q86YQ8 564 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 SPACA3Q8IXA5 215 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 ARRDC2Q8TBH0 407 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 RAPGEF5Q92565 580 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 TMEM74Q96NL1 305 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 LYSMD1Q96S90 227 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 CHP1Q99653 195 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 TDRD1Q9BXT4 1180 aaKnown RBP19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 MAK16Q9BXY0 300 aaKnown RBP19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 LRRN3Q9H3W5 708 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 CARS2Q9HA77 564 aaKnown RBP19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 DTLQ9NZJ0 730 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 SLC17A4Q9Y2C5 497 aa19.03■□□□□ 0.64
CCDC28A-203ENST00000617445 BPTFQ12830 3046 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 LRRD1A4D1F6 860 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 CAPN8A6NHC0 703 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 NOBOXO60393 691 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 RPLP0P05388 317 aaKnown RBP19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 IVLP07476 585 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 CCL7P80098 99 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 DSC2Q02487 901 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 PTSQ03393 145 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 TLE3Q04726 772 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 SLC10A2Q12908 348 aaPredicted RBP19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 HLTFQ14527 1009 aaKnown RBP eCLIP19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 TCEAL1Q15170 157 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 SOWAHCQ53LP3 525 aaPredicted RBP19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 CCNJLQ8IV13 435 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 AP2M1Q96CW1 435 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 SCARF2Q96GP6 870 aaPredicted RBP19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 UBL7Q96S82 380 aaPredicted RBP19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 BRD8Q9H0E9 1235 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 SYNDIG1Q9H7V2 258 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 PCDH9Q9HC56 1237 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 RABGEF1Q9UJ41 708 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 CHKBQ9Y259 395 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 TTLL3Q9Y4R7 772 aa19.02■□□□□ 0.64
CCDC28A-203ENST00000617445 GOLGA6CA6NDK9 693 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 GOLGA6BA6NDN3 693 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 D6RAR5 112 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 MAP3K6O95382 1288 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 PRLP01236 227 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 HLA-DQB2P05538 268 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 GOLGA6DP0CG33 693 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 CCKBRP32239 447 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 STC1P52823 247 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 PDX1P52945 283 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 IFI35P80217 286 aaPredicted RBP19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 PPIDQ08752 370 aaKnown RBP19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms