RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 TKTL1P51854 596 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 PTENP60484 403 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 ST3GAL1Q11201 340 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 CPVLQ9H3G5 476 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 PCDHGB1Q9Y5G3 927 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 LTA4HP09960 611 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 ADRA2BP18089 450 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 XKR6Q5GH73 641 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 GJB4Q9NTQ9 266 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 EIF3KQ9UBQ5 218 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 SH3D21A4FU49 640 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 PGRP06401 933 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 TUBP50607 506 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 GRHL1Q9NZI5 618 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 ZNHIT2Q9UHR6 403 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 MAP3K6O95382 1288 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 MGAT1P26572 445 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 CHSY3Q70JA7 882 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 NOA1Q8NC60 698 aaKnown RBP13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 C11orf65Q8NCR3 313 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 S100PBPQ96BU1 408 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 C5orf34Q96MH7 638 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 KLK14Q9P0G3 267 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 MAGEL2Q9UJ55 1249 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 OR2L2Q8NH16 312 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 MRPL57Q9BQC6 102 aaKnown RBP13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 REREQ9P2R6 1566 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 SPTLC1O15269 473 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 DHDDSQ86SQ9 333 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 RNF148Q8N7C7 305 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 TARS2Q9BW92 718 aaKnown RBP13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 NKIRAS2Q9NYR9 191 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 ADAM28Q9UKQ2 775 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 STXBP5Q5T5C0 1151 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 PPP1R13LQ8WUF5 828 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 TCF12Q99081 682 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 C2orf49Q9BVC5 232 aaPredicted RBP13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 ELP3Q9H9T3 547 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 TMEM27Q9HBJ8 222 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 HCN3Q9P1Z3 774 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 PMF1-BGLAPU3KQ54 211 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 CNTNAP2Q9UHC6 1331 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 HSD17B2P37059 387 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 PKNOX1P55347 436 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 SLC9B1Q4ZJI4 515 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 MB21D2Q8IYB1 491 aaPredicted RBP13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 CEP76Q8TAP6 659 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 ABCD2Q9UBJ2 740 aa13.96□□□□□ -0.17
CCDC88A-201ENST00000263630 WASHC1A8K0Z3 465 aa13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 WASH3PC4AMC7 463 aa13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 TAPT1Q6NXT6 567 aa13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 WASH2PQ6VEQ5 465 aa13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 SEC14L3Q9UDX4 400 aa13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 FARSAQ9Y285 508 aaKnown RBP13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 PCDHB5Q9Y5E4 795 aa13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 PITPNM1O00562 1244 aa13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 IFNA2P01563 188 aa13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 SLC26A2P50443 739 aa13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 ZNF543Q08ER8 600 aa13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 ADAMTSL2Q86TH1 951 aa13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 ADAM32Q8TC27 787 aa13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 PIWIL2Q8TC59 973 aaKnown RBP13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 LGR4Q9BXB1 951 aa13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 TRNAU1APQ9NX07 287 aaKnown RBP13.96□□□□□ -0.18
CCDC88A-201ENST00000263630 VCPIP1Q96JH7 1222 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 FANCFQ9NPI8 374 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 PCDHA11Q9Y5I1 949 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 PRDX5P30044 214 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 HNF4AP41235 474 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 LIPEQ05469 1076 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 FAPQ12884 760 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 PM20D2Q8IYS1 436 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 ATP13A3Q9H7F0 1226 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 SEMA4BQ9NPR2 832 aaPredicted RBP13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 BARX2Q9UMQ3 279 aaPredicted RBP13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 PCDHGB2Q9Y5G2 931 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 VAPBO95292 243 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 CRELD2Q6UXH1 353 aaPredicted RBP13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 TC2NQ8N9U0 490 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 RXFP2Q8WXD0 754 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 PRPF19Q9UMS4 504 aaKnown RBP13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 PCDHGB7Q9Y5F8 929 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 A0A0G2JMP0 313 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 C1QTNF3-AMACRE9PGA6 284 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 PRKG2Q13237 762 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 PABPC1LQ4VXU2 614 aaKnown RBP13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 C1orf186Q6ZWK4 172 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 FAM131BQ86XD5 332 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 OR4M2Q8NGB6 313 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 RDH11Q8TC12 318 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 HEXDCQ8WVB3 486 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 BHMG1C9JSJ3 638 aaPredicted RBP13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 MLLT6P55198 1093 aaPredicted RBP13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 SLC44A5Q8NCS7 719 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 GRIN2DO15399 1336 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 MAPKBP1O60336 1514 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 BBIP1A8MTZ0 92 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 PET100P0DJ07 73 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 ELK3P41970 407 aa13.95□□□□□ -0.18
CCDC88A-201ENST00000263630 RPS9P46781 194 aaKnown RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms