RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 CRTC1Q6UUV9 634 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 ZNF765Q7L2R6 523 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 TSPAN33Q86UF1 283 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 RHOT2Q8IXI1 618 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 WDR36Q8NI36 951 aaKnown RBP17.72■□□□□ 0.43
HDDC3-201ENST00000330334 ARRDC2Q8TBH0 407 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 RAPGEF5Q92565 580 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 SCARF2Q96GP6 870 aaPredicted RBP17.72■□□□□ 0.43
HDDC3-201ENST00000330334 LIN37Q96GY3 246 aaPredicted RBP17.72■□□□□ 0.43
HDDC3-201ENST00000330334 PRR11Q96HE9 360 aaPredicted RBP17.72■□□□□ 0.43
HDDC3-201ENST00000330334 CCDC42Q96M95 316 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 LYSMD1Q96S90 227 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 DPH1Q9BZG8 443 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 TSPY26PQ9H489 355 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 NHEJ1Q9H9Q4 299 aaPredicted RBP17.72■□□□□ 0.43
HDDC3-201ENST00000330334 DTLQ9NZJ0 730 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 RABGEF1Q9UJ41 708 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 SLC17A4Q9Y2C5 497 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 SMG1Q96Q15 3661 aaKnown RBP17.72■□□□□ 0.43
HDDC3-201ENST00000330334 LRP4O75096 1905 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 NUDT21O43809 227 aaKnown RBP17.71■□□□□ 0.43
HDDC3-201ENST00000330334 NOBOXO60393 691 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 MFAP3LO75121 409 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 PRLP01236 227 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 HOXB3P14651 431 aaPredicted RBP17.71■□□□□ 0.43
HDDC3-201ENST00000330334 RBMS1P29558 406 aaKnown RBP17.71■□□□□ 0.43
HDDC3-201ENST00000330334 GJC1P36383 396 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 PDX1P52945 283 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 SKOR1P84550 965 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 GBE1Q04446 702 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 EIF3IQ13347 325 aaKnown RBP17.71■□□□□ 0.43
HDDC3-201ENST00000330334 PEX6Q13608 980 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 HLTFQ14527 1009 aaKnown RBP eCLIP17.71■□□□□ 0.43
HDDC3-201ENST00000330334 MESDQ14696 234 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 C14orf28Q4W4Y0 310 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 DENND2CQ68D51 928 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 ADAMTSL4Q6UY14 1074 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 C17orf82Q86X59 251 aaPredicted RBP17.71■□□□□ 0.43
HDDC3-201ENST00000330334 SPACA3Q8IXA5 215 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 NRSN1Q8IZ57 195 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 ARL14Q8N4G2 192 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 KIAA1524Q8TCG1 905 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 GFM1Q96RP9 751 aaKnown RBP17.71■□□□□ 0.43
HDDC3-201ENST00000330334 CHP1Q99653 195 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 TDRD1Q9BXT4 1180 aaKnown RBP17.71■□□□□ 0.43
HDDC3-201ENST00000330334 LRRN3Q9H3W5 708 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 INTUQ9ULD6 942 aa17.71■□□□□ 0.43
HDDC3-201ENST00000330334 COL27A1Q8IZC6 1860 aaPredicted RBP17.71■□□□□ 0.43
HDDC3-201ENST00000330334 CCDC187A0A096LP49 1063 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 A0A1W2PQM1 296 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 C3orf70A6NLC5 250 aaPredicted RBP17.7■□□□□ 0.42
HDDC3-201ENST00000330334 CDRT15L2A8MXV6 281 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 FUCA1P04066 466 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 IVLP07476 585 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 CTPS1P17812 591 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 CCKBRP32239 447 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 SLC1A1P43005 524 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 STC1P52823 247 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 EPHB1P54762 984 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 CCL7P80098 99 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 DSC2Q02487 901 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 PPIDQ08752 370 aaKnown RBP17.7■□□□□ 0.42
HDDC3-201ENST00000330334 CCDC173Q0VFZ6 552 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 ILF3Q12906 894 aaKnown RBP eCLIP17.7■□□□□ 0.42
HDDC3-201ENST00000330334 PTPRRQ15256 657 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 TCEA2Q15560 299 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 C3orf38Q5JPI3 329 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 LRRC66Q68CR7 880 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 CNGA4Q8IV77 575 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 CCDC13Q8IYE1 715 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 CCDC97Q96F63 343 aaPredicted RBP17.7■□□□□ 0.42
HDDC3-201ENST00000330334 CRELD1Q96HD1 420 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 ZNF830Q96NB3 372 aaPredicted RBP17.7■□□□□ 0.42
HDDC3-201ENST00000330334 LGMNQ99538 433 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 GSDMCQ9BYG8 508 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 DPEP2Q9H4A9 486 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 CARS2Q9HA77 564 aaKnown RBP17.7■□□□□ 0.42
HDDC3-201ENST00000330334 SSUH2Q9Y2M2 353 aa17.7■□□□□ 0.42
HDDC3-201ENST00000330334 CAPN8A6NHC0 703 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 D6RAR5 112 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 MAP3K6O95382 1288 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 SOD1P00441 154 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 RPLP0P05388 317 aaKnown RBP17.69■□□□□ 0.42
HDDC3-201ENST00000330334 ZFXP17010 805 aaPredicted RBP17.69■□□□□ 0.42
HDDC3-201ENST00000330334 GPR1P46091 355 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 UCNP55089 124 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 IFI35P80217 286 aaPredicted RBP17.69■□□□□ 0.42
HDDC3-201ENST00000330334 NIPAL4Q0D2K0 466 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 ZFYVE27Q5T4F4 411 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 SLC9A4Q6AI14 798 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 RAET1GQ6H3X3 334 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 CLEC14AQ86T13 490 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 NRROSQ86YC3 692 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 CCNJLQ8IV13 435 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 PLD5Q8N7P1 536 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 CCNYQ8ND76 341 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 CCL4L1Q8NHW4 92 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 AP2M1Q96CW1 435 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 TMEM74Q96NL1 305 aa17.69■□□□□ 0.42
HDDC3-201ENST00000330334 UBL7Q96S82 380 aaPredicted RBP17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms