RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 ZFXP17010 805 aaPredicted RBP19.36■□□□□ 0.69
USP40-207ENST00000450940 CA4P22748 312 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 LSSP48449 732 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 CDK3Q00526 305 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 LRRC66Q68CR7 880 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 DENND2CQ68D51 928 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 C19orf48Q6RUI8 117 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 RBM44Q6ZP01 1051 aaKnown RBP19.36■□□□□ 0.69
USP40-207ENST00000450940 ZNF765Q7L2R6 523 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 FGF11Q92914 225 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 OLFM3Q96PB7 478 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 CCDC3Q9BQI4 270 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 TMEM168Q9H0V1 697 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 ABCG8Q9H221 673 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 POLR1BQ9H9Y6 1135 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 CYP4F12Q9HCS2 524 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 GULP1Q9UBP9 304 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 HEY1Q9Y5J3 304 aa19.36■□□□□ 0.69
USP40-207ENST00000450940 A0A0U1RQS6 177 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 CAPN8A6NHC0 703 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 KCNK1O00180 336 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 APOL1O14791 398 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 USP12O75317 370 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 SOD1P00441 154 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 COMTP21964 271 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 ACTN2P35609 894 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 MAGEA1P43355 309 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 STC1P52823 247 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 PDK1Q15118 436 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 KIF26BQ2KJY2 2108 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 COL28A1Q2UY09 1125 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 TBC1D25Q3MII6 688 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 IGF2-ASQ6U949 168 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 ADAMTSL4Q6UY14 1074 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 RFLNAQ6ZTI6 216 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 TAF8Q7Z7C8 310 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 LSMEM2Q8N112 164 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 GPBAR1Q8TDU6 330 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 HNRNPLLQ8WVV9 542 aaKnown RBP19.35■□□□□ 0.69
USP40-207ENST00000450940 SCARF2Q96GP6 870 aaPredicted RBP19.35■□□□□ 0.69
USP40-207ENST00000450940 MAK16Q9BXY0 300 aaKnown RBP19.35■□□□□ 0.69
USP40-207ENST00000450940 BRD8Q9H0E9 1235 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 PCDH9Q9HC56 1237 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 TRNAU1APQ9NX07 287 aaKnown RBP19.35■□□□□ 0.69
USP40-207ENST00000450940 SIRPGQ9P1W8 387 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 SLC17A4Q9Y2C5 497 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 ENTPD2Q9Y5L3 495 aa19.35■□□□□ 0.69
USP40-207ENST00000450940 NOBOXO60393 691 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 KRT1P04264 644 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 EPHB1P54762 984 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 SKOR1P84550 965 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 ZBTB17Q13105 803 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 TCEA2Q15560 299 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 MFSD7Q6UXD7 560 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 CCDC170Q8IYT3 715 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 NRSN1Q8IZ57 195 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.34■□□□□ 0.69
USP40-207ENST00000450940 FAM46DQ8NEK8 389 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 CCL4L1Q8NHW4 92 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.34■□□□□ 0.69
USP40-207ENST00000450940 RNF25Q96BH1 459 aaPredicted RBP19.34■□□□□ 0.69
USP40-207ENST00000450940 ZNF578Q96N58 590 aaPredicted RBP19.34■□□□□ 0.69
USP40-207ENST00000450940 RABGEF1Q9UJ41 708 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 APPL1Q9UKG1 709 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 TTLL3Q9Y4R7 772 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 ALG6Q9Y672 507 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 UNC13CQ8NB66 2214 aa19.34■□□□□ 0.69
USP40-207ENST00000450940 A0A1W2PNU3 283 aaPredicted RBP19.33■□□□□ 0.68
USP40-207ENST00000450940 ANKRD66B4E2M5 251 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 CASC3O15234 703 aaKnown RBP19.33■□□□□ 0.68
USP40-207ENST00000450940 PSTPIP1O43586 416 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 MPOP05164 745 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 PYGLP06737 847 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 IVLP07476 585 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 PNLIPP16233 465 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 CD86P42081 329 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 CDKN2BP42772 138 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 PDX1P52945 283 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 RAET1GQ6H3X3 334 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 C17orf82Q86X59 251 aaPredicted RBP19.33■□□□□ 0.68
USP40-207ENST00000450940 NRROSQ86YC3 692 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 CCDC74AQ96AQ1 378 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 TADA1Q96BN2 335 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 AP2M1Q96CW1 435 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 ANP32EQ9BTT0 268 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 CARS2Q9HA77 564 aaKnown RBP19.33■□□□□ 0.68
USP40-207ENST00000450940 HYOU1Q9Y4L1 999 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 ZFC3H1O60293 1989 aaKnown RBP19.33■□□□□ 0.68
USP40-207ENST00000450940 IGSF10Q6WRI0 2623 aa19.33■□□□□ 0.68
USP40-207ENST00000450940 A0A0A6YYK5 440 aaPredicted RBP19.32■□□□□ 0.68
USP40-207ENST00000450940 PPP1R12AO14974 1030 aaPredicted RBP19.32■□□□□ 0.68
USP40-207ENST00000450940 SPOPO43791 374 aa19.32■□□□□ 0.68
USP40-207ENST00000450940 CLDN7O95471 211 aa19.32■□□□□ 0.68
USP40-207ENST00000450940 GLB1P16278 677 aa19.32■□□□□ 0.68
USP40-207ENST00000450940 GPR1P46091 355 aa19.32■□□□□ 0.68
USP40-207ENST00000450940 NR2C2P49116 596 aa19.32■□□□□ 0.68
USP40-207ENST00000450940 ERVPABLB-1P60509 514 aa19.32■□□□□ 0.68
USP40-207ENST00000450940 GABREP78334 506 aa19.32■□□□□ 0.68
USP40-207ENST00000450940 AP1B1Q10567 949 aa19.32■□□□□ 0.68
USP40-207ENST00000450940 HLTFQ14527 1009 aaKnown RBP eCLIP19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms