RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 VCYO14598 125 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 OGG1O15527 345 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 TLX3O43711 291 aaPredicted RBP7.51□□□□□ -1.21
NUP54-215ENST00000514313 AVILO75366 819 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 FTCDO95954 541 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 ABCB1P08183 1280 aaPredicted RBP7.51□□□□□ -1.21
NUP54-215ENST00000514313 ACTN1P12814 892 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 CHATP28329 748 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 SUOXP51687 545 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 INHBCP55103 352 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 GRAPQ13588 217 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 LAMB3Q13751 1172 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 C15orf59Q2T9L4 293 aaPredicted RBP7.51□□□□□ -1.21
NUP54-215ENST00000514313 C9orf152Q5JTZ5 239 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 EPHA10Q5JZY3 1008 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 PQLC2Q6ZP29 291 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 DPPA4Q7L190 304 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 TSPAN33Q86UF1 283 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 ZNF622Q969S3 477 aaKnown RBP eCLIP7.51□□□□□ -1.21
NUP54-215ENST00000514313 LRRC59Q96AG4 307 aaKnown RBP7.51□□□□□ -1.21
NUP54-215ENST00000514313 MSI2Q96DH6 328 aaKnown RBP7.51□□□□□ -1.21
NUP54-215ENST00000514313 VCPIP1Q96JH7 1222 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 ZNF570Q96NI8 536 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 MSTO1Q9BUK6 570 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 C1QTNF1Q9BXJ1 281 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 R3HDMLQ9H3Y0 253 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 OSGEPL1Q9H4B0 414 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 PLAGL1Q9UM63 463 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 PPIEQ9UNP9 301 aaKnown RBP7.51□□□□□ -1.21
NUP54-215ENST00000514313 CLIC4Q9Y696 253 aa7.51□□□□□ -1.21
NUP54-215ENST00000514313 COL11A2P13942 1736 aaPredicted RBP7.51□□□□□ -1.21
NUP54-215ENST00000514313 TTBK1Q5TCY1 1321 aaPredicted RBP7.51□□□□□ -1.21
NUP54-215ENST00000514313 LOC102723996A0A087X1L8 192 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 LRRC72A6NJI9 287 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 ATP2A1O14983 1001 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 JRKO75564 520 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 HOXD9P28356 352 aaPredicted RBP7.5□□□□□ -1.21
NUP54-215ENST00000514313 ECT2LQ008S8 904 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 MMEL1Q495T6 779 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 IGSF11Q5DX21 431 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 TCP11X2Q5H9J9 407 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 KRT79Q5XKE5 535 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 PLEKHA7Q6IQ23 1121 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 GALNT13Q8IUC8 556 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 MB21D2Q8IYB1 491 aaPredicted RBP7.5□□□□□ -1.21
NUP54-215ENST00000514313 HACE1Q8IYU2 909 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 SCYL3Q8IZE3 742 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 NSMCE1Q8WV22 266 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 VPS33AQ96AX1 596 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 OTULINQ96BN8 352 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 HARBI1Q96MB7 349 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 TTC14Q96N46 770 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 ACOX2Q99424 681 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 WDR77Q9BQA1 342 aaPredicted RBP7.5□□□□□ -1.21
NUP54-215ENST00000514313 ANKRD2Q9GZV1 360 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 ERVMER34-1Q9H9K5 563 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 WDR35Q9P2L0 1181 aa7.5□□□□□ -1.21
NUP54-215ENST00000514313 EXO1Q9UQ84 846 aaKnown RBP7.5□□□□□ -1.21
NUP54-215ENST00000514313 B8ZZF3 427 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 AKR1B15C9JRZ8 316 aaPredicted RBP7.49□□□□□ -1.21
NUP54-215ENST00000514313 PPP6CO00743 305 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 ADAM10O14672 748 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 MTA2O94776 668 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 GGPS1O95749 300 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 CYC1P08574 325 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 CHRNB2P17787 502 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 CPT2P23786 658 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 EEF1DP29692 281 aaKnown RBP7.49□□□□□ -1.21
NUP54-215ENST00000514313 ELLP55199 621 aaPredicted RBP7.49□□□□□ -1.21
NUP54-215ENST00000514313 MRPS34P82930 218 aaKnown RBP7.49□□□□□ -1.21
NUP54-215ENST00000514313 DPTQ07507 201 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 KCNC3Q14003 757 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 ZXDCQ2QGD7 858 aaPredicted RBP7.49□□□□□ -1.21
NUP54-215ENST00000514313 RARS2Q5T160 578 aaKnown RBP7.49□□□□□ -1.21
NUP54-215ENST00000514313 HECTD3Q5T447 861 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 ANKRD54Q6NXT1 300 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 MTSS1LQ765P7 747 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 PTF1AQ7RTS3 328 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 GALNTL5Q7Z4T8 443 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 SLFN11Q7Z7L1 901 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 CAMK1DQ8IU85 385 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 CNGA4Q8IV77 575 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 MMP21Q8N119 569 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 TEX45Q8NA69 505 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 SCCPDHQ8NBX0 429 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 Q8NFD4 153 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 OR6J1Q8NGC5 347 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 OR8K5Q8NH50 307 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 ARRDC2Q8TBH0 407 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 BICD2Q8TD16 824 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 CEP295NLQ96MC4 621 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 PCGF1Q9BSM1 259 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 POLDIP3Q9BY77 421 aaKnown RBP7.49□□□□□ -1.21
NUP54-215ENST00000514313 ESRP2Q9H6T0 727 aaKnown RBP7.49□□□□□ -1.21
NUP54-215ENST00000514313 MKKSQ9NPJ1 570 aaPredicted RBP7.49□□□□□ -1.21
NUP54-215ENST00000514313 GPR108Q9NPR9 543 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 PSD3Q9NYI0 1048 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 ZNHIT2Q9UHR6 403 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 ANAPC2Q9UJX6 822 aa7.49□□□□□ -1.21
NUP54-215ENST00000514313 STON1Q9Y6Q2 735 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 152.3 ms