RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ARHGEF17Q96PE2 2063 aaPredicted RBP7.48□□□□□ -1.21
NUP54-215ENST00000514313 LOC100509620A0A075B734 347 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 LNP1A1A4G5 178 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 KRTAP9-7A8MTY7 169 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 ATG13O75143 517 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 GPC4O75487 556 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 DAB1O75553 588 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 MYBL1P10243 752 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 CERS1P27544 350 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 INPP5JQ15735 1006 aaPredicted RBP7.48□□□□□ -1.21
NUP54-215ENST00000514313 IL27RAQ6UWB1 636 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 DEF8Q6ZN54 512 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 EGLN2Q96KS0 407 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 ADPGKQ9BRR6 497 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 QTRT1Q9BXR0 403 aaKnown RBP7.48□□□□□ -1.21
NUP54-215ENST00000514313 EDEM3Q9BZQ6 932 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 PIGMQ9H3S5 423 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 HINT3Q9NQE9 182 aaKnown RBP7.48□□□□□ -1.21
NUP54-215ENST00000514313 ADARB2Q9NS39 739 aaKnown RBP7.48□□□□□ -1.21
NUP54-215ENST00000514313 MTMR10Q9NXD2 777 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 ZNF112Q9UJU3 913 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 FBXW11Q9UKB1 542 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 CCL27Q9Y4X3 112 aa7.48□□□□□ -1.21
NUP54-215ENST00000514313 ZNF644Q9H582 1327 aaPredicted RBP7.48□□□□□ -1.21
NUP54-215ENST00000514313 A0A1B0GVM2 712 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 URADA6NGE7 173 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 A6NL46 340 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 ZNF814B7Z6K7 855 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 MDM4O15151 490 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 PLRG1O43660 514 aaKnown RBP7.47□□□□□ -1.21
NUP54-215ENST00000514313 TLR2O60603 784 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 CNOT3O75175 753 aaKnown RBP7.47□□□□□ -1.21
NUP54-215ENST00000514313 NDUFB4O95168 129 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 CYP19A1P11511 503 aaPredicted RBP7.47□□□□□ -1.21
NUP54-215ENST00000514313 MYF6P23409 242 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 PRCPP42785 496 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 GPR143P51810 404 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 CXCL9Q07325 125 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 SNTB1Q13884 538 aaKnown RBP7.47□□□□□ -1.21
NUP54-215ENST00000514313 IL11RAQ14626 422 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 DAZAP2Q15038 168 aaPredicted RBP7.47□□□□□ -1.21
NUP54-215ENST00000514313 DLG2Q15700 870 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 ZNF628Q5EBL2 1059 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 LCE4AQ5TA78 99 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 ENGASEQ8NFI3 743 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 TRPC4APQ8TEL6 797 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 SLC35F5Q8WV83 523 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 ZNF653Q96CK0 615 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 RMDN1Q96DB5 314 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 CCDC106Q9BWC9 280 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 COG5Q9UP83 839 aa7.47□□□□□ -1.21
NUP54-215ENST00000514313 HIST1H2ABP04908 130 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 HIST1H2ADP20671 130 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 ACVRL1P37023 503 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 PIGAP37287 484 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 THPOP40225 353 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 COMPP49747 757 aaPredicted RBP7.46□□□□□ -1.22
NUP54-215ENST00000514313 ZNF41P51814 821 aaPredicted RBP7.46□□□□□ -1.22
NUP54-215ENST00000514313 DUSP6Q16828 381 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 SUPT20HL1Q3ZLR7 823 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 KRBOX4Q5JUW0 171 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 STRIP1Q5VSL9 837 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 HIST3H2AQ7L7L0 130 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 ANKRD13BQ86YJ7 626 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 ARID3BQ8IVW6 561 aaPredicted RBP7.46□□□□□ -1.22
NUP54-215ENST00000514313 AGBL3Q8NEM8 1001 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 PTPMT1Q8WUK0 201 aaPredicted RBP7.46□□□□□ -1.22
NUP54-215ENST00000514313 TMEM174Q8WUU8 243 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 MOAP1Q96BY2 351 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 SPATA17Q96L03 361 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 COPG2Q9UBF2 871 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 RAI2Q9Y5P3 530 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 ARHGEF40Q8TER5 1519 aa7.46□□□□□ -1.22
NUP54-215ENST00000514313 TRBC2A0A5B9 178 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 E5RJQ4 531 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 C22orf31O95567 290 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 QDPRP09417 244 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 TMF1P82094 1093 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 NHLH1Q02575 133 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 MTX1Q13505 466 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 SCARB2Q14108 478 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 PNLIPRP3Q17RR3 467 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 KRT80Q6KB66 452 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 DNAJB7Q7Z6W7 309 aaPredicted RBP7.45□□□□□ -1.22
NUP54-215ENST00000514313 SDCCAG8Q86SQ7 713 aaPredicted RBP7.45□□□□□ -1.22
NUP54-215ENST00000514313 PATL1Q86TB9 770 aaKnown RBP7.45□□□□□ -1.22
NUP54-215ENST00000514313 CEP97Q8IW35 865 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 MCUQ8NE86 351 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 PTERQ96BW5 349 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 TASP1Q9H6P5 420 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 PPP1R3EQ9H7J1 279 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 PCDHA12Q9UN75 941 aa7.45□□□□□ -1.22
NUP54-215ENST00000514313 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.45□□□□□ -1.22
NUP54-215ENST00000514313 GPR75-ASB3A0A0A6YYF3 556 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 FAM170AA1A519 330 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 LDB2O43679 373 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 TBCAO75347 108 aaKnown RBP7.44□□□□□ -1.22
NUP54-215ENST00000514313 IFNA2P01563 188 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 ICAM1P05362 532 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 TPOP07202 933 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms